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BioLiP
Download all results in tab-seperated text for 24809 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    15601 4qvy:H (2.51) BS01 BO2 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.09, IC50=8.037uM
    15602 4qvy:I (2.51) BS01 BO2 3.4.25.1 GO:0000502 ... P25451 25599643 PDBbind: -logKd/Ki=5.09, IC50=8.037uM
    15603 4qw0:H (2.9) BS01 BO2 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.14, IC50=7.192uM
    15604 4qw0:I (2.9) BS01 BO2 3.4.25.1 GO:0000502 ... P25451 25599643 PDBbind: -logKd/Ki=5.14, IC50=7.192uM
    15605 4qw1:H (2.9) BS01 BO2 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=6.11, IC50=0.773uM
    15606 4qw3:H (2.9) BS01 BO2 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=6.61, IC50=0.243uM
    15607 4qw4:H (2.8) BS01 3BV 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=6.95, IC50=0.113uM
    15608 4qw4:H (2.8) BS02 3BV 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=6.95, IC50=0.113uM
    15609 4qw4:Z (2.8) BS01 3BV 3.4.25.1 GO:0000502 ... P23724 25599643 PDBbind: -logKd/Ki=6.95, IC50=0.113uM
    15610 4qw5:H (3.0) BS01 3BV 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=6.35, IC50=0.449uM
    15611 4qw5:H (3.0) BS02 3BV 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=6.35, IC50=0.449uM
    15612 4qw5:Z (3.0) BS01 3BV 3.4.25.1 GO:0000502 ... P23724 25599643 PDBbind: -logKd/Ki=6.35, IC50=0.449uM
    15613 4qw6:H (2.9) BS01 3BV 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.85, IC50=1.397uM
    15614 4qw6:H (2.9) BS02 3BV 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.85, IC50=1.397uM
    15615 4qw6:Z (2.9) BS01 3BV 3.4.25.1 GO:0000502 ... P23724 25599643 PDBbind: -logKd/Ki=5.85, IC50=1.397uM
    15616 4qw7:H (2.7) BS01 3BV 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=6.28, IC50=0.521uM
    15617 4qw7:H (2.7) BS02 3BV 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=6.28, IC50=0.521uM
    15618 4qw7:I (2.7) BS01 3BV 3.4.25.1 GO:0000502 ... P25451 25599643 PDBbind: -logKd/Ki=6.28, IC50=0.521uM
    15619 4qw7:Z (2.7) BS01 3BV 3.4.25.1 GO:0000502 ... P23724 25599643 PDBbind: -logKd/Ki=6.28, IC50=0.521uM
    15620 4qwf:H (3.0) BS01 3BV 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=6.00, IC50=1uM
    15621 4qwf:H (3.0) BS02 3BV 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=6.00, IC50=1uM
    15622 4qwf:Z (3.0) BS01 3BV ? GO:0000502 ... P23724 25599643 PDBbind: -logKd/Ki=6.00, IC50=1uM
    15623 4qwg:H (2.6) BS01 3BV 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.97, IC50=1.069uM
    15624 4qwg:H (2.6) BS02 3BV 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.97, IC50=1.069uM
    15625 4qwg:I (2.6) BS01 3BV ? GO:0000502 ... P25451 25599643 PDBbind: -logKd/Ki=5.97, IC50=1.069uM
    15626 4qwg:Z (2.6) BS01 3BV ? GO:0000502 ... P23724 25599643 PDBbind: -logKd/Ki=5.97, IC50=1.069uM
