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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 24809 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    10801 3th0:A (1.75) BS03 GLA 3.2.1.- N/A P12528 23292517 PDBbind: -logKd/Ki=4.12, Kd=75.8uM
    10802 3th8:B (2.114) BS01 TH9 2.5.1.31 GO:0000287 ... P60472 22662288 PDBbind: -logKd/Ki=6.25, IC50=560nM
    10803 3th9:A (1.34) BS01 9Y9 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P0C6F2 21916489 MOAD: Ki=20nM
    PDBbind: -logKd/Ki=7.70, Ki=20nM
    10804 3th9:A (1.34) BS02 9Y9 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P0C6F2 21916489 MOAD: Ki=20nM
    PDBbind: -logKd/Ki=7.70, Ki=20nM
    10805 3th9:B (1.34) BS01 9Y9 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P0C6F2 21916489 MOAD: Ki=20nM
    PDBbind: -logKd/Ki=7.70, Ki=20nM
    10806 3th9:B (1.34) BS02 9Y9 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P0C6F2 21916489 MOAD: Ki=20nM
    PDBbind: -logKd/Ki=7.70, Ki=20nM
    10807 3thb:A (2.5) BS02 3TA 2.7.11.21 GO:0004672 ... P53350 22070629 MOAD: ic50=2nM
    PDBbind: -logKd/Ki=8.70, IC50=2nM
    10808 3thd:A (1.79) BS01 DGJ 3.2.1.23 GO:0004553 ... P16278 22128166 PDBbind: -logKd/Ki=4.05, IC50=90uM
    BindingDB: IC50=90000nM
    10809 3thw:B (3.09) BS01 dna ? GO:0005524 ... P20585 22179786 PDBbind: Kd=50pM
    10810 3thx:A (2.7) BS01 dna ? GO:0000287 ... P43246 22179786 PDBbind: Kd=70pM
    10811 3thx:B (2.7) BS01 dna ? GO:0005524 ... P20585 22179786 PDBbind: Kd=70pM
    10812 3thx:B (2.7) BS02 dna ? GO:0005524 ... P20585 22179786 PDBbind: Kd=70pM
    10813 3thz:B (4.3) BS01 dna ? GO:0005524 ... P20585 22179786 PDBbind: Kd=0.1nM
    10814 3thz:B (4.3) BS02 dna ? GO:0005524 ... P20585 22179786 PDBbind: Kd=0.1nM
    10815 3ti1:A (1.99) BS01 B49 2.7.11.22 GO:0000082 ... P24941 22893598 PDBbind: -logKd/Ki=3.89, IC50=130uM
    BindingDB: Kd=>10000nM, IC50=1.30e+5nM
    10816 3ti3:A (1.8) BS03 LNV 3.2.1.18 GO:0004308 ... C3W5S3 22028647 MOAD: ic50=1.83nM
    PDBbind: -logKd/Ki=8.74, IC50=1.83nM
    10817 3ti4:A (1.602) BS03 LVO 3.2.1.18 GO:0004308 ... C3W5S3 22028647 MOAD: ic50=947nM
    PDBbind: -logKd/Ki=6.02, IC50=947nM
    10818 3ti5:A (1.9) BS03 ZMR 3.2.1.18 GO:0004308 ... C3W5S3 22028647 MOAD: ic50=1.11nM
    PDBbind: -logKd/Ki=8.95, IC50=1.11nM
    10819 3ti6:A (1.69) BS03 G39 3.2.1.18 GO:0004308 ... C3W5S3 22028647 MOAD: ic50=0.54nM
    PDBbind: -logKd/Ki=9.27, IC50=0.54nM
    10820 3ti8:A (1.601) BS02 LNV 3.2.1.18 GO:0004308 ... A1ILL9 22028647 MOAD: ic50=0.9nM
    PDBbind: -logKd/Ki=9.05, IC50=0.90nM
    10821 3tia:A (1.8) BS04 LNV 3.2.1.18 GO:0004308 ... Q194T1 22028647 MOAD: ic50=3.12nM
    PDBbind: -logKd/Ki=8.51, IC50=3.12nM
    BindingDB: IC50=3100nM
    10822 3tib:A (2.201) BS04 LVO 3.2.1.18 GO:0004308 ... Q194T1 22028647 MOAD: ic50=129nM
    PDBbind: -logKd/Ki=6.89, IC50=129nM
    10823 3tic:A (1.89) BS04 ZMR 3.2.1.18 GO:0004308 ... Q194T1 22028647 MOAD: ic50=1.36nM
    PDBbind: -logKd/Ki=8.87, IC50=1.36nM
    BindingDB: IC50=1400nM
    10824 3tif:A (1.7995) BS01 ADP ? GO:0005524 ... Q58206 22158619 PDBbind: -logKd/Ki=5.38, Kd=4.2uM
    10825 3tif:A (1.7995) BS02 ADP ? GO:0005524 ... Q58206 22158619 PDBbind: -logKd/Ki=5.38, Kd=4.2uM
