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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 24809 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    11001 3ufd:B (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 22941636 PDBbind: Kd=0.61nM
    11002 3ufd:E (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 22941636 PDBbind: Kd=0.61nM
    11003 3ufd:E (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 22941636 PDBbind: Kd=0.61nM
    11004 3ufd:F (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 22941636 PDBbind: Kd=0.61nM
    11005 3ufd:F (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 22941636 PDBbind: Kd=0.61nM
    11006 3ufl:A (1.9) BS01 508 3.4.23.46 GO:0004190 ... P56817 22130130 MOAD: ic50=0.15uM
    PDBbind: -logKd/Ki=6.82, IC50=0.15uM
    BindingDB: IC50=150nM
    11007 3ug2:A (2.5) BS01 IRE 2.7.10.1 GO:0004672 ... P00533 22349823 MOAD: Kd=5.6nM
    PDBbind: -logKd/Ki=8.25, Kd=5.6nM
    11008 3ugc:A (1.34) BS01 046 2.7.10.2 GO:0004672 ... O60674 22684457 PDBbind: -logKd/Ki=6.02, IC50=0.947uM
    11009 3uh2:A (2.0) BS02 P34 2.4.2.-
    2.4.2.30    		 GO:0003950 ... O95271 22297980 MOAD: ic50=1uM
    PDBbind: -logKd/Ki=6.00, IC50=1.0uM
    BindingDB: IC50=39nM
    11010 3uh2:A (2.0) BS03 P34 2.4.2.-
    2.4.2.30    		 GO:0003950 ... O95271 22297980 MOAD: ic50=1uM
    PDBbind: -logKd/Ki=6.00, IC50=1.0uM
    BindingDB: IC50=39nM
    11011 3uh4:A (2.0) BS02 XAV 2.4.2.-
    2.4.2.30    		 GO:0003950 ... O95271 22297980 MOAD: ic50=0.011uM
    PDBbind: -logKd/Ki=7.96, IC50=0.011uM
    BindingDB: IC50=11nM, Kd=100nM
    11012 3uhm:A (1.26) BS02 RFN 3.5.1.108 GO:0006796 ... P47205 22257165 MOAD: ic50=3.6nM
    PDBbind: -logKd/Ki=8.44, IC50=3.6nM
    BindingDB: IC50=3.6nM
    11013 3ui7:A (2.28) BS01 C1L 3.1.4.17 GO:0004114 ... Q9Y233 22142545 MOAD: Ki=1nM
    PDBbind: -logKd/Ki=9.00, Ki=1nM
    BindingDB: Ki=1nM
    11014 3uib:A (2.65) BS01 SB2 2.7.11.1 GO:0004672 ... Q4QHJ8 22884419 PDBbind: -logKd/Ki=6.80, Kd=0.16uM
    11015 3uix:A (2.2) BS01 Q17 2.7.11.1 GO:0004672 ... P11309 22306408 MOAD: ic50=0.151uM
    PDBbind: -logKd/Ki=6.82, IC50=0.151uM
    11016 3uj9:A (1.24) BS01 PC 2.1.1.103 GO:0000139 ... Q8IDQ9 22117061 MOAD: Kd=23.4uM
    PDBbind: -logKd/Ki=4.63, Kd=23.4uM
    11017 3ujb:A (1.521) BS02 SAH 2.1.1.103 GO:0000139 ... Q8IDQ9 22117061 PDBbind: -logKd/Ki=5.10, Kd=7.9uM
    11018 3ujc:A (1.19) BS01 PC 2.1.1.103 GO:0000139 ... Q8IDQ9 22117061 MOAD: Kd=26uM
    PDBbind: -logKd/Ki=4.59, Kd=26uM
    11019 3ujd:A (1.5) BS01 PC 2.1.1.103 GO:0000139 ... Q8IDQ9 22117061 MOAD: Kd=20.2uM
    PDBbind: -logKd/Ki=4.69, Kd=20.2uM
    11020 3ukr:A (2.48) BS01 CKH ? GO:0003779 ... P61157 22623398 PDBbind: -logKd/Ki=4.92, IC50=12uM
    11021 3ukr:B (2.48) BS01 CKH ? GO:0003779 ... A7MB62 22623398 MOAD: ic50=12uM
    PDBbind: -logKd/Ki=4.92, IC50=12uM
    11022 3uli:A (2.0) BS01 1N3 2.7.11.22 GO:0000082 ... P24941 22305584 MOAD: ic50=0.07uM
    PDBbind: -logKd/Ki=7.15, IC50=70nM
    11023 3umo:A (1.696) BS01 ATP 2.7.1.11 GO:0000287 ... P06999 23823238 PDBbind: -logKd/Ki=3.89, Ki=129uM
    11024 3umo:A (1.696) BS02 ATP 2.7.1.11 GO:0000287 ... P06999 23823238 PDBbind: -logKd/Ki=3.89, Ki=129uM
    11025 3umo:A (1.696) BS03 ATP 2.7.1.11 GO:0000287 ... P06999 23823238 PDBbind: -logKd/Ki=3.89, Ki=129uM
