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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 24809 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    10001 3pn4:A (1.9) BS01 BB2 3.5.1.88 GO:0042586 ... Q9FUZ2 21629676 MOAD: Ki=140nM
    PDBbind: -logKd/Ki=6.85, Ki=140nM
    10002 3po1:B (1.65) BS03 MKY 3.4.21.5 GO:0004252 ... P00734 22726924 PDBbind: -logKd/Ki=4.02, Kd=95uM
    10003 3po1:C (1.65) BS02 MKY 3.4.21.5 GO:0004252 ... P00734 22726924 MOAD: Kd=95uM
    PDBbind: -logKd/Ki=4.02, Kd=95uM
    10004 3po6:A (1.47) BS02 DT9 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 21395315 PDBbind: -logKd/Ki=7.06, Ki=87.3nM
    10005 3pov:A (2.5) BS01 dna ? GO:0003677 ... P88925 21421561 PDBbind: Kd=6uM
    10006 3pov:A (2.5) BS02 dna ? GO:0003677 ... P88925 21421561 PDBbind: Kd=6uM
    10007 3poz:A (1.5) BS01 03P 2.7.10.1 GO:0004672 ... P00533 21454582 MOAD: ic50=23nM
    PDBbind: -logKd/Ki=7.64, IC50=23nM
    BindingDB: IC50=4.0nM
    10008 3pp0:A (2.25) BS01 03Q 2.7.10.1 GO:0004672 ... P04626 21454582 MOAD: ic50=11nM
    PDBbind: -logKd/Ki=7.96, IC50=11nM
    BindingDB: IC50=11nM
    10009 3pp1:A (2.7) BS03 IZG 2.7.12.2 GO:0004672 ... Q02750 21310613 PDBbind: -logKd/Ki=8.49, IC50=3.2nM
    BindingDB: IC50=1.8nM
    10010 3pp7:B (2.35) BS01 SVR 2.7.1.40 GO:0000287 ... Q27686 21733839 PDBbind: -logKd/Ki=3.94, Ki=115.6uM
    10011 3ppj:A (3.7) BS01 FOI 2.7.11.1 GO:0004672 ... P15056 21251822 PDBbind: -logKd/Ki=8.70, IC50<2nM
    10012 3ppk:A (3.0) BS01 FNI 2.7.11.1 GO:0004672 ... P15056 21251822 PDBbind: -logKd/Ki=8.85, IC50=1.4nM
    10013 3ppm:A (1.78) BS01 JG1 3.1.1.-
    3.5.1.99    		 GO:0000139 ... P97612 21355555 MOAD: Ki=0.29nM
    PDBbind: -logKd/Ki=9.54, Ki=0.29nM
    BindingDB: Ki=0.29nM
    10014 3ppo:A (2.7) BS01 DCK ? GO:0022857 ... O32243 21366542 PDBbind: -logKd/Ki=5.30, Kd=5uM
    10015 3ppq:A (1.91) BS01 CHT ? GO:0022857 ... O32243 21366542 MOAD: Kd=28uM
    PDBbind: -logKd/Ki=4.55, Kd=28uM
    10016 3ppr:A (2.1) BS01 4CS ? GO:0022857 ... O32243 21366542 MOAD: Kd=1.5mM
    PDBbind: -logKd/Ki=2.82, Kd=1.5mM
    10017 3pr0:A (2.2) BS01 JG2 3.1.1.-
    3.5.1.99    		 GO:0000139 ... P97612 21355555 PDBbind: -logKd/Ki=9.54, Ki=0.29nM
    10018 3prf:A (2.9) BS01 FP3 2.7.11.1 GO:0004672 ... P15056 21251822 PDBbind: -logKd/Ki=8.85, IC50=1.4nM
    10019 3prs:A (1.38) BS01 RIT 3.4.23.22 GO:0004190 ... P11838 22213702 PDBbind: -logKd/Ki=7.82, Ki=15nM
    10020 3prz:A (2.6) BS01 3RZ 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 GO:0016301 ... P48736 21269826 PDBbind: -logKd/Ki=7.59, Ki=26nM