    15627 4qwi:H (2.6) BS01 3BV 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.36, IC50=4.401uM
    15628 4qwi:H (2.6) BS02 3BV 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.36, IC50=4.401uM
    15629 4qwi:I (2.6) BS01 3BV ? GO:0000502 ... P25451 25599643 PDBbind: -logKd/Ki=5.36, IC50=4.401uM
    15630 4qwi:Z (2.6) BS01 3BV ? GO:0000502 ... P23724 25599643 PDBbind: -logKd/Ki=5.36, IC50=4.401uM
    15631 4qwj:H (2.9) BS01 3BV 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.77, IC50=1.686uM
    15632 4qwj:H (2.9) BS02 3BV 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.77, IC50=1.686uM
    15633 4qwj:I (2.9) BS01 3BV ? GO:0000502 ... P25451 25599643 PDBbind: -logKd/Ki=5.77, IC50=1.686uM
    15634 4qwj:Z (2.9) BS01 3BV ? GO:0000502 ... P23724 25599643 PDBbind: -logKd/Ki=5.77, IC50=1.686uM
    15635 4qwk:H (2.8) BS01 3BV 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=6.27, IC50=0.543uM
    15636 4qwk:H (2.8) BS02 3BV 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=6.27, IC50=0.543uM
    15637 4qwk:Z (2.8) BS01 3BV ? GO:0000502 ... P23724 25599643 PDBbind: -logKd/Ki=6.27, IC50=0.543uM
    15638 4qwl:H (2.6) BS01 3BV 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=6.18, IC50=0.661uM
    15639 4qwl:H (2.6) BS02 3BV 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=6.18, IC50=0.661uM
    15640 4qwl:I (2.6) BS01 3BV ? GO:0000502 ... P25451 25599643 PDBbind: -logKd/Ki=6.18, IC50=0.661uM
    15641 4qwl:Z (2.6) BS01 3BV ? GO:0000502 ... P23724 25599643 PDBbind: -logKd/Ki=6.18, IC50=0.661uM
    15642 4qwr:H (2.9) BS01 3BV 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.93, IC50=1.184uM
    15643 4qwr:H (2.9) BS02 3BV 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.93, IC50=1.184uM
    15644 4qwr:I (2.9) BS01 3BV 3.4.25.1 GO:0000502 ... P25451 25599643 PDBbind: -logKd/Ki=5.93, IC50=1.184uM
    15645 4qwr:Z (2.9) BS01 3BV 3.4.25.1 GO:0000502 ... P23724 25599643 PDBbind: -logKd/Ki=5.93, IC50=1.184uM
    15646 4qws:H (3.0) BS01 3BV 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=6.50, IC50=0.316uM
    15647 4qws:H (3.0) BS02 3BV 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=6.50, IC50=0.316uM
    15648 4qws:Z (3.0) BS01 3BV 3.4.25.1 GO:0000502 ... P23724 25599643 PDBbind: -logKd/Ki=6.50, IC50=0.316uM
    15649 4qwu:H (3.0) BS01 BO2 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.51, IC50=3.120uM
    15650 4qwx:H (2.9) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=6.27, IC50=0.540uM
    15651 4qxj:H (2.8) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.90, IC50=1.265uM
    15652 4qxo:A (1.88) BS01 1YE ? GO:0002218 ... Q86WV6 25199835 MOAD: Kd=3.12uM
    PDBbind: -logKd/Ki=5.51, Kd=3.12uM
    15653 4qxq:A (2.42) BS01 1YE ? GO:0002218 ... Q86WV6 25199835 MOAD: Kd=1.99uM
    PDBbind: -logKd/Ki=5.70, Kd=1.99uM
    15654 4qxq:A (2.42) BS02 1YE ? GO:0002218 ... Q86WV6 25199835 MOAD: Kd=1.99uM
    PDBbind: -logKd/Ki=5.70, Kd=1.99uM