    11026 3umo:B (1.696) BS01 ATP 2.7.1.11 GO:0000287 ... P06999 23823238 PDBbind: -logKd/Ki=3.89, Ki=129uM
    11027 3umo:B (1.696) BS02 ATP 2.7.1.11 GO:0000287 ... P06999 23823238 PDBbind: -logKd/Ki=3.89, Ki=129uM
    11028 3umo:B (1.696) BS03 ATP 2.7.1.11 GO:0000287 ... P06999 23823238 PDBbind: -logKd/Ki=3.89, Ki=129uM
    11029 3ump:A (1.849) BS01 ATP 2.7.1.11 GO:0000287 ... P06999 23823238 PDBbind: -logKd/Ki=2.99, Ki=1026uM
    11030 3ump:A (1.849) BS02 ATP 2.7.1.11 GO:0000287 ... P06999 23823238 PDBbind: -logKd/Ki=2.99, Ki=1026uM
    11031 3ump:B (1.849) BS01 ATP 2.7.1.11 GO:0000287 ... P06999 23823238 PDBbind: -logKd/Ki=2.99, Ki=1026uM
    11032 3ump:B (1.849) BS02 ATP 2.7.1.11 GO:0000287 ... P06999 23823238 PDBbind: -logKd/Ki=2.99, Ki=1026uM
    11033 3umw:A (2.08) BS01 596 2.7.11.1 GO:0004672 ... P11309 22540945 MOAD: ic50=3nM
    PDBbind: -logKd/Ki=8.52, IC50=3nM
    BindingDB: IC50=6nM
    11034 3umx:A (2.55) BS01 Q18 2.7.11.1 GO:0004672 ... P11309 22869110 PDBbind: -logKd/Ki=6.62, IC50=0.24uM
    BindingDB: IC50=410nM
    11035 3unj:A (1.9001) BS01 0BX 2.7.11.22 GO:0000082 ... P24941 22248356 MOAD: ic50=11uM
    PDBbind: -logKd/Ki=4.96, IC50=11uM
    11036 3unk:A (2.1) BS01 0BY 2.7.11.22 GO:0000082 ... P24941 22248356 MOAD: ic50=15uM
    PDBbind: -logKd/Ki=4.82, IC50=15uM
    11037 3unz:A (2.8) BS01 0BZ 2.7.11.1 GO:0000212 ... O14965 22248356 PDBbind: -logKd/Ki=7.80, Kd=16nM
    BindingDB: IC50=3.7nM, Kd=16nM
    11038 3uo4:A (2.45) BS01 0C0 2.7.11.1 GO:0000212 ... O14965 22248356 MOAD: Kd=299nM
    PDBbind: -logKd/Ki=6.52, Kd=299nM
    BindingDB: IC50=149.0nM, Kd=299nM
    11039 3uo5:A (2.7012) BS01 0BX 2.7.11.1 GO:0000212 ... O14965 22248356 PDBbind: -logKd/Ki=7.41, Kd=39nM
    BindingDB: IC50=10.0nM, Kd=39nM
    11040 3uo6:A (2.8002) BS01 0BY 2.7.11.1 GO:0000212 ... O14965 22248356 PDBbind: -logKd/Ki=7.82, Kd=15nM
    BindingDB: IC50=2.5nM, Kd=15nM
    11041 3uo9:A (2.3) BS01 04A 3.5.1.2 GO:0004359 ... O94925 22049910 PDBbind: -logKd/Ki=7.10, IC50=0.08uM
    BindingDB: IC50=100nM, Kd=200nM
    11042 3uo9:B (2.3) BS01 04A 3.5.1.2 GO:0004359 ... O94925 22049910 MOAD: ic50=0.08uM
    PDBbind: -logKd/Ki=7.10, IC50=0.08uM
    BindingDB: IC50=100nM, Kd=200nM
    11043 3uo9:D (2.3) BS01 04A 3.5.1.2 GO:0004359 ... O94925 22049910 PDBbind: -logKd/Ki=7.10, IC50=0.08uM
    BindingDB: IC50=100nM, Kd=200nM
    11044 3uod:A (2.5002) BS01 0C3 2.7.11.1 GO:0000212 ... O14965 22248356 MOAD: Kd=49nM
    PDBbind: -logKd/Ki=7.31, Kd=49nM
    BindingDB: IC50=35.0nM, Kd=49nM
    11045 3uoh:A (2.8002) BS01 0C4 2.7.11.1 GO:0000212 ... O14965 22248356 PDBbind: -logKd/Ki=7.89, Kd=13nM
    BindingDB: IC50=2.1nM, Kd=13nM
    11046 3uoj:A (2.9003) BS01 0C5 2.7.11.1 GO:0000212 ... O14965 22248356 PDBbind: -logKd/Ki=7.29, Kd=51nM
    BindingDB: IC50=43nM, Kd=51nM
    11047 3uok:A (2.9506) BS01 0C6 2.7.11.1 GO:0000212 ... O14965 22248356 PDBbind: -logKd/Ki=9.10, IC50=0.8nM
    BindingDB: IC50=0.8nM
    11048 3uol:A (2.4) BS01 0C7 2.7.11.1 GO:0000212 ... O14965 22248356 MOAD: ic50=3.1nM
    PDBbind: -logKd/Ki=8.51, IC50=3.1nM
    BindingDB: IC50=3.1nM, Kd=18nM
    11049 3up2:A (2.3001) BS01 0C8 2.7.11.1 GO:0000212 ... O14965 22248356 MOAD: Kd=40nM
    PDBbind: -logKd/Ki=7.40, Kd=40nM
    BindingDB: IC50=28nM, Kd=40nM