    10021 3ps1:A (1.85) BS02 ZH2 N/A GO:0008759 ... N/A 21194954 PDBbind: -logKd/Ki=10.17, Ki=67pM
    10022 3ps6:A (2.6) BS01 3PS 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 GO:0016301 ... P48736 21269826 PDBbind: -logKd/Ki=7.74, Ki=18nM
    10023 3psb:A (3.4) BS01 SM6 2.7.11.1 GO:0004672 ... P15056 21211972 PDBbind: -logKd/Ki=8.52, IC50=3nM
    10024 3psd:A (3.6) BS01 SM7 2.7.11.1 GO:0004672 ... P15056 21536432 PDBbind: -logKd/Ki=8.52, IC50=3nM
    10025 3ptg:A (2.43) BS02 932 2.7.11.24 GO:0004672 ... P53779 21316234 MOAD: ic50=25nM
    PDBbind: -logKd/Ki=7.60, IC50=25nM
    BindingDB: IC50=<100nM
    10026 3pty:A (2.0) BS01 AFO 2.4.2.- N/A P9WNL5 21383969 PDBbind: -logKd/Ki=5.44, Kd=3.65uM
    10027 3pup:A (2.99) BS01 OS1 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 21446733 PDBbind: -logKd/Ki=8.22, IC50=6nM
    10028 3pvp:A (2.3) BS01 dna ? GO:0003677 ... A5TY69 21620858 PDBbind: Kd=60nM
    10029 3pvp:A (2.3) BS02 dna ? GO:0003677 ... A5TY69 21620858 PDBbind: Kd=60nM
    10030 3pvp:B (2.3) BS01 dna ? GO:0003677 ... A5TY69 21620858 PDBbind: Kd=60nM
    10031 3pvp:B (2.3) BS02 dna ? GO:0003677 ... A5TY69 21620858 PDBbind: Kd=60nM
    10032 3pvu:A (2.48) BS01 QRW 2.7.11.15 GO:0001664 ... P21146 21596927 MOAD: ic50=290nM
    PDBbind: -logKd/Ki=6.54, IC50=290nM
    BindingDB: IC50=30nM
    10033 3pvv:A (2.0) BS01 dna ? GO:0003677 ... A5TY69 21620858 PDBbind: Kd=36nM
    10034 3pvv:A (2.0) BS02 dna ? GO:0003677 ... A5TY69 21620858 PDBbind: Kd=36nM
    10035 3pvv:B (2.0) BS01 dna ? GO:0003677 ... A5TY69 21620858 PDBbind: Kd=36nM
    10036 3pvv:B (2.0) BS02 dna ? GO:0003677 ... A5TY69 21620858 PDBbind: Kd=36nM
    10037 3pvw:A (2.49) BS01 QRX 2.7.11.15 GO:0001664 ... P21146 21596927 MOAD: ic50=54nM
    PDBbind: -logKd/Ki=7.27, IC50=54nM
    BindingDB: IC50=20nM
    10038 3pwd:A (2.2) BS01 CZ0 2.7.11.1 GO:0004672 ... P28523 21720886 MOAD: Ki=0.22uM
    PDBbind: -logKd/Ki=6.66, Ki=0.22uM
    10039 3pwh:A (3.296) BS01 ZMA ? GO:0001609 ... P29274 21885291 PDBbind: -logKd/Ki=8.72, Kd=1.9nM
    BindingDB: Ki=1.9nM, Kd=0.22nM, IC50=42nM
    10040 3pwk:A (1.5) BS02 L14 N/A GO:0004073 ... N/A 22039970 MOAD: Ki=0.45mM
    PDBbind: -logKd/Ki=3.35, Ki=0.45mM
    10041 3pwm:A (1.46) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 21446746 PDBbind: -logKd/Ki=9.10, Kd=0.8nM
    10042 3pwm:B (1.46) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 21446746 PDBbind: -logKd/Ki=9.10, Kd=0.8nM