    10826 3tif:B (1.7995) BS01 ADP ? GO:0005524 ... Q58206 22158619 PDBbind: -logKd/Ki=5.38, Kd=4.2uM
    10827 3tif:B (1.7995) BS02 ADP ? GO:0005524 ... Q58206 22158619 PDBbind: -logKd/Ki=5.38, Kd=4.2uM
    10828 3tiy:A (1.84) BS01 TIY 2.7.11.22 GO:0000082 ... P24941 22893598 PDBbind: -logKd/Ki=4.77, IC50=17uM
    BindingDB: IC50=1.7e+4nM
    10829 3tiz:A (2.02) BS01 3TI 2.7.11.22 GO:0000082 ... P24941 22893598 PDBbind: -logKd/Ki=3.82, IC50>150uM
    BindingDB: IC50=>1.50e+5nM
    10830 3tjc:A (2.4) BS01 0TP 2.7.10.2 GO:0004672 ... O60674 22087750 MOAD: ic50=0.031uM
    PDBbind: -logKd/Ki=7.51, IC50=31nM
    BindingDB: IC50=3940nM
    10831 3tjd:A (2.9) BS01 6TP 2.7.10.2 GO:0004672 ... O60674 22087750 PDBbind: -logKd/Ki=9.00, IC50=1.0nM
    BindingDB: IC50=1nM
    10832 3tjm:A (1.48) BS01 7FA 1.1.1.100
    1.3.1.39
    2.3.1.38
    2.3.1.39
    2.3.1.41
    2.3.1.85
    3.1.2.14
    4.2.1.59    		 GO:0009058 ... P49327 21908709 PDBbind: -logKd/Ki=5.20, Ki=6.36uM
    10833 3tk2:A (1.35) BS01 PHE 1.14.16.1 GO:0004497 ... P30967 23860686 PDBbind: -logKd/Ki=4.62, Kd=24uM
    10834 3tkh:A (1.79) BS01 07S 2.7.11.1 GO:0000077 ... O14757 22374217 MOAD: ic50=47nM
    PDBbind: -logKd/Ki=7.33, IC50=47nM
    10835 3tki:A (1.6) BS01 S25 2.7.11.1 GO:0000077 ... O14757 22374217 MOAD: ic50=0.05nM
    PDBbind: -logKd/Ki=10.30, IC50=0.05nM
    10836 3tkm:A (1.953) BS01 GW0 ? GO:0003677 ... Q03181 22606221 MOAD: Kd=22nM
    PDBbind: -logKd/Ki=9.00, IC50=1nM
    BindingDB: EC50=13nM, Kd=0.400000nM
    10837 3tku:A (2.15) BS01 M77 2.7.11.1 GO:0004672 ... Q9Y5S2 21949762 MOAD: ic50=1.92uM
    PDBbind: -logKd/Ki=5.72, IC50=1.92uM
    10838 3tkw:A (1.55) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 22242794 PDBbind: -logKd/Ki=5.27, Kd=5.4uM
    10839 3tkw:B (1.55) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 22242794 PDBbind: -logKd/Ki=5.27, Kd=5.4uM
    10840 3tl5:A (2.788) BS01 980 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 GO:0016301 ... P48736 21981714 PDBbind: -logKd/Ki=7.85, IC50=14nM
    BindingDB: IC50=36nM, Kd=2.6nM
    10841 3tlh:A (2.0) BS01 3TL 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 10651036 MOAD: Ki=1.5nM
    PDBbind: -logKd/Ki=8.82, Ki=1.5nM
    10842 3tll:A (1.37) BS02 62D 2.4.2.29 GO:0002099 ... P28720 22736391 MOAD: Ki=40830nM
    PDBbind: -logKd/Ki=4.39, Ki=40.83uM
    10843 3tmk:A (2.0) BS01 T5A 2.7.4.9 GO:0004550 ... P00572 9521686 MOAD: Kd=135nM
    PDBbind: -logKd/Ki=6.87, Kd=135nM
    10844 3tmm:A (2.5001) BS01 dna ? N/A Q00059 22037171 PDBbind: Kd=6nM
    10845 3tmm:A (2.5001) BS02 dna ? N/A Q00059 22037171 PDBbind: Kd=6nM
    10846 3tn8:A (2.95) BS01 F18 2.7.11.22
    2.7.11.23    		 GO:0004672 ... P50750 22292676 PDBbind: -logKd/Ki=6.13, IC50=0.74uM
    BindingDB: IC50=3.5e+2nM
    10847 3tne:A (2.4) BS01 RIT 3.4.23.24 GO:0004190 ... P32951 22146051 PDBbind: -logKd/Ki=5.72, Ki=1.9uM
    10848 3tnh:A (3.202) BS01 F18 2.7.11.22
    2.7.11.23    		 GO:0004672 ... P50750 22292676 PDBbind: -logKd/Ki=6.46, IC50=0.35uM
    BindingDB: IC50=3.5e+2nM
    10849 3tpp:A (1.6) BS01 5HA 3.4.23.46 GO:0004190 ... P56817 22194329 MOAD: ic50=15nM
    PDBbind: -logKd/Ki=7.82, IC50=15nM