    11050 3up7:A (3.05) BS01 0C9 2.7.11.1 GO:0000212 ... O14965 22803810 PDBbind: -logKd/Ki=8.21, IC50=6.1nM
    BindingDB: IC50=6.1nM, Kd=34nM
    11051 3upf:A (2.6) BS01 0BU 2.7.7.48
    3.4.22.66
    3.6.1.15    		 GO:0003723 ... Q80J95 22446684 PDBbind: -logKd/Ki=6.70, IC50=200nM
    11052 3uph:A (2.0) BS01 0C1 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... O92972 22220815 MOAD: ic50=15nM
    PDBbind: -logKd/Ki=7.82, IC50=15nM
    11053 3upi:A (2.0) BS01 0C2 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... O92972 22220815 MOAD: ic50=6nM
    PDBbind: -logKd/Ki=8.22, IC50=6nM
    11054 3upk:A (2.0) BS01 UD1 2.5.1.7 GO:0003824 ... P33038 22378791 PDBbind: -logKd/Ki=4.30, Kd=50uM
    11055 3upx:A (2.27) BS01 B6A 2.7.11.17 GO:0004672 ... Q9BJF5 22369268 MOAD: Ki=0.0075uM
    PDBbind: -logKd/Ki=8.12, Ki=7.5nM
    BindingDB: IC50=15nM
    11056 3upy:A (1.8) BS02 FOM ? GO:0016491 ... Q2YIM3 22442144 MOAD: ic50=2.39uM
    PDBbind: -logKd/Ki=5.62, IC50=2.39uM
    11057 3upz:A (2.2) BS01 B5A 2.7.11.17 GO:0004672 ... Q9BJF5 22369268 PDBbind: -logKd/Ki=5.60, Ki>2.5uM
    11058 3uqf:A (2.27) BS01 BK5 2.7.10.2 GO:0004672 ... P00523 22369268 MOAD: Ki=0.2uM
    PDBbind: -logKd/Ki=4.70, Ki>20uM
    11059 3uqg:A (2.2) BS01 B5A 2.7.10.2 GO:0004672 ... P00523 22369268 PDBbind: -logKd/Ki=5.00, Ki>10uM
    11060 3ur0:B (2.45) BS01 SVR 2.7.7.48
    3.4.22.66
    3.6.1.15    		 GO:0003723 ... Q80J95 22446684 MOAD: ic50=70nM
    PDBbind: -logKd/Ki=7.15, IC50=70nM
    11061 3ur9:A (1.65) BS01 K36 2.7.7.48
    3.4.22.66
    3.6.1.15    		 GO:0004197 ... Q83883 22915796 PDBbind: -logKd/Ki=6.31, IC50=0.49uM
    11062 3usn:A (-1.00) BS06 ATT 3.4.24.17 GO:0004222 ... P08254 9827994 PDBbind: -logKd/Ki=6.15, Ki=710nM
    BindingDB: Ki=710nM
    11063 3usx:B (2.28) BS01 MYR ? GO:0001818 ... Q9GK12 23149273 PDBbind: -logKd/Ki=5.02, Kd=9.53uM
    11064 3utu:H (1.55) BS03 1TS 3.4.21.5 GO:0004252 ... P00734 22907907 MOAD: Ki=0.012nM
    PDBbind: -logKd/Ki=10.92, Ki=0.012nM
    11065 3uu1:A (1.82) BS04 14B 2.4.2.18 GO:0000162 ... P9WFX5 23363292 PDBbind: -logKd/Ki=5.20, Ki=6.3uM
    11066 3uug:A (1.75) BS01 BDP ? N/A P25548 23267119 PDBbind: -logKd/Ki=4.51, Kd=0.031mM
    11067 3uuo:A (2.11) BS01 0CV 3.1.4.17 GO:0004114 ... Q9Y233 22222034 MOAD: Ki=11nM
    PDBbind: -logKd/Ki=7.96, Ki=11nM
    BindingDB: Ki=11nM, IC50=858nM
    11068 3uvp:A (2.4) BS01 048 2.7.11.24 GO:0000077 ... Q16539 22897496 MOAD: ic50=0.035uM
    PDBbind: -logKd/Ki=7.46, IC50=0.035uM
    BindingDB: IC50=35nM
    11069 3uvq:A (2.2) BS01 FS8 2.7.11.24 GO:0000077 ... Q16539 23270382 PDBbind: -logKd/Ki=7.77, Kd=17nM
    BindingDB: IC50=1.000000nM
    11070 3uwk:A (1.91) BS01 0DF 2.7.4.9 GO:0004798 ... Q9HZN8 22243413 MOAD: ic50=58uM
    PDBbind: -logKd/Ki=4.24, IC50=58uM
    11071 3uwo:A (1.7) BS01 0DJ 2.7.4.9 GO:0004798 ... Q9HZN8 22243413 MOAD: ic50=0.44uM
    PDBbind: -logKd/Ki=6.36, IC50=0.44uM
    11072 3uxd:A (1.8) BS01 0CU N/A GO:0004425 ... N/A 22685214 PDBbind: -logKd/Ki=4.41, Ki=39.3uM
    11073 3uxk:A (2.201) BS02 BHO 5.1.2.2 GO:0000287 ... P11444 22264153 MOAD: Ki=11.7uM
    PDBbind: -logKd/Ki=4.93, Ki=11.7uM
    BindingDB: Ki=12000nM
    11074 3uxk:C (2.201) BS02 BHO 5.1.2.2 GO:0000287 ... P11444 22264153 MOAD: Ki=11.7uM
    PDBbind: -logKd/Ki=4.93, Ki=11.7uM