    10043 3pww:A (1.22) BS01 ROC 3.4.23.22 GO:0004190 ... P11838 22213702 PDBbind: -logKd/Ki=7.32, Ki=48nM
    10044 3px8:X (1.29) BS01 JP2 3.2.2.22 GO:0017148 ... P02879 21641093 MOAD: ic50=230uM
    PDBbind: -logKd/Ki=3.64, IC50=230uM
    10045 3px9:X (1.89) BS01 JP3 3.2.2.22 GO:0017148 ... P02879 21641093 MOAD: ic50=380uM
    PDBbind: -logKd/Ki=3.42, IC50=380uM
    BindingDB: IC50=380000nM
    10046 3pxf:A (1.8) BS01 2AN 2.7.11.22 GO:0000082 ... P24941 21291269 MOAD: Kd=37uM
    PDBbind: -logKd/Ki=4.43, Kd=37uM
    BindingDB: Kd=37000nM, IC50=91000nM
    10047 3pxf:A (1.8) BS02 2AN 2.7.11.22 GO:0000082 ... P24941 21291269 MOAD: Kd=37uM
    PDBbind: -logKd/Ki=4.43, Kd=37uM
    BindingDB: Kd=37000nM, IC50=91000nM
    10048 3pxq:A (1.9) BS01 2AN 2.7.11.22 GO:0000082 ... P24941 21291269 MOAD: Kd=37uM
    PDBbind: -logKd/Ki=4.43, Kd=37uM
    BindingDB: Kd=37000nM, IC50=91000nM
    10049 3pxq:A (1.9) BS02 2AN 2.7.11.22 GO:0000082 ... P24941 21291269 MOAD: Kd=37uM
    PDBbind: -logKd/Ki=4.43, Kd=37uM
    BindingDB: Kd=37000nM, IC50=91000nM
    10050 3pxq:A (1.9) BS03 2AN 2.7.11.22 GO:0000082 ... P24941 21291269 MOAD: Kd=37uM
    PDBbind: -logKd/Ki=4.43, Kd=37uM
    BindingDB: Kd=37000nM, IC50=91000nM
    10051 3pxy:A (1.8) BS01 JWS 2.7.11.22 GO:0000082 ... P24941 21291269 MOAD: ic50=5.9uM
    PDBbind: -logKd/Ki=5.23, IC50=5.9uM
    10052 3pxz:A (1.7) BS03 JWS 2.7.11.22 GO:0000082 ... P24941 21291269 MOAD: ic50=5.9uM
    PDBbind: -logKd/Ki=5.23, IC50=5.9uM
    10053 3py0:A (1.75) BS01 SU9 2.7.11.22 GO:0000082 ... P24941 21291269 MOAD: ic50=0.13uM
    PDBbind: -logKd/Ki=6.89, IC50=130nM
    BindingDB: IC50=22nM
    10054 3py1:A (2.05) BS01 SU9 2.7.11.22 GO:0000082 ... P24941 21291269 MOAD: ic50=0.13uM
    PDBbind: -logKd/Ki=6.89, IC50=130nM
    BindingDB: IC50=22nM
    10055 3pyy:A (1.85) BS02 3YY 2.7.10.2 GO:0004672 ... P00519 21338916 PDBbind: -logKd/Ki=6.86, Kd=137nM
    BindingDB: IC50=398nM, EC50=794nM
    10056 3pz1:B (1.95) BS01 3PZ 2.5.1.60 GO:0003824 ... Q08603 21520375 MOAD: ic50=724nM
    PDBbind: -logKd/Ki=6.14, IC50=724nM
    10057 3pz2:B (2.35) BS03 3PZ 2.5.1.60 GO:0003824 ... Q08603 21520375 MOAD: ic50=724nM
    PDBbind: -logKd/Ki=6.14, IC50=724nM
    10058 3pz3:B (2.0) BS03 PZ3 2.5.1.60 GO:0003824 ... Q08603 21520375 MOAD: ic50=141nM
    PDBbind: -logKd/Ki=6.85, IC50=141nM
    10059 3pz4:B (2.1) BS03 3PZ 2.5.1.58 GO:0003824 ... Q02293 21520375 MOAD: ic50=6nM
    PDBbind: -logKd/Ki=8.22, IC50=6nM