    BindingDB: IC50=15nM, EC50=43nM, Ki=233nM
    10850 3tpr:A (2.55) BS01 5HA 3.4.23.46 GO:0004190 ... P56817 22194329 PDBbind: -logKd/Ki=7.70, IC50=19.9nM
    BindingDB: IC50=15nM, EC50=43nM, Ki=233nM
    10851 3ts4:A (1.587) BS06 EEG 3.4.24.65 GO:0004222 ... P39900 22689580 MOAD: Ki=1.9nM
    PDBbind: -logKd/Ki=8.72, Ki=1.9nM
    BindingDB: Ki=1.92nM
    10852 3tsd:A (2.653) BS01 XMP 1.1.1.205 GO:0000166 ... A0A6L8P2U9 22788966 PDBbind: -logKd/Ki=3.66, Ki=218uM
    10853 3tsk:A (2.0) BS06 QEG 3.4.24.65 GO:0004222 ... P39900 22689580 PDBbind: -logKd/Ki=7.17, Kd=67nM
    BindingDB: Ki=317nM
    10854 3tt0:A (2.8) BS01 07J 2.7.10.1 GO:0004672 ... P11362 21936542 PDBbind: -logKd/Ki=9.05, IC50=0.9nM
    BindingDB: IC50=1.0nM
    10855 3tt4:A (1.88) BS05 E1S 3.4.24.34 GO:0004222 ... P22894 22689580 MOAD: Ki=5.3nM
    PDBbind: -logKd/Ki=8.28, Ki=5.3nM
    BindingDB: Ki=5.3nM
    10856 3tti:A (2.2) BS01 KBI 2.7.11.24 GO:0000165 ... P53779 22244937 MOAD: ic50=0.006uM
    PDBbind: -logKd/Ki=8.22, IC50=6nM
    BindingDB: IC50=6.0nM
    10857 3ttj:A (2.1) BS01 JBI 2.7.11.24 GO:0000165 ... P53779 22226655 MOAD: ic50=0.21uM
    PDBbind: -logKd/Ki=6.68, IC50=0.21uM
    BindingDB: IC50=210nM
    10858 3ttm:A (2.0) BS01 PUT ? GO:0015846 ... Q9I6J1 22300763 MOAD: Kd=3nM
    PDBbind: -logKd/Ki=8.52, Kd=3.0nM
    10859 3ttn:A (2.0) BS01 SPD ? GO:0005615 ... Q9I6J0 22300763 MOAD: Kd=14.3nM
    PDBbind: -logKd/Ki=7.84, Kd=14.3nM
    10860 3ttp:A (2.23) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 24785545 PDBbind: -logKd/Ki=9.12, Kd=750pM
    10861 3ttp:B (2.23) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 24785545 PDBbind: -logKd/Ki=9.12, Kd=750pM
    10862 3ttz:A (1.63) BS01 07N 5.6.2.2 GO:0003677 ... P0A0K8 22041057 MOAD: ic50=0.004uM
    PDBbind: -logKd/Ki=8.40, IC50=4nM
    BindingDB: IC50=4nM
    10863 3tu1:A (1.603) BS01 07G 2.3.2.27 GO:0005634 ... Q00987 21954050 MOAD: Ki=0.25uM
    PDBbind: -logKd/Ki=6.60, Ki=0.25uM
    10864 3tu7:H (2.49) BS02 0BM 3.4.21.5 GO:0004252 ... P00734 11738570 MOAD: Ki=8.17nM
    PDBbind: -logKd/Ki=8.09, Ki=8.17nM
    BindingDB: Ki=8.2nM, IC50=46nM
    10865 3tu9:A (2.09) BS01 5MM 4.1.2.13 GO:0004332 ... P00883 24900268 PDBbind: -logKd/Ki=5.12, IC50=7.5uM
    BindingDB: IC50=7500nM
    10866 3tv4:A (3.4) BS01 TV4 2.7.11.1 GO:0004672 ... P15056 24900315 PDBbind: -logKd/Ki=6.96, IC50=110nM
    BindingDB: IC50=1200nM
    10867 3tv5:A (2.8) BS01 RCP 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 21953464 PDBbind: -logKd/Ki=5.32, Kd=4.8uM
    10868 3tv5:B (2.8) BS01 RCP 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 21953464 PDBbind: -logKd/Ki=5.32, Kd=4.8uM
    10869 3tv5:B (2.8) BS02 RCP 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 21953464 PDBbind: -logKd/Ki=5.32, Kd=4.8uM
    10870 3tv6:A (3.3) BS01 B0R 2.7.11.1 GO:0004672 ... P15056 24900315 PDBbind: -logKd/Ki=8.32, IC50=4.8nM
    10871 3tv7:A (2.75) BS01 07Q 2.7.11.1 GO:0004672 ... Q13464 23275831 PDBbind: -logKd/Ki=7.52, IC50=30nM
    BindingDB: IC50=30nM
    10872 3tv8:A (2.639) BS01 DGJ 3.2.1.22 GO:0003824 ... P06280 22195554 PDBbind: -logKd/Ki=7.15, IC50=0.07uM
    BindingDB: IC50=70nM