    15655 4qxq:B (2.42) BS01 1YE ? GO:0002218 ... Q86WV6 25199835 MOAD: Kd=1.99uM
    PDBbind: -logKd/Ki=5.70, Kd=1.99uM
    15656 4qxq:B (2.42) BS02 1YE ? GO:0002218 ... Q86WV6 25199835 MOAD: Kd=1.99uM
    PDBbind: -logKd/Ki=5.70, Kd=1.99uM
    15657 4qxr:A (2.37) BS01 1YE ? GO:0002218 ... Q86WV6 25199835 MOAD: Kd=0.99uM
    PDBbind: -logKd/Ki=6.00, Kd=0.99uM
    15658 4qxr:A (2.37) BS02 1YE ? GO:0002218 ... Q86WV6 25199835 MOAD: Kd=0.99uM
    PDBbind: -logKd/Ki=6.00, Kd=0.99uM
    15659 4qxr:B (2.37) BS01 1YE ? GO:0002218 ... Q86WV6 25199835 MOAD: Kd=0.99uM
    PDBbind: -logKd/Ki=6.00, Kd=0.99uM
    15660 4qxr:B (2.37) BS02 1YE ? GO:0002218 ... Q86WV6 25199835 MOAD: Kd=0.99uM
    PDBbind: -logKd/Ki=6.00, Kd=0.99uM
    15661 4qxs:F (1.9) BS02 WC1 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 25630225 MOAD: ic50=1.1uM
    PDBbind: -logKd/Ki=5.96, IC50=1.1uM
    BindingDB: IC50=1100nM
    15662 4qy3:A (1.5) BS02 3G1 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 25407638 MOAD: Ki=0.15uM
    PDBbind: -logKd/Ki=6.82, Ki=0.15uM
    15663 4qye:A (2.05) BS01 3DL 2.7.11.1 GO:0000077 ... O14757 25453805 MOAD: ic50=1.2uM
    PDBbind: -logKd/Ki=5.92, IC50=1.2uM
    BindingDB: IC50=1200nM
    15664 4qyg:A (1.75) BS01 3DW 2.7.11.1 GO:0000077 ... O14757 25453805 MOAD: ic50=0.0041uM
    PDBbind: -logKd/Ki=8.39, IC50=4.1nM
    BindingDB: IC50=>10000nM
    15665 4qyh:A (1.9) BS01 3DX 2.7.11.1 GO:0000077 ... O14757 25453805 MOAD: ic50=0.0013uM
    PDBbind: -logKd/Ki=8.89, IC50=1.3nM
    BindingDB: IC50=1.3nM, EC50=98nM
    15666 4qyy:A (1.65) BS01 3G7 2.7.11.24 GO:0000165 ... P63086 25313996 MOAD: Kd=0.05uM
    PDBbind: -logKd/Ki=7.30, Kd=0.05uM
    15667 4qz0:H (3.0) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.46, IC50=3.502uM
    15668 4qz1:H (3.0) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.44, IC50=3.658uM
    15669 4qz2:H (2.7) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.21, IC50=6.167uM
    15670 4qz3:H (2.8) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.51, IC50=3.085uM
    15671 4qz4:H (3.0) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.01, IC50=9.830uM
    15672 4qz5:H (2.8) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.26, IC50=5.452uM
    15673 4qz6:H (2.9) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.53, IC50=2.979uM
    15674 4qz7:H (2.8) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.65, IC50=2.262uM
    15675 4qzs:A (1.45) BS01 JQ1 ? N/A O60885 25290579 MOAD: Kd=89nM
    PDBbind: -logKd/Ki=7.05, Kd=89nM
    15676 4qzw:H (3.0) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.15, IC50=7.155uM
    15677 4qzx:H (2.6) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=6.26, IC50=0.553uM
    15678 4r02:K (2.5) BS01 3E5 3.4.25.1 GO:0004298 ... P30656 25087721 PDBbind: -logKd/Ki=7.41, IC50=39nM
    15679 4r02:L (2.5) BS01 3E5 3.4.25.1 GO:0000502 ... P23724 25087721 PDBbind: -logKd/Ki=7.41, IC50=39nM