    10060 3q05:A (2.4) BS01 dna ? GO:0000976 ... P04637 21522129 PDBbind: Kd=7.7nM
    10061 3q05:A (2.4) BS02 dna ? GO:0000976 ... P04637 21522129 PDBbind: Kd=7.7nM
    10062 3q05:B (2.4) BS01 dna ? GO:0000976 ... P04637 21522129 PDBbind: Kd=7.7nM
    10063 3q05:B (2.4) BS02 dna ? GO:0000976 ... P04637 21522129 PDBbind: Kd=7.7nM
    10064 3q05:C (2.4) BS01 dna ? GO:0000976 ... P04637 21522129 PDBbind: Kd=7.7nM
    10065 3q05:C (2.4) BS02 dna ? GO:0000976 ... P04637 21522129 PDBbind: Kd=7.7nM
    10066 3q05:D (2.4) BS01 dna ? GO:0000976 ... P04637 21522129 PDBbind: Kd=7.7nM
    10067 3q0b:X (2.2) BS01 dna 2.1.1.-
    2.1.1.367    		 N/A O82175 21245167 PDBbind: Kd=1.08uM
    10068 3q0d:A (2.3704) BS01 dna 2.1.1.-
    2.1.1.367    		 N/A O82175 21245167 PDBbind: Kd=5uM
    10069 3q0d:A (2.3704) BS02 dna 2.1.1.-
    2.1.1.367    		 N/A O82175 21245167 PDBbind: Kd=5uM
    10070 3q0d:X (2.3704) BS01 dna 2.1.1.-
    2.1.1.367    		 N/A O82175 21245167 PDBbind: Kd=5uM
    10071 3q0d:X (2.3704) BS02 dna 2.1.1.-
    2.1.1.367    		 N/A O82175 21245167 PDBbind: Kd=5uM
    10072 3q0f:A (2.75) BS01 dna 2.1.1.-
    2.1.1.367    		 N/A O82175 21245167 PDBbind: Kd=8.7uM
    10073 3q0f:X (2.75) BS01 dna 2.1.1.-
    2.1.1.367    		 N/A O82175 21245167 PDBbind: Kd=8.7uM
    10074 3q0l:A (2.503) BS01 rna ? GO:0003723 ... Q14671 21397187 PDBbind: Kd=0.91nM
    10075 3q0l:B (2.503) BS01 rna ? GO:0003723 ... Q14671 21397187 PDBbind: Kd=0.91nM
    10076 3q0m:A (2.705) BS01 rna ? GO:0003723 ... Q14671 21397187 PDBbind: Kd=0.63nM
    10077 3q0m:B (2.705) BS01 rna ? GO:0003723 ... Q14671 21397187 PDBbind: Kd=0.63nM
    10078 3q0n:A (2.4) BS01 rna ? GO:0003723 ... Q14671 21397187 PDBbind: Kd=19.02nM
    10079 3q0n:B (2.4) BS01 rna ? GO:0003723 ... Q14671 21397187 PDBbind: Kd=19.02nM
    10080 3q0p:A (2.6) BS01 rna ? GO:0003723 ... Q14671 21397187 PDBbind: Kd=0.4nM
    10081 3q0p:B (2.6) BS01 rna ? GO:0003723 ... Q14671 21397187 PDBbind: Kd=0.4nM
    10082 3q0q:A (2.0) BS01 rna ? GO:0003723 ... Q8TB72 21397187 PDBbind: Kd=0.17nM
    10083 3q0r:A (2.0) BS01 rna ? GO:0003723 ... Q8TB72 21397187 PDBbind: Kd=0.08nM
    10084 3q0s:A (2.0) BS01 rna ? GO:0003723 ... Q8TB72 21397187 PDBbind: Kd=11.07nM
    10085 3q0z:A (2.29) BS01 23E 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... Q9WMX2 21486696 PDBbind: -logKd/Ki=7.70, IC50=20nM
    10086 3q1x:A (1.59) BS01 SER 2.3.1.30 GO:0005829 ... Q9U8X2 21297164 PDBbind: -logKd/Ki=5.33, Ki=4.7uM
    10087 3q2a:A (1.99) BS03 PAB 1.14.13.236 GO:0004497 ... Q00456 22264099 PDBbind: -logKd/Ki=5.30, Ki~5uM