    10873 3tv8:B (2.639) BS01 DGJ 3.2.1.22 GO:0003824 ... P06280 22195554 PDBbind: -logKd/Ki=7.15, IC50=0.07uM
    BindingDB: IC50=70nM
    10874 3tvc:A (2.43) BS06 E3P 3.4.24.- GO:0004222 ... P45452 22689580 MOAD: Ki=18nM
    PDBbind: -logKd/Ki=7.74, Ki=18nM
    BindingDB: Ki=18nM
    10875 3tvl:A (2.3) BS01 3PO 3.6.1.28 GO:0000287 ... Q9BU02 23707715 PDBbind: -logKd/Ki=4.00, Kd<0.1mM
    10876 3tvw:A (2.8) BS01 07H 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 21953464 PDBbind: -logKd/Ki=4.43, Kd=37.0uM
    10877 3tvw:B (2.8) BS01 07H 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 21953464 PDBbind: -logKd/Ki=4.43, Kd=37.0uM
    10878 3tvw:B (2.8) BS02 07H 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 21953464 PDBbind: -logKd/Ki=4.43, Kd=37.0uM
    10879 3tvx:A (2.84) BS03 PNX 3.1.4.53 GO:0004114 ... P27815 22223051 PDBbind: -logKd/Ki=4.14, Ki=72uM
    BindingDB: IC50=168000nM
    10880 3twd:A (1.9) BS01 GOB 2.3.1.157
    2.7.7.23    		 GO:0003977 ... P0ACC7 21984832 MOAD: ic50=0.018uM
    PDBbind: -logKd/Ki=7.74, IC50=0.018uM
    BindingDB: IC50=20nM
    10881 3twd:B (1.9) BS01 GOB 2.3.1.157
    2.7.7.23    		 GO:0003977 ... P0ACC7 21984832 MOAD: ic50=0.018uM
    PDBbind: -logKd/Ki=7.74, IC50=0.018uM
    BindingDB: IC50=20nM
    10882 3twj:A (2.9) BS01 07R 2.7.11.1 GO:0004672 ... Q13464 22846914 PDBbind: -logKd/Ki=7.84, IC50=14.5nM
    BindingDB: IC50=8nM
    10883 3txo:A (2.05) BS01 07U 2.7.11.13 GO:0004672 ... P24723 22078216 MOAD: ic50=9nM
    PDBbind: -logKd/Ki=8.05, IC50=9nM
    BindingDB: IC50=9.0nM
    10884 3ty0:A (2.0) BS01 082 ? GO:0003677 ... P37231 22070604 MOAD: ic50=83.1nM
    PDBbind: -logKd/Ki=7.08, IC50=83.1nM
    10885 3tyq:A (1.6) BS01 HI4 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... O92972 22247956 PDBbind: -logKd/Ki=8.30, IC50=5nM
    10886 3tyv:A (1.65) BS01 HI3 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... O92972 22148957 MOAD: ic50=0.008uM
    PDBbind: -logKd/Ki=8.10, IC50=0.008uM
    10887 3tz0:A (2.5) BS01 03H 2.7.11.1
    2.7.11.4    		 GO:0004672 ... Q00972 23716694 PDBbind: -logKd/Ki=5.04, Kd=9.2uM
    10888 3tz2:A (2.85) BS01 CLT 2.7.11.1
    2.7.11.4    		 GO:0004672 ... Q00972 23716694 PDBbind: -logKd/Ki=5.24, Kd=5.7uM
    10889 3tz4:A (2.25) BS02 03H 2.7.11.1
    2.7.11.4    		 GO:0004672 ... Q00972 23716694 PDBbind: -logKd/Ki=5.49, Kd=3.2uM
    10890 3tza:A (1.9) BS01 TZG ? GO:0015276 ... P19491 21923187 MOAD: Ki=3.15uM
    PDBbind: -logKd/Ki=5.50, Ki=3.15uM
    10891 3tzm:A (1.7) BS01 085 2.7.11.30 GO:0004672 ... P36897 21983015 PDBbind: -logKd/Ki=7.77, Ki=17nM
    BindingDB: IC50=94nM, Ki=17nM, EC50=172nM
    10892 3u0d:A (2.51) BS01 DBH ? GO:0036094 ... P80188 22928018 PDBbind: -logKd/Ki=10.00, Kd=0.101nM
    10893 3u0d:A (2.51) BS02 DBH ? GO:0036094 ... P80188 22928018 PDBbind: -logKd/Ki=10.00, Kd=0.101nM
    10894 3u0d:A (2.51) BS03 DBH ? GO:0036094 ... P80188 22928018 PDBbind: -logKd/Ki=10.00, Kd=0.101nM
    10895 3u0p:A (2.8) BS01 LSC ? N/A P15813 22395072 PDBbind: -logKd/Ki=5.68, Kd=2.1uM
    10896 3u10:A (2.3) BS01 CMP ? N/A Q9UL51 22006928 Manual survey: Kd=82.0nM (22006928)
    PDBbind: -logKd/Ki=5.44, Kd=3.6uM
    10897 3u15:A (1.8) BS01 03M ? GO:0005634 ... O15151 22745160 MOAD: Kd=0.078uM