    15680 4r06:A (2.22) BS01 3E7 ? GO:0003677 ... P37231 26579553 MOAD: Kd=565nM
    PDBbind: -logKd/Ki=6.29, Kd=513nM
    BindingDB: IC50=7nM
    15681 4r07:A (2.0) BS03 UCG ? GO:0002224 ... Q9NR97 25599397 MOAD: Kd=4.8uM
    PDBbind: -logKd/Ki=5.32, Kd=4.8uM
    15682 4r0a:A (1.9) BS01 URI ? GO:0002224 ... Q9NR97 25599397 MOAD: Kd=55uM
    PDBbind: -logKd/Ki=4.26, Kd=55uM
    15683 4r0i:A (1.9) BS02 3KM 3.4.21.109 GO:0004252 ... Q9Y5Y6 25556099 MOAD: Ki=0.3uM
    PDBbind: -logKd/Ki=6.52, Ki=0.3uM
    15684 4r17:K (2.1) BS01 3K4 3.4.25.1 GO:0004298 ... P30656 25244435 PDBbind: -logKd/Ki=7.68, IC50=21nM
    15685 4r18:K (2.4) BS01 ABA 3.4.25.1 GO:0004298 ... P30656 25244435 PDBbind: -logKd/Ki=7.68, IC50=21nM
    15686 4r1v:A (1.2) BS01 3E8 2.7.10.1 GO:0004672 ... P08581 25736998 MOAD: ic50<1nM
    PDBbind: -logKd/Ki=9.00, IC50<1nM
    BindingDB: IC50=<100nM
    15687 4r1y:A (2.0) BS01 3EH 2.7.10.1 GO:0004672 ... P08581 25736998 MOAD: ic50=400nM
    PDBbind: -logKd/Ki=6.40, IC50=400nM
    BindingDB: IC50=400nM
    15688 4r22:B (2.6) BS01 dna ? GO:0003677 ... G2RUZ1 25691471 PDBbind: Kd=11.6nM
    15689 4r3b:A (1.366) BS02 3GE 3.5.2.6 GO:0008800 ... P0AD64 25536850 PDBbind: -logKd/Ki=6.25, Ki=0.56uM
    15690 4r3c:A (2.06) BS02 3GF 2.7.11.24 GO:0000077 ... Q16539 25676389 PDBbind: -logKd/Ki=7.00, Ki=101nM
    BindingDB: Ki=100nM, IC50=230nM
    15691 4r3c:A (2.06) BS03 3GF 2.7.11.24 GO:0000077 ... Q16539 25676389 PDBbind: -logKd/Ki=7.00, Ki=101nM
    BindingDB: Ki=100nM, IC50=230nM
    15692 4r3i:A (1.8) BS01 rna ? GO:0003723 ... Q96MU7 25242552 PDBbind: Kd=2uM
    15693 4r3w:A (1.91) BS02 A2P N/A GO:0004073 ... N/A 25478842 MOAD: Ki=1mM
    PDBbind: -logKd/Ki=3.00, Ki=1.0mM
    15694 4r4c:A (1.4) BS01 3HS ? GO:0003677 ... P27694 25699140 PDBbind: -logKd/Ki=5.54, Kd=2.9uM
    BindingDB: Kd=2900nM
    15695 4r4e:B (2.57) BS01 dna ? GO:0003677 ... P37582 25691471 PDBbind: Kd=8.1nM
    15696 4r4e:B (2.57) BS02 dna ? GO:0003677 ... P37582 25691471 PDBbind: Kd=8.1nM
    15697 4r4i:A (1.4) BS01 3HV ? GO:0003677 ... P27694 25699140 PDBbind: -logKd/Ki=6.27, Kd=0.54uM
    BindingDB: Kd=0.540000nM
    15698 4r4o:A (1.33) BS01 3HW ? GO:0003677 ... P27694 25699140 PDBbind: -logKd/Ki=5.82, Kd=1.5uM
    BindingDB: Kd=1.5nM
    15699 4r4q:A (1.35) BS01 3HZ ? GO:0003677 ... P27694 25699140 PDBbind: -logKd/Ki=5.09, Kd=8.2uM
    15700 4r4t:A (1.28) BS01 3J0 ? GO:0003677 ... P27694 25699140 PDBbind: -logKd/Ki=6.26, Kd=0.55uM
    BindingDB: Kd=0.550000nM
    15701 4r55:A (1.8) BS01 dna ? GO:0003677 ... Q97ZE3 25555709 PDBbind: Kd=1.67uM
    15702 4r55:A (1.8) BS02 dna ? GO:0003677 ... Q97ZE3 25555709 PDBbind: Kd=1.67uM
    15703 4r56:A (2.3) BS01 dna ? GO:0003677 ... Q97ZE3 25555709 PDBbind: Kd=0.134uM
    15704 4r56:A (2.3) BS02 dna ? GO:0003677 ... Q97ZE3 25555709 PDBbind: Kd=0.134uM
    15705 4r56:A (2.3) BS03 dna ? GO:0003677 ... Q97ZE3 25555709 PDBbind: Kd=0.134uM
    15706 4r56:B (2.3) BS01 dna ? GO:0003677 ... Q97ZE3 25555709 PDBbind: Kd=0.134uM