    10088 3q2a:A (1.99) BS04 PAB 1.14.13.236 GO:0004497 ... Q00456 22264099 PDBbind: -logKd/Ki=5.30, Ki~5uM
    10089 3q2a:A (1.99) BS05 PAB 1.14.13.236 GO:0004497 ... Q00456 22264099 PDBbind: -logKd/Ki=5.30, Ki~5uM
    10090 3q2a:A (1.99) BS06 PAB 1.14.13.236 GO:0004497 ... Q00456 22264099 PDBbind: -logKd/Ki=5.30, Ki~5uM
    10091 3q2g:A (2.3) BS01 QGF 3.4.24.- GO:0004222 ... Q9UHI8 21300546 MOAD: ic50=3.5nM
    PDBbind: -logKd/Ki=8.46, IC50=3.5nM
    10092 3q2h:A (2.33) BS03 QHF 3.4.24.- GO:0004222 ... Q9UHI8 21300546 MOAD: ic50=0.69nM
    PDBbind: -logKd/Ki=9.16, IC50=690pM
    10093 3q2j:A (2.1501) BS02 CKI 2.7.1.95 GO:0005524 ... P0A3Y5 21573013 PDBbind: -logKd/Ki=4.18, Ki=66.1uM
    10094 3q2m:A (2.9) BS01 CKI ? GO:0000166 ... O06916 21573013 PDBbind: -logKd/Ki=3.80, Ki=159uM
    10095 3q32:A (2.5) BS01 J2I 2.7.10.2 GO:0004672 ... O60674 21282055 MOAD: ic50=0.0018uM
    PDBbind: -logKd/Ki=8.74, IC50=1.8nM
    BindingDB: IC50=1.8nM
    10096 3q3b:A (2.7) BS01 55E 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 21295469 PDBbind: -logKd/Ki=7.76, IC50=17.2nM
    10097 3q3k:A (2.0) BS03 D90 3.4.21.6 GO:0004252 ... P00742 21345673 MOAD: ic50=7.4nM
    PDBbind: -logKd/Ki=8.13, IC50=7.4nM
    BindingDB: IC50=7.4nM
    10098 3q3t:A (2.6) BS01 RX0 3.4.23.15 GO:0004190 ... P00797 21741239 PDBbind: -logKd/Ki=7.43, IC50=37nM
    BindingDB: IC50=37nM
    10099 3q43:A (1.8) BS02 D66 3.4.11.- GO:0006508 ... O96935 21366301 MOAD: Ki=43nM
    PDBbind: -logKd/Ki=7.37, Ki=43nM
    BindingDB: Ki=43nM
    10100 3q44:A (1.8) BS02 D50 3.4.11.- GO:0006508 ... O96935 21366301 MOAD: Ki=490nM
    PDBbind: -logKd/Ki=6.31, Ki=490nM
    BindingDB: Ki=490nM
    10101 3q4b:A (2.19) BS01 RX5 3.4.23.15 GO:0004190 ... P00797 24900262 PDBbind: -logKd/Ki=9.33, IC50=0.47nM
    BindingDB: IC50=0.47nM
    10102 3q4c:A (3.2) BS01 RSW 2.7.11.1 GO:0004672 ... P15056 19371126 PDBbind: -logKd/Ki=6.43, IC50=370nM
    10103 3q5h:A (2.16) BS01 RX6 3.4.23.15 GO:0004190 ... P00797 24900262 PDBbind: -logKd/Ki=6.25, IC50=0.56uM
    BindingDB: IC50=0.48nM
    10104 3q6k:A (2.52) BS01 SRO ? GO:0005576 ... Q5WPU9 21795673 Manual survey: Kd=4.3nM (21795673)
    PDBbind: -logKd/Ki=8.37, Kd=4.3nM
    10105 3q6w:A (1.75) BS01 Q6W 2.7.10.1 GO:0004672 ... P08581 21247903 MOAD: Kd=27nM
    PDBbind: -logKd/Ki=7.57, Kd=27nM
    BindingDB: IC50=85nM
    10106 3q6z:A (2.23) BS01 APR 2.4.2.- N/A Q460N5 23473667 PDBbind: -logKd/Ki=3.72, Kd=192uM