    PDBbind: -logKd/Ki=7.11, Kd=0.078uM
    10898 3u15:A (1.8) BS02 03M ? GO:0005634 ... O15151 22745160 MOAD: Kd=0.078uM
    PDBbind: -logKd/Ki=7.11, Kd=0.078uM
    10899 3u15:B (1.8) BS01 03M ? GO:0005634 ... O15151 22745160 MOAD: Kd=0.078uM
    PDBbind: -logKd/Ki=7.11, Kd=0.078uM
    10900 3u15:B (1.8) BS02 03M ? GO:0005634 ... O15151 22745160 MOAD: Kd=0.078uM
    PDBbind: -logKd/Ki=7.11, Kd=0.078uM
    10901 3u18:A (1.9) BS01 Y0X 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 22782901 MOAD: ic50=0.81uM
    PDBbind: -logKd/Ki=6.09, IC50=0.81uM
    10902 3u1y:A (2.0) BS02 03I 3.5.1.108 GO:0006796 ... P47205 22175825 MOAD: ic50<2.13nM
    PDBbind: -logKd/Ki=8.67, IC50<2.13nM
    BindingDB: IC50=0.172nM
    10903 3u2k:A (1.64) BS01 087 5.6.2.2 GO:0003677 ... P0A0K8 22183167 PDBbind: -logKd/Ki=7.52, IC50=0.03uM
    BindingDB: IC50=30nM
    10904 3u3u:C (2.5) BS01 EAH ? GO:0005576 ... F8QQG5 22311975 MOAD: Kd=133.3nM
    PDBbind: -logKd/Ki=6.88, Kd=133.3nM
    10905 3u4h:A (1.878) BS01 C8R 2.4.99.20
    3.2.2.-
    3.2.2.6    		 GO:0061809 ... P28907 23840430 PDBbind: -logKd/Ki=4.25, IC50=56uM
    10906 3u4i:A (2.118) BS01 CVR 2.4.99.20
    3.2.2.-
    3.2.2.6    		 GO:0061809 ... P28907 23840430 PDBbind: -logKd/Ki=3.89, IC50=129uM
    10907 3u4m:A (2.0) BS01 rna ? GO:0000049 ... P27150 22868771 PDBbind: Kd=2.14pM
    10908 3u4o:A (1.77) BS01 08E 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... O92972 22104146 MOAD: ic50=0.053uM
    PDBbind: -logKd/Ki=7.28, IC50=53nM
    10909 3u4r:A (2.0) BS01 08F 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... O92972 22104146 MOAD: ic50=0.039uM
    PDBbind: -logKd/Ki=7.41, IC50=39nM
    10910 3u4u:A (2.2) BS01 LNH 2.7.11.1 GO:0004672 ... P68400 24900464 PDBbind: -logKd/Ki=8.52, IC50<3nM
    BindingDB: IC50=<3.0nM
    10911 3u5j:A (1.6) BS01 08H ? N/A O60885 22137933 MOAD: Kd=2.46uM
    PDBbind: -logKd/Ki=5.61, Kd=2.46uM
    BindingDB: Kd=2460nM
    10912 3u5l:A (1.39) BS01 08K ? N/A O60885 22137933 MOAD: Kd=0.64uM
    PDBbind: -logKd/Ki=6.19, Kd=0.64uM
    BindingDB: Kd=640nM
    10913 3u6a:A (2.199) BS01 18P 3.4.23.46 GO:0004190 ... P56817 22071305 PDBbind: -logKd/Ki=6.49, IC50=0.324uM
    BindingDB: IC50=36nM
    10914 3u6h:A (2.0) BS01 03X 2.7.10.1 GO:0004672 ... P08581 22320343 MOAD: Ki=1nM
    PDBbind: -logKd/Ki=9.00, Ki=1.0nM
    BindingDB: IC50=1.000000nM, Ki=1nM
    10915 3u6i:A (2.1) BS01 044 2.7.10.1 GO:0004672 ... P08581 22320343 PDBbind: -logKd/Ki=9.00, Ki=1nM
    BindingDB: IC50=1nM, Ki=1.9nM
    10916 3u6j:A (2.15) BS01 03X 2.7.10.1 GO:0004672 ... P35968 22320343 PDBbind: -logKd/Ki=8.21, IC50=6.2nM
    BindingDB: IC50=10nM
    10917 3u6w:A (2.21) BS02 KIV 2.3.3.13 GO:0003824 ... P9WQB3 22352945 MOAD: Kd=120nM
    PDBbind: -logKd/Ki=6.92, Kd=120nM
    10918 3u6w:B (2.21) BS02 KIV 2.3.3.13 GO:0003824 ... P9WQB3 22352945 MOAD: Kd=120nM
    PDBbind: -logKd/Ki=6.92, Kd=120nM
    10919 3u78:A (2.689) BS02 E67 1.14.11.65 N/A Q6ZMT4 22227394 PDBbind: -logKd/Ki=5.60, Ki=2.5uM
    10920 3u7f:B (1.8) BS01 dna 2.7.1.78
    3.1.3.32    		 GO:0006281 ... Q9JLV6 22171004 PDBbind: Kd=600nM
    10921 3u7k:A (1.9) BS01 MDB 3.5.1.88 GO:0006412 ... Q5HGZ3 22751663 PDBbind: -logKd/Ki=7.07, Ki=84.9nM