    15707 4r56:B (2.3) BS02 dna ? GO:0003677 ... Q97ZE3 25555709 PDBbind: Kd=0.134uM
    15708 4r59:A (1.65) BS02 3J3 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 25254302 MOAD: Ki=11nM
    PDBbind: -logKd/Ki=7.96, Ki=11nM
    15709 4r5a:A (1.64) BS02 3J4 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 25254302 MOAD: Ki=2nM
    PDBbind: -logKd/Ki=8.70, Ki=2nM
    15710 4r5b:A (1.5) BS02 3J4 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 25254302 MOAD: Ki=185nM
    PDBbind: -logKd/Ki=6.73, Ki=185nM
    15711 4r5g:B (3.4501) BS01 3JE ? GO:0005524 ... P0A6Y8 25148104 PDBbind: -logKd/Ki=5.22, Kd=6.0uM
    15712 4r5n:A (1.8) BS01 3J9 3.4.23.46 GO:0004190 ... P56817 25411915 MOAD: ic50=76nM
    PDBbind: -logKd/Ki=7.12, IC50=76nM
    BindingDB: IC50=60nM
    15713 4r5t:A (1.98) BS02 R5T 3.4.11.- GO:0006508 ... O96935 25299353 MOAD: Ki=0.8uM
    PDBbind: -logKd/Ki=6.10, Ki=0.8uM
    BindingDB: Ki=0.800000nM
    15714 4r5v:A (2.1) BS02 R5V 3.4.11.- GO:0006508 ... O96935 25299353 MOAD: Ki=0.7uM
    PDBbind: -logKd/Ki=6.15, Ki=0.7uM
    BindingDB: Ki=0.700000nM
    15715 4r5w:A (2.84) BS01 XAV 2.4.2.-
    2.4.2.30
    GO:0003950 ... P09874 28001384 PDBbind: -logKd/Ki=7.13, IC50=74.1nM
    BindingDB: IC50=120nM, Kd=620nM
    15716 4r5x:A (1.85) BS02 R5X 3.4.11.- GO:0006508 ... O96935 25299353 MOAD: Ki=5.5uM
    PDBbind: -logKd/Ki=5.26, Ki=5.5uM
    BindingDB: Ki=5.5nM
    15717 4r5y:A (3.5) BS01 3K3 2.7.11.1 GO:0004672 ... P15056 26208524 PDBbind: -logKd/Ki=7.64, IC50=23nM
    BindingDB: IC50=23nM
    15718 4r6e:A (2.2) BS01 3JD 2.4.2.-
    2.4.2.30
    GO:0003950 ... P09874 28001384 MOAD: ic50=132nM
    PDBbind: -logKd/Ki=7.78, IC50=16.7nM
    BindingDB: IC50=132nM, Ki=3.2nM, EC50=31000nM
    15719 4r6t:A (2.6) BS04 R5T 3.4.11.1
    3.4.13.-
    GO:0005737 ... Q8IL11 25299353 PDBbind: -logKd/Ki=7.52, Ki=0.03uM
    BindingDB: Ki=0.030000nM
    15720 4r6v:A (2.353) BS01 FI3 2.7.10.1 GO:0004672 ... P22455 25349422 PDBbind: -logKd/Ki=7.45, IC50=35.3nM
    15721 4r6w:A (1.5894) BS02 SAH 2.1.1.103 GO:0000139 ... Q8IDQ9 25288796 MOAD: Kd=5.4uM
    PDBbind: -logKd/Ki=5.27, Kd=5.4uM
    15722 4r6x:A (2.5534) BS02 SAH 2.1.1.103 GO:0000139 ... Q8IDQ9 25288796 PDBbind: -logKd/Ki=5.27, Kd=5.4uM
    15723 4r73:A (1.6) BS01 G6P ? GO:0015888 ... A3N294 26295949 MOAD: Kd=23nM
    PDBbind: -logKd/Ki=7.64, Kd=23nM
    15724 4r74:A (1.93) BS01 F6P ? GO:0015888 ... A3N294 26295949 MOAD: Kd=8nM
    PDBbind: -logKd/Ki=8.10, Kd=8nM
    15725 4r75:A (1.278) BS01 S7P ? GO:0015888 ... A3N294 26295949 MOAD: Kd=57nM
    PDBbind: -logKd/Ki=7.24, Kd=57nM
    15726 4r76:A (2.5) BS04 R5X 3.4.11.1
    3.4.13.-
    GO:0005737 ... Q8IL11 25299353 MOAD: Ki=0.014uM
    PDBbind: -logKd/Ki=7.85, Ki=14nM
    BindingDB: Ki=0.014000nM
    15727 4r76:F (2.5) BS04 R5X 3.4.11.1
    3.4.13.-
    GO:0005737 ... Q8IL11 25299353 MOAD: Ki=0.014uM
    PDBbind: -logKd/Ki=7.85, Ki=14nM
    BindingDB: Ki=0.014000nM