    10107 3q71:A (2.2) BS01 AR6 2.4.2.- N/A Q460N5 23473667 PDBbind: -logKd/Ki=5.22, Kd=6.0uM
    10108 3q72:A (1.655) BS01 GNP ? GO:0003924 ... P55042 21903096 PDBbind: -logKd/Ki=5.80, Kd=1574nM
    10109 3q77:A (1.998) BS02 2HY 3.4.21.37 GO:0000122 ... P08246 21549129 MOAD: ic50=6nM
    PDBbind: -logKd/Ki=8.22, IC50=6nM
    10110 3q7j:A (2.91) BS02 FBO 3.4.11.- GO:0004177 ... O93655 21493078 PDBbind: -logKd/Ki=4.52, IC50=30uM
    10111 3q7p:A (2.5) BS01 GNP ? GO:0003924 ... P55042 21903096 PDBbind: -logKd/Ki=5.80, Kd=1574nM
    10112 3q7q:A (2.3) BS01 GNP ? GO:0003924 ... P55042 21903096 PDBbind: -logKd/Ki=5.65, Kd=2256nM
    10113 3q8h:A (1.75) BS02 AO9 4.6.1.12 GO:0008299 ... Q63T71 24157367 PDBbind: -logKd/Ki=4.15, Kd=70uM
    10114 3q8h:A (1.75) BS03 AO9 4.6.1.12 GO:0008299 ... Q63T71 24157367 PDBbind: -logKd/Ki=4.15, Kd=70uM
    10115 3q8h:B (1.75) BS01 AO9 4.6.1.12 GO:0008299 ... Q63T71 24157367 PDBbind: -logKd/Ki=4.15, Kd=70uM
    10116 3q8h:B (1.75) BS03 AO9 4.6.1.12 GO:0008299 ... Q63T71 24157367 PDBbind: -logKd/Ki=4.15, Kd=70uM
    10117 3q92:A (2.8) BS01 XNB 2.7.1.3 GO:0004454 ... P50053 24900346 PDBbind: -logKd/Ki=7.92, IC50=12nM
    BindingDB: IC50=<500nM
    10118 3q92:B (2.8) BS01 XNB 2.7.1.3 GO:0004454 ... P50053 24900346 PDBbind: -logKd/Ki=7.92, IC50=12nM
    BindingDB: IC50=<500nM
    10119 3q96:A (3.1) BS01 0NF 2.7.11.1 GO:0004672 ... P15056 21341678 PDBbind: -logKd/Ki=8.54, IC50=2.9nM
    10120 3qa2:A (2.519) BS01 XNA 2.7.1.3 GO:0004454 ... P50053 24900346 PDBbind: -logKd/Ki=6.68, IC50=210nM
    BindingDB: IC50=2400nM
    10121 3qa2:B (2.519) BS01 XNA 2.7.1.3 GO:0004454 ... P50053 24900346 PDBbind: -logKd/Ki=6.68, IC50=210nM
    BindingDB: IC50=2400nM
    10122 3qaa:A (1.4) BS01 G04 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 22509432 PDBbind: -logKd/Ki=11.54, Ki=2.9pM
    10123 3qaa:B (1.4) BS01 G04 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 22509432 PDBbind: -logKd/Ki=11.54, Ki=2.9pM
    10124 3qai:A (2.7) BS01 XNN 2.7.1.3 GO:0004454 ... P50053 24900346 PDBbind: -logKd/Ki=8.10, IC50=8.0nM
    BindingDB: IC50=8nM
    10125 3qai:B (2.7) BS01 XNN 2.7.1.3 GO:0004454 ... P50053 24900346 PDBbind: -logKd/Ki=8.10, IC50=8.0nM
    BindingDB: IC50=8nM
    10126 3qak:A (2.71) BS01 UKA 3.2.1.17 GO:0003796 ... P00720
    P29274    		 21393508 PDBbind: -logKd/Ki=8.32, Ki=4.75nM
    10127 3qaq:A (2.9) BS01 QAQ 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 GO:0016301 ... P48736 21376583 PDBbind: -logKd/Ki=7.00, IC50=0.10uM
    BindingDB: IC50=100nM, Ki=120nM