    10922 3u7l:A (2.01) BS02 UDB 3.5.1.88 GO:0006412 ... Q5HGZ3 22751663 PDBbind: -logKd/Ki=7.28, Ki=52.4nM
    10923 3u7m:A (2.15) BS02 FHF 3.5.1.88 GO:0006412 ... Q5HGZ3 22751663 PDBbind: -logKd/Ki=7.45, Ki=35.1nM
    10924 3u7n:A (2.3) BS02 UHF 3.5.1.88 GO:0006412 ... Q5HGZ3 22751663 PDBbind: -logKd/Ki=7.95, Ki=11.2nM
    10925 3u7s:A (2.05) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P35963 19535439 MOAD: Ki=3700pM
    PDBbind: -logKd/Ki=8.43, Ki=3.7nM
    10926 3u7s:A (2.05) BS02 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P35963 19535439 MOAD: Ki=3700pM
    PDBbind: -logKd/Ki=8.43, Ki=3.7nM
    10927 3u7s:B (2.05) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P35963 19535439 PDBbind: -logKd/Ki=8.43, Ki=3.7nM
    10928 3u7s:B (2.05) BS02 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P35963 19535439 PDBbind: -logKd/Ki=8.43, Ki=3.7nM
    10929 3u81:A (1.13) BS01 SAH 2.1.1.6 GO:0000287 ... P22734 22349227 MOAD: Ki=36uM
    PDBbind: -logKd/Ki=4.44, Ki=36uM
    10930 3u8d:A (1.805) BS01 U8D 3.1.1.4 GO:0004623 ... P14555 23482564 PDBbind: -logKd/Ki=6.33, IC50=0.47uM
    BindingDB: IC50=470nM
    10931 3u8h:A (2.3) BS01 BHP 3.1.1.4 GO:0004623 ... P14555 23482564 PDBbind: -logKd/Ki=6.49, IC50=0.32uM
    10932 3u8h:A (2.3) BS04 BHP 3.1.1.4 GO:0004623 ... P14555 23482564 PDBbind: -logKd/Ki=6.49, IC50=0.32uM
    10933 3u8j:B (2.35) BS01 09O ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=8.51, Ki=3.1nM
    BindingDB: Ki=3.1nM
    10934 3u8j:B (2.35) BS02 09O ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=8.51, Ki=3.1nM
    BindingDB: Ki=3.1nM
    10935 3u8j:C (2.35) BS01 09O ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=8.51, Ki=3.1nM
    BindingDB: Ki=3.1nM
    10936 3u8k:A (2.47) BS01 09P ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=8.66, Ki=2.2nM
    BindingDB: Ki=2.2nM
    10937 3u8k:A (2.47) BS02 09P ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=8.66, Ki=2.2nM
    BindingDB: Ki=2.2nM
    10938 3u8k:B (2.47) BS01 09P ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=8.66, Ki=2.2nM
    BindingDB: Ki=2.2nM
    10939 3u8k:B (2.47) BS02 09P ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=8.66, Ki=2.2nM
    BindingDB: Ki=2.2nM
    10940 3u8l:A (2.32) BS01 09Q ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=8.05, Ki=8.9nM
    BindingDB: Ki=8.9nM
    10941 3u8l:A (2.32) BS02 09Q ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=8.05, Ki=8.9nM
    BindingDB: Ki=8.9nM
    10942 3u8l:A (2.32) BS03 09Q ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=8.05, Ki=8.9nM
    BindingDB: Ki=8.9nM
    10943 3u8l:B (2.32) BS01 09Q ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=8.05, Ki=8.9nM
    BindingDB: Ki=8.9nM
    10944 3u8l:B (2.32) BS02 09Q ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=8.05, Ki=8.9nM
    BindingDB: Ki=8.9nM
    10945 3u8l:B (2.32) BS03 09Q ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=8.05, Ki=8.9nM
    BindingDB: Ki=8.9nM
    10946 3u8l:B (2.32) BS04 09Q ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=8.05, Ki=8.9nM
    BindingDB: Ki=8.9nM
    10947 3u8m:A (2.7) BS01 09R ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=8.89, Ki=1.3nM