    15728 4r7m:A (2.85) BS04 3MW 3.4.11.1
    3.4.13.-
    GO:0005737 ... Q8IL11 25299353 PDBbind: -logKd/Ki=7.96, Kd=11nM
    BindingDB: Ki=0.011000nM
    15729 4r8y:A (1.9) BS01 3KO 3.4.23.46 GO:0004190 ... P56817 25455483 MOAD: Ki=0.64uM
    PDBbind: -logKd/Ki=6.19, Ki=0.64uM
    BindingDB: Ki=640nM
    15730 4r91:A (1.58) BS01 3KT 3.4.23.46 GO:0004190 ... P56817 25455483 MOAD: Ki=430nM
    PDBbind: -logKd/Ki=6.37, Kd=430nM
    BindingDB: Ki=430nM
    15731 4r92:A (1.71) BS01 3KU 3.4.23.46 GO:0004190 ... P56817 25455483 MOAD: Ki=39nM
    PDBbind: -logKd/Ki=7.41, Ki=39nM
    BindingDB: Ki=39nM
    15732 4r93:A (1.71) BS01 779 3.4.23.46 GO:0004190 ... P56817 25455483 MOAD: Ki=16nM
    PDBbind: -logKd/Ki=7.80, Ki=16nM
    BindingDB: Ki=16nM
    15733 4r95:A (1.99) BS01 3KW 3.4.23.46 GO:0004190 ... P56817 25455483 MOAD: Ki=22nM
    PDBbind: -logKd/Ki=7.85, Ki=14nM
    15734 4ra1:A (1.75) BS01 ALX ? GO:0015833 ... Q52012 26244338 MOAD: Kd=0.43uM
    PDBbind: -logKd/Ki=5.94, Kd=1.16uM
    15735 4ra5:A (2.61) BS01 3L0 2.7.11.13 GO:0004672 ... Q04759 25254961 PDBbind: -logKd/Ki=8.40, IC50=4nM
    BindingDB: IC50=4.0nM
    15736 4rab:A (2.264) BS01 3L3 2.4.2.8 GO:0000166 ... P00492 25494538 MOAD: Ki=0.04uM
    PDBbind: -logKd/Ki=7.40, Ki=0.04uM
    15737 4rab:C (2.264) BS01 3L3 2.4.2.8 GO:0000166 ... P00492 25494538 MOAD: Ki=0.04uM
    PDBbind: -logKd/Ki=7.40, Ki=0.04uM
    15738 4rac:A (2.05) BS01 3L4 2.4.2.8 GO:0000166 ... P00492 25494538 MOAD: Ki=0.03uM
    PDBbind: -logKd/Ki=7.52, Ki=0.03uM
    15739 4rac:C (2.05) BS01 3L4 2.4.2.8 GO:0000166 ... P00492 25494538 MOAD: Ki=0.03uM
    PDBbind: -logKd/Ki=7.52, Ki=0.03uM
    15740 4rad:A (2.0) BS01 3L5 2.4.2.8 GO:0000166 ... P00492 25494538 PDBbind: -logKd/Ki=7.10, Ki=0.08uM
    15741 4rad:C (2.0) BS01 3L5 2.4.2.8 GO:0000166 ... P00492 25494538 PDBbind: -logKd/Ki=7.10, Ki=0.08uM
    15742 4rak:A (2.04) BS01 652 ? GO:0003677 ... P55055 25435151 MOAD: Ki=14nM
    PDBbind: -logKd/Ki=7.85, Ki=14nM
    BindingDB: EC50=250nM, Ki=14nM
    15743 4ran:A (2.549) BS01 3L6 2.4.2.8 GO:0000166 ... P00492 25494538 PDBbind: -logKd/Ki=7.15, Ki=0.07uM
    15744 4rao:A (1.871) BS01 3L7 2.4.2.8 GO:0000166 ... P00492 25494538 MOAD: Ki=1uM
    PDBbind: -logKd/Ki=6.00, Ki=1uM
    15745 4rao:C (1.871) BS01 3L7 2.4.2.8 GO:0000166 ... P00492 25494538 MOAD: Ki=1uM
    PDBbind: -logKd/Ki=6.00, Ki=1uM
    15746 4raq:A (2.53) BS01 3L8 2.4.2.8 GO:0000166 ... P00492 25494538 PDBbind: -logKd/Ki=6.72, Ki=0.19uM
    15747 4raq:C (2.53) BS01 3L8 2.4.2.8 GO:0000166 ... P00492 25494538 PDBbind: -logKd/Ki=6.72, Ki=0.19uM
    15748 4rbo:A (3.3) BS01 dna ? GO:0000981 ... Q9H9S0 25825768 PDBbind: Kd=5.9uM
    15749 4rbo:A (3.3) BS02 dna ? GO:0000981 ... Q9H9S0 25825768 PDBbind: Kd=5.9uM
    15750 4rbo:D (3.3) BS01 dna ? GO:0000981 ... Q9H9S0 25825768 PDBbind: Kd=5.9uM
    15751 4rbo:D (3.3) BS02 dna ? GO:0000981 ... Q9H9S0 25825768 PDBbind: Kd=5.9uM