    BindingDB: Ki=12000nM
    11075 3uxl:A (2.201) BS02 CFI 5.1.2.2 GO:0000287 ... P11444 22264153 MOAD: Ki=2.7uM
    PDBbind: -logKd/Ki=5.57, Ki=2.7uM
    BindingDB: Ki=2670nM
    11076 3uxl:C (2.201) BS02 CFI 5.1.2.2 GO:0000287 ... P11444 22264153 MOAD: Ki=2.7uM
    PDBbind: -logKd/Ki=5.57, Ki=2.7uM
    BindingDB: Ki=2670nM
    11077 3uxm:A (1.95) BS03 0DN 2.7.4.9 GO:0004798 ... Q9HZN8 22243413 MOAD: ic50=20uM
    PDBbind: -logKd/Ki=4.70, IC50=20uM
    11078 3uyt:A (2.0) BS01 0CK 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P48730 22168824 PDBbind: -logKd/Ki=7.85, IC50~14nM
    BindingDB: IC50=13nM
    11079 3uz5:A (1.9) BS01 0CU N/A GO:0004425 ... N/A 22685214 PDBbind: -logKd/Ki=7.22, Ki=0.06uM
    11080 3uza:A (3.273) BS01 T4G ? GO:0001609 ... P29274 22220592 PDBbind: -logKd/Ki=8.94, Kd=1.16nM
    BindingDB: Ki=7.76nM
    11081 3uzc:A (3.341) BS01 T4E ? GO:0001609 ... P29274 22220592 PDBbind: -logKd/Ki=9.61, Kd=0.248nM
    BindingDB: Ki=1.41nM
    11082 3uzj:A (1.69) BS01 0CT N/A GO:0004425 ... N/A 22685214 PDBbind: -logKd/Ki=5.55, Ki=2.82uM
    11083 3uzp:A (1.94) BS01 0CK 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P48730 22168824 PDBbind: -logKd/Ki=7.89, IC50=13nM
    BindingDB: IC50=13nM
    11084 3uzt:A (3.51) BS01 rna 2.7.11.15 GO:0001664 ... P21146 22727813 PDBbind: Kd=35nM
    11085 3v01:A (2.705) BS01 3V0 2.7.12.2 GO:0004672 ... Q02750 22506516 PDBbind: -logKd/Ki=7.60, IC50=25nM
    BindingDB: IC50=25nM, EC50=6.3nM
    11086 3v04:A (2.7) BS01 V04 2.7.12.2 GO:0004672 ... Q02750 22506516 PDBbind: -logKd/Ki=7.89, IC50=13nM
    BindingDB: EC50=0.4nM, IC50=13nM
    11087 3v0l:A (1.75) BS02 2GW 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 23836908 MOAD: Ki=3uM
    PDBbind: -logKd/Ki=5.52, Ki=3.0uM
    11088 3v0p:A (1.9) BS02 4GW 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 23836908 PDBbind: -logKd/Ki=6.28, Ki=0.53uM
    11089 3v11:A (5.0) BS02 rna 3.6.5.3 GO:0000049 ... Q980A5 22447243 PDBbind: Kd=1nM
    11090 3v11:B (5.0) BS01 rna ? GO:0003676 ... Q97Z79 22447243 PDBbind: Kd=1nM
    11091 3v1r:A (2.8) BS03 JTH 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... Q2F7J3 22366278 PDBbind: -logKd/Ki=7.68, IC50=21nM
    11092 3v2w:A (3.35) BS01 ML5 3.2.1.17 GO:0003796 ... P00720
    P21453    		 22344443 PDBbind: -logKd/Ki=7.11, Ki=77nM
    11093 3v3l:A (1.65) BS01 V3L 2.3.2.27 GO:0008270 ... Q9NTX7 22267412 MOAD: Kd~370nM
    PDBbind: -logKd/Ki=6.43, Kd=0.37uM
    11094 3v3l:A (1.65) BS02 V3L 2.3.2.27 GO:0008270 ... Q9NTX7 22267412 MOAD: Kd~370nM
    PDBbind: -logKd/Ki=6.43, Kd=0.37uM
    11095 3v3m:A (1.96) BS01 0EN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69    		 GO:0008233 ... P0C6U8 23231439 MOAD: ic50=4.8uM
    PDBbind: -logKd/Ki=5.32, IC50=4.8uM
    BindingDB: IC50=1500nM
    11096 3v3q:A (2.22) BS01 TMY ? GO:0003677 ... P22736 22983157 PDBbind: -logKd/Ki=6.60, Kd=0.25uM
    11097 3v3q:A (2.22) BS02 TMY ? GO:0003677 ... P22736 22983157 PDBbind: -logKd/Ki=6.60, Kd=0.25uM
    11098 3v3v:A (2.7) BS02 MYU 2.7.11.24 GO:0004672 ... P45983 23142567 PDBbind: -logKd/Ki=5.34, IC50=4.6uM
    11099 3v49:A (1.7) BS02 PK0 ? N/A P10275 22897611 MOAD: ic50=9.6nM
    PDBbind: -logKd/Ki=8.02, IC50=9.6nM
    BindingDB: IC50=9.6nM