    BindingDB: Ki=1.3nM
    10948 3u8m:A (2.7) BS02 09R ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=8.89, Ki=1.3nM
    BindingDB: Ki=1.3nM
    10949 3u8m:B (2.7) BS01 09R ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=8.89, Ki=1.3nM
    BindingDB: Ki=1.3nM
    10950 3u8m:B (2.7) BS02 09R ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=8.89, Ki=1.3nM
    BindingDB: Ki=1.3nM
    10951 3u8n:A (2.35) BS01 09S ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=10.17, Ki=0.067nM
    BindingDB: Ki=0.067nM
    10952 3u8n:A (2.35) BS02 09S ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=10.17, Ki=0.067nM
    BindingDB: Ki=0.067nM
    10953 3u8n:B (2.35) BS01 09S ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=10.17, Ki=0.067nM
    BindingDB: Ki=0.067nM
    10954 3u8n:B (2.35) BS02 09S ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=10.17, Ki=0.067nM
    BindingDB: Ki=0.067nM
    10955 3u8w:A (2.15) BS01 09J 2.7.11.24 GO:0000077 ... Q16539 22196117 MOAD: ic50=1nM
    PDBbind: -logKd/Ki=9.00, IC50=1.0nM
    BindingDB: IC50=1nM
    10956 3u90:A (1.9) BS01 SDS ? GO:0005506 ... P02791 22525747 PDBbind: -logKd/Ki=4.62, Kd=24uM
    10957 3u92:A (1.9) BS01 KAI ? GO:0015276 ... P42264 23141068 PDBbind: -logKd/Ki=7.48, Ki=32.8nM
    BindingDB: Ki=32.8nM
    10958 3u93:A (1.881) BS01 GLU ? GO:0015276 ... P42264 23141068 PDBbind: -logKd/Ki=6.31, Ki=494nM
    10959 3u9c:A (3.2) BS01 04G 2.7.11.1 GO:0004672 ... P68400 22868753 PDBbind: -logKd/Ki=5.89, Ki=1.3uM
    10960 3u9n:A (1.85) BS01 09H 2.7.11.1 GO:0000077 ... O14757 N/A PDBbind: -logKd/Ki=7.00, Kd<100nM
    BindingDB: EC50=10000nM, IC50=75nM
    10961 3u9q:A (1.522) BS02 DKA ? GO:0003677 ... P37231 22039047 MOAD: Ki=41.7uM
    PDBbind: -logKd/Ki=4.38, Ki=41.7uM
    10962 3ua8:A (1.9) BS01 08W ? GO:0015276 ... P42262 22197388 MOAD: ic50=14nM
    PDBbind: -logKd/Ki=7.85, IC50=14nM
    10963 3ua9:A (2.15) BS02 IWR 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 22233320 PDBbind: -logKd/Ki=7.25, IC50=56nM
    BindingDB: IC50=135nM
    10964 3ubd:A (1.53) BS01 SL0 2.7.11.1 GO:0004672 ... P18654 22846040 MOAD: Kd=2.9uM
    PDBbind: -logKd/Ki=5.54, Kd=2.9uM
    10965 3ubx:A (3.1) BS01 09N ? N/A P11609 22110136 PDBbind: -logKd/Ki=7.60, Kd=25.2nM
    10966 3ubx:L (3.1) BS01 09N N/A N/A N/A 22110136 PDBbind: -logKd/Ki=7.60, Kd=25.2nM
    10967 3uby:A (2.0) BS01 dna 3.2.2.21 GO:0003677 ... P29372 22148158 PDBbind: Kd=21nM
    10968 3uby:A (2.0) BS02 dna 3.2.2.21 GO:0003677 ... P29372 22148158 PDBbind: Kd=21nM
    10969 3ucj:A (1.85) BS02 AZM 4.2.1.1 GO:0004089 ... Q96554 22162771 MOAD: Ki=1uM
    PDBbind: -logKd/Ki=6.00, Ki=1uM
    10970 3ucj:A (1.85) BS03 AZM 4.2.1.1 GO:0004089 ... Q96554 22162771 MOAD: Ki=1uM
    PDBbind: -logKd/Ki=6.00, Ki=1uM
    10971 3ucj:B (1.85) BS01 AZM 4.2.1.1 GO:0004089 ... Q96554 22162771 MOAD: Ki=1uM
    PDBbind: -logKd/Ki=6.00, Ki=1uM
    10972 3ucj:B (1.85) BS03 AZM 4.2.1.1 GO:0004089 ... Q96554 22162771 MOAD: Ki=1uM
    PDBbind: -logKd/Ki=6.00, Ki=1uM
    10973 3ud5:A (2.0) BS01 J1A 2.7.6.3 GO:0000287 ... P26281 22169600 PDBbind: -logKd/Ki=3.82, Kd>150uM
    BindingDB: Kd=>150000nM, IC50=>100000nM