    15752 4rcd:A (1.9) BS01 3LL 3.4.23.46 GO:0004190 ... P56817 25363711 MOAD: ic50=0.7nM
    PDBbind: -logKd/Ki=9.15, IC50=0.7nM
    BindingDB: IC50=0.700000nM
    15753 4rce:A (2.4) BS01 3LN 3.4.23.46 GO:0004190 ... P56817 25389560 MOAD: ic50=2nM
    PDBbind: -logKd/Ki=8.70, IC50=2nM
    BindingDB: IC50=25nM
    15754 4rcf:A (1.78) BS01 3LO 3.4.23.46 GO:0004190 ... P56817 25389560 MOAD: ic50=4nM
    PDBbind: -logKd/Ki=8.40, IC50=4nM
    BindingDB: IC50=4.1nM
    15755 4rcg:A (2.6) BS01 GDP 4.1.1.32 GO:0004611 ... P9WIH3 25798914 PDBbind: -logKd/Ki=5.03, Kd=9.3uM
    15756 4rcj:A (1.6) BS01 rna ? GO:0003723 ... Q9BYJ9 26318451 PDBbind: Kd=22uM
    15757 4rcm:A (1.8) BS01 rna ? GO:0003723 ... Q06390 26318451 PDBbind: Kd=22uM
    15758 4rcm:B (1.8) BS01 rna ? GO:0003723 ... Q06390 26318451 PDBbind: Kd=22uM
    15759 4rd0:A (1.713) BS01 GDP 3.6.5.3 GO:0000049 ... Q980A5 25690901 MOAD: Kd=0.24uM
    PDBbind: -logKd/Ki=6.62, Kd=0.24uM
    15760 4rd0:A (1.713) BS03 GDP 3.6.5.3 GO:0000049 ... Q980A5 25690901 MOAD: Kd=0.24uM
    PDBbind: -logKd/Ki=6.62, Kd=0.24uM
    15761 4rd3:A (1.69) BS01 GDP 3.6.5.3 GO:0000049 ... Q980A5 25690901 PDBbind: -logKd/Ki=6.47, Kd=0.34uM
    15762 4rd3:A (1.69) BS03 GDP 3.6.5.3 GO:0000049 ... Q980A5 25690901 PDBbind: -logKd/Ki=6.47, Kd=0.34uM
    15763 4rd6:A (1.944) BS01 GDP 3.6.5.3 GO:0000049 ... Q980A5 25690901 MOAD: Kd=0.52uM
    PDBbind: -logKd/Ki=6.28, Kd=0.52uM
    15764 4rdn:A (2.1) BS01 6MD ? GO:0003723 ... Q9Y5A9 25412658 PDBbind: -logKd/Ki=5.92, Kd=1.2uM
    15765 4re2:A (2.0) BS01 MVL 3.2.1.25 GO:0004553 ... A2YPH1 N/A PDBbind: -logKd/Ki=4.98, Ki=10.4uM
    15766 4re3:A (2.55) BS01 GIM 3.2.1.25 GO:0004553 ... A2YPH1 N/A PDBbind: -logKd/Ki=8.57, Ki=2.7nM
    15767 4re4:A (2.29) BS01 IFM 3.2.1.25 GO:0004553 ... A2YPH1 N/A PDBbind: -logKd/Ki=6.87, Ki=135nM
    15768 4re9:A (2.908) BS02 3M9 3.4.24.56 GO:0001618 ... P14735 26394692 PDBbind: -logKd/Ki=4.92, IC50=12.1uM
    15769 4res:A (3.408) BS04 BUF 7.2.2.13 GO:0000166 ... P05024 25624492 PDBbind: -logKd/Ki=7.85, Kd=14nM
    15770 4ret:A (4.0) BS07 DGX 7.2.2.13 GO:0000166 ... P05024 25624492 PDBbind: -logKd/Ki=7.59, Kd=26nM
    15771 4rfc:A (1.645) BS02 3O1 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 25358036 MOAD: Ki=5.7nM
    PDBbind: -logKd/Ki=8.24, Ki=5.7nM
    BindingDB: Ki=5.7nM
    15772 4rfd:A (1.631) BS02 3O5 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 25358036 MOAD: Ki=8.9nM
    PDBbind: -logKd/Ki=8.05, Ki=8.9nM
    15773 4rfd:A (1.631) BS03 3O5 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 25358036 MOAD: Ki=8.9nM
    PDBbind: -logKd/Ki=8.05, Ki=8.9nM
    15774 4rfm:A (2.1) BS01 3P6 2.7.10.2 GO:0004672 ... Q08881 25844760 MOAD: Ki=0.00009uM
    PDBbind: -logKd/Ki=10.05, Ki=90pM
    BindingDB: IC50=4.0nM, Ki=0.090000nM
    15775 4rfr:B (1.5) BS01 RHN 1.14.11.33 GO:0005515 ... P05050 27015802 MOAD: Kd=0.29uM
    PDBbind: -logKd/Ki=6.54, Kd=0.29uM