    11100 3v4j:A (2.04) BS03 PQR 3.5.4.38 GO:0003824 ... Q9HC16 22181350 PDBbind: -logKd/Ki=5.04, IC50=9.1uM
    11101 3v4t:A (2.5) BS01 UD1 2.5.1.7 GO:0003824 ... P33038 22378791 PDBbind: -logKd/Ki=4.11, Kd=77uM
    11102 3v4t:B (2.5) BS01 UD1 2.5.1.7 GO:0003824 ... P33038 22378791 PDBbind: -logKd/Ki=4.11, Kd=77uM
    11103 3v4t:D (2.5) BS01 UD1 2.5.1.7 GO:0003824 ... P33038 22378791 PDBbind: -logKd/Ki=4.11, Kd=77uM
    11104 3v4v:A (3.1) BS04 0DU ? GO:0007155 ... P13612 22232704 PDBbind: -logKd/Ki=7.38, IC50=42nM
    BindingDB: IC50=32nM
    11105 3v4v:B (3.1) BS04 0DU ? N/A P26010 22232704 PDBbind: -logKd/Ki=7.38, IC50=42nM
    BindingDB: IC50=42nM
    11106 3v4x:A (1.952) BS01 F24 2.3.3.10 GO:0004421 ... Q9FD71 22510038 PDBbind: -logKd/Ki=6.15, Ki=700nM
    11107 3v51:A (1.95) BS01 I76 2.7.11.17 GO:0004672 ... Q9BJF5 22369268 PDBbind: -logKd/Ki=8.55, Ki=2.8nM
    BindingDB: IC50=5.50nM
    11108 3v5g:A (1.5) BS02 0F3 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 22775345 MOAD: Ki=74nM
    PDBbind: -logKd/Ki=7.13, Ki=74nM
    BindingDB: Ki=74nM
    11109 3v5g:A (1.5) BS03 0F3 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 22775345 MOAD: Ki=74nM
    PDBbind: -logKd/Ki=7.13, Ki=74nM
    BindingDB: Ki=74nM
    11110 3v5g:A (1.5) BS04 0F3 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 22775345 MOAD: Ki=74nM
    PDBbind: -logKd/Ki=7.13, Ki=74nM
    BindingDB: Ki=74nM
    11111 3v5j:A (2.59) BS01 0F2 2.7.10.2 GO:0004672 ... Q08881 22464456 PDBbind: -logKd/Ki=7.96, IC50=10.9nM
    BindingDB: IC50=10.9nM
    11112 3v5l:A (1.86) BS01 0G1 2.7.10.2 GO:0004672 ... Q08881 22464456 MOAD: ic50=7nM
    PDBbind: -logKd/Ki=8.15, IC50=7.0nM
    BindingDB: IC50=7nM
    11113 3v5p:A (2.1) BS01 C88 2.7.11.17 GO:0004672 ... Q9BJF5 22369268 MOAD: Ki=0.0011uM
    PDBbind: -logKd/Ki=8.96, Ki=1.1nM
    11114 3v5q:A (2.2001) BS01 0F4 2.7.10.1 GO:0004672 ... Q16288 24900443 PDBbind: -logKd/Ki=7.40, IC50=0.04uM
    BindingDB: IC50=40nM
    11115 3v5t:A (2.13) BS01 UW9 2.7.11.17 GO:0004672 ... Q9BJF5 22369268 PDBbind: -logKd/Ki=8.22, Ki=6nM
    11116 3v66:A (1.8) BS01 D3A 2.5.1.21 GO:0004310 ... P37268 22464687 MOAD: ic50=1.3nM
    PDBbind: -logKd/Ki=8.89, IC50=1.3nM
    11117 3v6r:A (2.6) BS01 CQQ 2.7.11.24 GO:0004672 ... P53779 22284361 PDBbind: -logKd/Ki=6.15, IC50=709nM
    11118 3v6s:A (2.97) BS01 0F0 2.7.11.24 GO:0004672 ... P53779 22284361 PDBbind: -logKd/Ki=9.12, IC50=0.75nM
    11119 3v6y:A (2.5) BS01 rna ? GO:0003723 ... Q09312 N/A PDBbind: Kd=3.9nM
    11120 3v71:A (2.902) BS01 rna ? GO:0003723 ... O44169 N/A PDBbind: Kd=7.4nM
    11121 3v74:A (2.3) BS01 rna ? GO:0003723 ... Q09312 N/A PDBbind: Kd=3.01nM
    11122 3v78:A (2.299) BS01 ET ? GO:0000976 ... P95092 22821564 MOAD: Kd=2.9uM
    PDBbind: -logKd/Ki=5.54, Kd=2.9uM
    11123 3v78:B (2.299) BS01 ET ? GO:0000976 ... P95092 22821564 MOAD: Kd=2.9uM
    PDBbind: -logKd/Ki=5.54, Kd=2.9uM
    11124 3v7c:A (2.7) BS01 C77 N/A GO:0004077 ... N/A 22437830 PDBbind: -logKd/Ki=5.74, Ki=1.83uM
    11125 3v7e:A (2.8) BS01 rna ? GO:0003723 ... P46350 22355167 PDBbind: Kd=270nM
    11126 3v7e:B (2.8) BS01 rna ? GO:0003723 ... P46350 22355167 PDBbind: Kd=270nM
    11127 3v7s:A (3.1) BS01 36F N/A GO:0004077 ... N/A 22437830 PDBbind: -logKd/Ki=7.05, Ki=0.09uM
    11128 3v7t:A (2.09) BS01 0GX 3.4.21.59 GO:0004252 ... P20231 22264487 MOAD: Ki=62nM