    10974 3ud7:B (2.8) BS01 IDY ? GO:0001525 ... P05230 23240683 PDBbind: -logKd/Ki=4.74, Kd=18.1uM
    10975 3ud7:B (2.8) BS02 GNS ? GO:0001525 ... P05230 23240683 PDBbind: -logKd/Ki=4.74, Kd=18.1uM
    10976 3ud8:A (2.37) BS01 IDY ? GO:0001525 ... P05230 23240683 PDBbind: -logKd/Ki=5.38, Kd=4.13uM
    10977 3ud8:A (2.37) BS02 GNX ? GO:0001525 ... P05230 23240683 PDBbind: -logKd/Ki=5.38, Kd=4.13uM
    10978 3ud9:B (2.34) BS01 IDY ? GO:0001525 ... P05230 23240683 PDBbind: -logKd/Ki=4.67, Kd=21.2uM
    10979 3ud9:B (2.34) BS02 SGN ? GO:0001525 ... P05230 23240683 PDBbind: -logKd/Ki=4.67, Kd=21.2uM
    10980 3uda:B (2.51) BS01 IDY ? GO:0001525 ... P05230 23240683 PDBbind: -logKd/Ki=5.01, Kd=9.71uM
    10981 3uda:B (2.51) BS02 SUS ? GO:0001525 ... P05230 23240683 PDBbind: -logKd/Ki=5.01, Kd=9.71uM
    10982 3udd:A (1.95) BS02 34M 2.4.2.-
    2.4.2.30    		 GO:0003950 ... O95271 22260203 PDBbind: -logKd/Ki=7.10, Kd=79nM
    BindingDB: Kd=79nM
    10983 3udh:A (1.7) BS01 091 3.4.23.46 GO:0004190 ... P56817 22468999 MOAD: Kd=1.4mM
    PDBbind: -logKd/Ki=2.85, Kd=1.4mM
    10984 3udj:A (1.8) BS01 092 3.4.23.46 GO:0004190 ... P56817 22468999 MOAD: ic50=242uM
    PDBbind: -logKd/Ki=3.62, IC50=242uM
    10985 3udk:A (2.51) BS01 095 3.4.23.46 GO:0004190 ... P56817 22468999 PDBbind: -logKd/Ki=4.49, IC50=32uM
    10986 3udm:A (1.94) BS01 09A 3.4.23.46 GO:0004190 ... P56817 22468999 MOAD: ic50=33uM
    PDBbind: -logKd/Ki=4.48, IC50=33uM
    10987 3udn:A (2.193) BS01 09B 3.4.23.46 GO:0004190 ... P56817 22468999 MOAD: ic50=7uM
    PDBbind: -logKd/Ki=5.15, IC50=7.0uM
    10988 3udp:A (1.95) BS01 09D 3.4.23.46 GO:0004190 ... P56817 22468999 MOAD: ic50=6uM
    PDBbind: -logKd/Ki=5.22, IC50=6.0uM
    10989 3udq:A (2.73) BS01 09E 3.4.23.46 GO:0004190 ... P56817 22468999 PDBbind: -logKd/Ki=6.00, IC50=1.0uM
    10990 3udr:A (1.95) BS01 09F 3.4.23.46 GO:0004190 ... P56817 22468999 MOAD: ic50=11uM
    PDBbind: -logKd/Ki=4.96, IC50=11uM
    10991 3udv:A (1.88) BS01 J1C 2.7.6.3 GO:0000287 ... P26281 22169600 MOAD: Kd=2.55uM
    PDBbind: -logKd/Ki=5.59, Kd=2.55uM
    BindingDB: Kd=2550nM, IC50=3160nM
    10992 3udy:A (2.0) BS01 09G 3.4.23.46 GO:0004190 ... P56817 22468999 MOAD: ic50=2uM
    PDBbind: -logKd/Ki=5.70, IC50=2.0uM
    10993 3ue4:A (2.424) BS01 DB8 2.7.10.2 GO:0004672 ... P00519 22493660 PDBbind: -logKd/Ki=8.96, IC50=1.1nM
    BindingDB: IC50=1.1nM, Kd=0.057000nM
    10994 3uew:A (2.0) BS01 PLM ? GO:0005515 ... P02754 22425630 MOAD: Ka=2043000M^-1
    PDBbind: -logKd/Ki=6.31, Kd=0.49uM
    10995 3uf9:A (2.68) BS03 FST 3.1.8.1 GO:0004063 ... Q97VT7 23139857 PDBbind: -logKd/Ki=2.11, Ki=7.78mM
    10996 3uf9:C (2.68) BS03 FST 3.1.8.1 GO:0004063 ... Q97VT7 23139857 PDBbind: -logKd/Ki=2.11, Ki=7.78mM
    10997 3ufa:A (1.8) BS01 VPF 3.4.21.- GO:0004252 ... Q2FXC2 24375505 PDBbind: -logKd/Ki=5.00, Ki=10uM
    10998 3ufd:A (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 22941636 PDBbind: Kd=0.61nM
    10999 3ufd:A (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 22941636 PDBbind: Kd=0.61nM
    11000 3ufd:B (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 22941636 PDBbind: Kd=0.61nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218