    15776 4rfy:A (1.7) BS01 3OU 2.7.10.2 GO:0004672 ... Q06187 25466710 MOAD: ic50=100nM
    PDBbind: -logKd/Ki=7.00, IC50=100nM
    15777 4rfz:A (1.17) BS01 3OV 2.7.10.2 GO:0004672 ... Q06187 25466710 MOAD: ic50=40nM
    PDBbind: -logKd/Ki=7.40, IC50=40nM
    BindingDB: IC50=40nM
    15778 4rg0:A (2.5) BS01 3P0 2.7.10.2 GO:0004672 ... Q06187 25466710 MOAD: ic50=50nM
    PDBbind: -logKd/Ki=7.30, IC50=50nM
    BindingDB: IC50=50nM
    15779 4rhu:A (2.573) BS01 3QE 2.4.2.8 GO:0000166 ... P9WHQ9 25915781 PDBbind: -logKd/Ki=6.16, Ki=0.69uM
    15780 4rhu:B (2.573) BS01 3QE 2.4.2.8 GO:0000166 ... P9WHQ9 25915781 PDBbind: -logKd/Ki=6.16, Ki=0.69uM
    15781 4rhx:A (2.0322) BS01 3QF 2.4.2.8 GO:0000166 ... P9WHQ9 25915781 MOAD: Ki=1.6uM
    PDBbind: -logKd/Ki=5.80, Ki=1.6uM
    15782 4rhx:B (2.0322) BS01 3QF 2.4.2.8 GO:0000166 ... P9WHQ9 25915781 MOAD: Ki=1.6uM
    PDBbind: -logKd/Ki=5.80, Ki=1.6uM
    15783 4rhx:D (2.0322) BS01 3QF 2.4.2.8 GO:0000166 ... P9WHQ9 25915781 MOAD: Ki=1.6uM
    PDBbind: -logKd/Ki=5.80, Ki=1.6uM
    15784 4rhy:A (2.3196) BS02 3QG 2.4.2.8 GO:0000166 ... P9WHQ9 25915781 MOAD: Ki=1.13uM
    PDBbind: -logKd/Ki=5.95, Ki=1.13uM
    15785 4rhy:B (2.3196) BS02 3QG 2.4.2.8 GO:0000166 ... P9WHQ9 25915781 MOAD: Ki=1.13uM
    PDBbind: -logKd/Ki=5.95, Ki=1.13uM
    15786 4ri9:A (2.9) BS01 dna 3.1.21.-
    3.1.4.1
    GO:0003676 ... Q9Y2M0 25430771 PDBbind: Kd=0.4nM
    15787 4ri9:A (2.9) BS02 dna 3.1.21.-
    3.1.4.1
    GO:0003676 ... Q9Y2M0 25430771 PDBbind: Kd=0.4nM
    15788 4ri9:A (2.9) BS03 dna 3.1.21.-
    3.1.4.1
    GO:0003676 ... Q9Y2M0 25430771 PDBbind: Kd=0.4nM
    15789 4ri9:A (2.9) BS04 dna 3.1.21.-
    3.1.4.1
    GO:0003676 ... Q9Y2M0 25430771 PDBbind: Kd=0.4nM
    15790 4ri9:B (2.9) BS01 dna 3.1.21.-
    3.1.4.1
    GO:0003676 ... Q9Y2M0 25430771 PDBbind: Kd=0.4nM
    15791 4ri9:B (2.9) BS02 dna 3.1.21.-
    3.1.4.1
    GO:0003676 ... Q9Y2M0 25430771 PDBbind: Kd=0.4nM
    15792 4ri9:B (2.9) BS03 dna 3.1.21.-
    3.1.4.1
    GO:0003676 ... Q9Y2M0 25430771 PDBbind: Kd=0.4nM
    15793 4ri9:B (2.9) BS04 dna 3.1.21.-
    3.1.4.1
    GO:0003676 ... Q9Y2M0 25430771 PDBbind: Kd=0.4nM
    15794 4rib:A (3.25) BS01 dna 3.1.21.-
    3.1.4.1
    GO:0003676 ... Q9Y2M0 25430771 PDBbind: Kd=10.3nM
    15795 4rib:A (3.25) BS02 dna 3.1.21.-
    3.1.4.1
    GO:0003676 ... Q9Y2M0 25430771 PDBbind: Kd=10.3nM
    15796 4rib:A (3.25) BS03 dna 3.1.21.-
    3.1.4.1
    GO:0003676 ... Q9Y2M0 25430771 PDBbind: Kd=10.3nM
    15797 4rib:A (3.25) BS04 dna 3.1.21.-
    3.1.4.1
    GO:0003676 ... Q9Y2M0 25430771 PDBbind: Kd=10.3nM
    15798 4rib:B (3.25) BS01 dna 3.1.21.-
    3.1.4.1
    GO:0003676 ... Q9Y2M0 25430771 PDBbind: Kd=10.3nM
    15799 4rib:B (3.25) BS02 dna 3.1.21.-
    3.1.4.1
    GO:0003676 ... Q9Y2M0 25430771 PDBbind: Kd=10.3nM
    15800 4rio:A (2.69) BS01 3QX 2.7.10.2 GO:0004672 ... P52333 25453808 PDBbind: -logKd/Ki=9.00, IC50=1nM
    BindingDB: IC50=1.000000nM

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218