    PDBbind: -logKd/Ki=7.21, Ki=62nM
    11129 3v7t:A (2.09) BS03 0GX 3.4.21.59 GO:0004252 ... P20231 22264487 MOAD: Ki=62nM
    PDBbind: -logKd/Ki=7.21, Ki=62nM
    11130 3v7t:C (2.09) BS01 0GX 3.4.21.59 GO:0004252 ... P20231 22264487 MOAD: Ki=62nM
    PDBbind: -logKd/Ki=7.21, Ki=62nM
    11131 3v7t:C (2.09) BS02 0GX 3.4.21.59 GO:0004252 ... P20231 22264487 MOAD: Ki=62nM
    PDBbind: -logKd/Ki=7.21, Ki=62nM
    11132 3v7x:A (1.03) BS02 D7A 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 22443141 MOAD: Ki=2.7nM
    PDBbind: -logKd/Ki=8.57, Ki=2.7nM
    BindingDB: Ki=2.7nM
    11133 3v8s:A (2.286) BS01 0HD 2.7.11.1 GO:0004672 ... Q13464 22272748 MOAD: ic50=0.65uM
    PDBbind: -logKd/Ki=6.19, IC50=0.65uM
    BindingDB: IC50=650nM
    11134 3v8t:A (2.0) BS01 477 2.7.10.2 GO:0004672 ... Q08881 22464456 MOAD: ic50=0.3nM
    PDBbind: -logKd/Ki=9.52, IC50=0.3nM
    11135 3v8w:A (2.27) BS01 0G2 2.7.10.2 GO:0004672 ... Q08881 22464456 MOAD: ic50=8.6nM
    PDBbind: -logKd/Ki=8.07, IC50=8.6nM
    11136 3v9b:A (2.1) BS01 IHM 3.1.4.53 GO:0004114 ... Q08499 22371117 PDBbind: -logKd/Ki=9.30, IC50=0.5nM
    BindingDB: IC50=500nM
    11137 3vap:A (2.66) BS01 0FY 2.7.11.1 GO:0000212 ... O14965 22503250 PDBbind: -logKd/Ki=8.40, IC50<4nM
    11138 3vbd:A (1.05) BS02 0FZ 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 22443141 MOAD: Ki=8.6nM
    PDBbind: -logKd/Ki=8.07, Ki=8.6nM
    BindingDB: Ki=8.6nM
    11139 3vbg:A (2.8) BS01 03M 2.3.2.27 GO:0005634 ... Q00987 22745160 PDBbind: -logKd/Ki=7.48, IC50=33nM
    11140 3vbg:A (2.8) BS02 03M 2.3.2.27 GO:0005634 ... Q00987 22745160 PDBbind: -logKd/Ki=7.48, IC50=33nM
    11141 3vbg:B (2.8) BS01 03M 2.3.2.27 GO:0005634 ... Q00987 22745160 PDBbind: -logKd/Ki=7.48, IC50=33nM
    11142 3vbg:B (2.8) BS02 03M 2.3.2.27 GO:0005634 ... Q00987 22745160 PDBbind: -logKd/Ki=7.48, IC50=33nM
    11143 3vbq:A (1.85) BS01 0F5 2.7.11.1 GO:0004672 ... P11309 22339127 MOAD: ic50=470pM
    PDBbind: -logKd/Ki=9.33, IC50=470pM
    11144 3vbt:A (2.23) BS01 0F9 2.7.11.1 GO:0004672 ... P11309 22339127 MOAD: ic50=37uM
    PDBbind: -logKd/Ki=4.43, IC50=37uM
    BindingDB: IC50=37000nM
    11145 3vbv:A (2.08) BS01 0FK 2.7.11.1 GO:0004672 ... P11309 22339127 MOAD: ic50=10uM
    PDBbind: -logKd/Ki=5.00, IC50=10uM
    BindingDB: IC50=10000nM
    11146 3vbw:A (2.48) BS01 0FN 2.7.11.1 GO:0004672 ... P11309 22339127 MOAD: ic50=6uM
    PDBbind: -logKd/Ki=5.22, IC50=6uM
    BindingDB: IC50=6000nM
    11147 3vbx:A (2.03) BS01 0FO 2.7.11.1 GO:0004672 ... P11309 22339127 MOAD: ic50=17uM
    PDBbind: -logKd/Ki=4.77, IC50=17uM
    BindingDB: IC50=17000nM
    11148 3vby:A (2.27) BS01 0FR 2.7.11.1 GO:0004672 ... P11309 22339127 MOAD: ic50=28uM
    PDBbind: -logKd/Ki=4.55, IC50=28uM
    BindingDB: IC50=28000nM
    11149 3vc4:A (2.23) BS01 0FS 2.7.11.1 GO:0004672 ... P11309 22339127 MOAD: ic50=24nM
    PDBbind: -logKd/Ki=7.62, IC50=24nM
    BindingDB: IC50=17nM
    11150 3vd4:A (2.0) BS03 IPT 3.2.1.23 GO:0000287 ... P00722 22446164 MOAD: Ki=0.015mM
    PDBbind: -logKd/Ki=4.82, Ki=0.015mM
    BindingDB: Ki=7.6e+4nM
    11151 3vd4:D (2.0) BS03 IPT 3.2.1.23 GO:0000287 ... P00722 22446164 MOAD: Ki=0.015mM
    PDBbind: -logKd/Ki=4.82, Ki=0.015mM
    BindingDB: Ki=7.6e+4nM
    11152 3vd7:A (2.87) BS01 GTZ 3.2.1.23 GO:0000287 ... P00722 22446164 PDBbind: -logKd/Ki=4.48, Ki=0.033mM
    11153 3vd7:D (2.87) BS01 GTZ 3.2.1.23 GO:0000287 ... P00722 22446164 PDBbind: -logKd/Ki=4.48, Ki=0.033mM
    11154 3vd9:A (2.05) BS03 IPT 3.2.1.23 GO:0000287 ... P00722 22446164 MOAD: Ki=0.1mM
    PDBbind: -logKd/Ki=4.00, Ki=0.10mM
    BindingDB: Ki=7.6e+4nM
    11155 3vd9:D (2.05) BS03 IPT 3.2.1.23 GO:0000287 ... P00722 22446164 MOAD: Ki=0.1mM
    PDBbind: -logKd/Ki=4.00, Ki=0.10mM
    BindingDB: Ki=7.6e+4nM
    11156 3vdb:A (2.05) BS01 149 3.2.1.23 GO:0000287 ... P00722 22446164 MOAD: Ki=3.03mM
    PDBbind: -logKd/Ki=2.52, Ki=3.03mM
    11157 3vdb:D (2.05) BS01 149 3.2.1.23 GO:0000287 ... P00722 22446164 MOAD: Ki=3.03mM
    PDBbind: -logKd/Ki=2.52, Ki=3.03mM
    11158 3vdc:A (2.55) BS01 IPT 3.2.1.23 GO:0000287 ... P00722 22446164 PDBbind: -logKd/Ki=4.92, Ki=0.012mM
    BindingDB: Ki=7.6e+4nM
    11159 3vdc:D (2.55) BS01 IPT 3.2.1.23 GO:0000287 ... P00722 22446164 PDBbind: -logKd/Ki=4.92, Ki=0.012mM
    BindingDB: Ki=7.6e+4nM
    11160 3veh:A (2.0) BS01 0GA 4.2.99.21
    5.4.4.2
    5.4.99.5    		 GO:0000162 ... P9WFX1 22607697 MOAD: Ki=11uM
    PDBbind: -logKd/Ki=4.96, Ki=11uM
    11161 3veu:A (1.52) BS01 0GO 3.4.23.46 GO:0004190 ... P56817 22380629 MOAD: ic50=55nM
    PDBbind: -logKd/Ki=7.26, IC50=55nM
    11162 3vf3:A (1.48) BS01 0GS 3.4.23.46 GO:0004190 ... P56817 22380629 MOAD: ic50=1.37uM
    PDBbind: -logKd/Ki=5.86, IC50=1.37uM
    11163 3vf5:A (1.25) BS01 031 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 22401672 PDBbind: -logKd/Ki=9.34, Ki=0.46nM
    11164 3vf5:B (1.25) BS01 031 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 22401672 PDBbind: -logKd/Ki=9.34, Ki=0.46nM
    11165 3vf7:A (1.3) BS01 031 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 22401672 PDBbind: -logKd/Ki=9.10, Ki=0.80nM
    11166 3vf7:B (1.3) BS01 031 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 22401672 PDBbind: -logKd/Ki=9.10, Ki=0.80nM
    11167 3vf8:A (2.08) BS01 0JE 2.7.10.2 GO:0004672 ... P43405 22464456 MOAD: ic50=150nM
    PDBbind: -logKd/Ki=6.82, IC50=150nM
    11168 3vf9:A (2.3) BS01 477 2.7.10.2 GO:0004672 ... P43405 22464456 MOAD: ic50=358.2nM
    PDBbind: -logKd/Ki=8.72, IC50=1.9nM
    11169 3vfa:A (1.43) BS01 031 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P0C6F2 22401672 PDBbind: -logKd/Ki=9.19, Ki=0.65nM
    11170 3vfa:B (1.43) BS01 031 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P0C6F2 22401672 PDBbind: -logKd/Ki=9.19, Ki=0.65nM
    11171 3vfb:A (1.55) BS01 031 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 22401672 PDBbind: -logKd/Ki=9.04, Ki=0.92nM
    11172 3vfb:B (1.55) BS01 031 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 22401672 PDBbind: -logKd/Ki=9.04, Ki=0.92nM
    11173 3vfq:A (2.8) BS01 AR6 2.4.2.- N/A Q460N5 23473667 PDBbind: -logKd/Ki=5.19, Kd=6.4uM
    11174 3vg1:A (1.77) BS01 0GT 3.4.23.46 GO:0004190 ... P56817 22380629 MOAD: ic50=0.055uM
    PDBbind: -logKd/Ki=7.26, IC50=0.055uM
    11175 3vgc:C (1.67) BS02 SRB 3.4.21.1 GO:0004252 ... P00766 9425066 PDBbind: -logKd/Ki=5.51, Ki=3.11uM
    11176 3vh9:A (1.29) BS03 HQY 3.4.11.10 GO:0006508 ... Q01693 22311113 MOAD: Ki=0.58uM
    PDBbind: -logKd/Ki=6.24, Ki=0.58uM
    11177 3vha:A (1.39) BS01 VHA 3.6.4.10 GO:0005524 ... P07900 22192591 MOAD: Kd=40nM
    PDBbind: -logKd/Ki=7.40, Kd=40nM
    BindingDB: Kd=40nM
    11178 3vhc:A (1.41) BS01 VHC 3.6.4.10 GO:0005524 ... P07900 22192591 MOAD: Kd=1.3nM
    PDBbind: -logKd/Ki=8.89, Kd=1.3nM
    BindingDB: Kd=1.3nM
    11179 3vhd:A (1.52) BS01 VHE 3.6.4.10 GO:0005524 ... P07900 22192591 MOAD: Kd=0.52nM
    PDBbind: -logKd/Ki=9.28, Kd=0.52nM
    BindingDB: Kd=0.52nM
    11180 3vhe:A (1.55) BS01 42Q 2.7.10.1 GO:0004672 ... P35968 20833055 MOAD: ic50=6.2nM
    PDBbind: -logKd/Ki=8.21, IC50=6.2nM
    BindingDB: Ki=4.6nM, Kd=19nM, IC50=4.7nM
    11181 3vhk:A (2.49) BS01 BPK 2.7.10.1 GO:0004672 ... P35968 24900475 PDBbind: -logKd/Ki=4.60, Ki=25uM
    BindingDB: Ki=25000nM, IC50=100000nM
    11182 3vhu:A (2.11) BS01 SNL ? N/A P08235 22074142 MOAD: ic50=49nM
    PDBbind: -logKd/Ki=7.31, IC50=49nM
    BindingDB: IC50=11nM, Ki=2.323nM
    11183 3vhv:A (1.35) BS01 LD1 ? N/A P08235 22074142 MOAD: ic50=510nM
    PDBbind: -logKd/Ki=6.29, IC50=510nM
    BindingDB: IC50=510nM
    11184 3vi2:A (2.1) BS01 HMZ 4.1.1.23 GO:0004590 ... Q8T6J6 22740703 PDBbind: -logKd/Ki=3.77, IC50=170uM
    11185 3vi2:B (2.1) BS01 HMZ 4.1.1.23 GO:0004590 ... Q8T6J6 22740703 PDBbind: -logKd/Ki=3.77, IC50=170uM
    11186 3vi5:D (2.0) BS01 M4M 2.5.1.18
    5.3.99.2    		 GO:0000287 ... O60760 22418579 PDBbind: -logKd/Ki=5.68, IC50=2.1uM
    11187 3vi7:A (2.0) BS02 CBD 2.5.1.18
    5.3.99.2    		 GO:0000287 ... O60760 22418579 PDBbind: -logKd/Ki=7.39, IC50=40.4nM
    BindingDB: IC50=2E2nM
    11188 3vid:A (2.3) BS01 4TT 2.7.10.1 GO:0004672 ... P35968 24900475 PDBbind: -logKd/Ki=6.21, IC50=620nM
    11189 3vjc:A (1.89) BS01 ZGA 2.5.1.21 GO:0004310 ... P37268 22474324 PDBbind: -logKd/Ki=7.72, Kd=18.9nM
    BindingDB: IC50=5nM
    11190 3vjc:B (1.89) BS01 ZGA 2.5.1.21 GO:0004310 ... P37268 22474324 PDBbind: -logKd/Ki=7.72, Kd=18.9nM
    BindingDB: IC50=5nM
    11191 3vje:A (2.12) BS01 ZGA 2.5.1.96 GO:0003824 ... A9JQL9 22474324 PDBbind: -logKd/Ki=8.01, Kd=9.7nM
    11192 3vjk:A (2.49) BS01 M51 3.4.14.5 GO:0001618 ... P27487 22959556 MOAD: ic50=0.37nM
    PDBbind: -logKd/Ki=9.43, IC50=0.37nM
    BindingDB: Kd=12nM, IC50=0.37nM
    11193 3vjl:A (2.393) BS01 W94 3.4.14.5 GO:0001618 ... P27487 22959556 MOAD: ic50=5.6nM
    PDBbind: -logKd/Ki=8.25, IC50=5.6nM
    BindingDB: IC50=5.6nM
    11194 3vjm:A (2.1) BS01 W61 3.4.14.5 GO:0001618 ... P27487 22824762 MOAD: ic50=0.37nM
    PDBbind: -logKd/Ki=9.43, IC50=0.37nM
    BindingDB: IC50=0.37nM
    11195 3vjs:A (1.93) BS02 10S ? GO:0003677 ... P13053 22066785 MOAD: ic50=0.64uM
    PDBbind: -logKd/Ki=6.19, IC50=0.64uM
    11196 3vjt:A (2.0) BS02 10R ? GO:0003677 ... P13053 22066785 MOAD: ic50=4.1uM
    PDBbind: -logKd/Ki=5.39, IC50=4.1uM
    11197 3vnt:A (1.64) BS01 0JA 2.7.10.1 GO:0004672 ... P35968 22376051 MOAD: ic50=2.2nM
    PDBbind: -logKd/Ki=8.66, IC50=2.2nM
    11198 3vo3:A (1.52) BS01 0KF 2.7.10.1 GO:0004672 ... P35968 23498918 MOAD: ic50=1.4nM
    PDBbind: -logKd/Ki=8.85, IC50=1.4nM
    BindingDB: IC50=1.8nM
    11199 3vok:A (2.0) BS01 dna ? GO:0003677 ... Q9CHR1 22798069 PDBbind: Kd=0.2nM
    11200 3voz:A (2.4) BS01 04A 3.5.1.2 GO:0004359 ... O94925 22538822 MOAD: ic50=0.14uM
    PDBbind: -logKd/Ki=6.85, IC50=0.14uM
    BindingDB: IC50=100nM, Kd=200nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218