    10128 3qar:A (2.65) BS01 QAR 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 GO:0016301 ... P48736 21376583 PDBbind: -logKd/Ki=6.49, IC50=0.32uM
    10129 3qbc:A (1.65) BS01 B55 2.7.6.3 GO:0003848 ... A0A0H3JXR3 22276115 MOAD: Kd=10.8uM
    PDBbind: -logKd/Ki=4.97, Kd=10.8uM
    10130 3qbc:A (1.65) BS02 B55 2.7.6.3 GO:0003848 ... A0A0H3JXR3 22276115 MOAD: Kd=10.8uM
    PDBbind: -logKd/Ki=4.97, Kd=10.8uM
    10131 3qbh:A (2.24) BS01 QBH 3.4.23.46 GO:0004190 ... P56817 21388807 MOAD: ic50=0.15uM
    PDBbind: -logKd/Ki=6.82, IC50=150nM
    BindingDB: IC50=150nM
    10132 3qbn:A (3.5) BS01 E9Z 2.7.11.1 GO:0004672 ... O14965 21671622 PDBbind: -logKd/Ki=8.23, IC50=5.9nM
    10133 3qc4:A (1.8) BS01 MP7 2.7.11.1 GO:0004672 ... O15530 21459573 MOAD: ic50=0.002uM
    PDBbind: -logKd/Ki=8.70, IC50=2nM
    BindingDB: EC50=1nM
    10134 3qc9:A (2.7) BS01 ADP 2.7.11.14 GO:0001750 ... P28327 21265573 PDBbind: -logKd/Ki=6.06, Kd=0.88uM
    10135 3qce:B (2.1) BS01 NXY 3.1.3.48 GO:0004725 ... P23470 21882820 MOAD: Ki=2.5uM
    PDBbind: -logKd/Ki=5.60, Ki=2.5uM
    BindingDB: Ki=2500nM, IC50=2500nM
    10136 3qcf:B (2.5) BS01 NXY 3.1.3.48 GO:0004725 ... P23470 21882820 MOAD: Ki=2.5uM
    PDBbind: -logKd/Ki=5.60, Ki=2.5uM
    BindingDB: Ki=2500nM, IC50=2500nM
    10137 3qch:A (2.4) BS01 NX2 3.1.3.48 GO:0004725 ... P23470 21882820 MOAD: ic50=3.3uM
    PDBbind: -logKd/Ki=5.48, IC50=3.3uM
    BindingDB: IC50=3300nM
    10138 3qci:A (2.27) BS01 NX3 3.1.3.48 GO:0004725 ... P23470 21882820 MOAD: ic50=3.8uM
    PDBbind: -logKd/Ki=5.42, IC50=3.8uM
    BindingDB: IC50=3800nM
    10139 3qcj:A (2.26) BS01 NX4 3.1.3.48 GO:0004725 ... P23470 21882820 MOAD: ic50=0.5uM
    PDBbind: -logKd/Ki=6.30, IC50=0.5uM
    BindingDB: IC50=500nM
    10140 3qck:A (2.05) BS01 NX5 3.1.3.48 GO:0004725 ... P23470 21882820 MOAD: ic50=5.8uM
    PDBbind: -logKd/Ki=5.24, IC50=5.8uM
    BindingDB: IC50=5800nM
    10141 3qcl:A (2.4) BS01 NXV 3.1.3.48 GO:0004725 ... P23470 21882820 MOAD: ic50=4uM
    PDBbind: -logKd/Ki=5.40, IC50=4.0uM
    BindingDB: IC50=4000nM
    10142 3qcq:A (2.501) BS01 3Q0 2.7.11.1 GO:0004672 ... O15530 21341675 MOAD: ic50=0.158uM
    PDBbind: -logKd/Ki=6.80, IC50=0.158uM
    BindingDB: IC50=158nM
    10143 3qcs:A (2.487) BS01 3Q1 2.7.11.1 GO:0004672 ... O15530 21341675 MOAD: ic50=0.316uM
    PDBbind: -logKd/Ki=6.50, IC50=0.316uM
    BindingDB: IC50=316nM
    10144 3qcx:A (2.3) BS01 3Q2 2.7.11.1 GO:0004672 ... O15530 21341675 MOAD: ic50=63nM
    PDBbind: -logKd/Ki=7.20, IC50=63nM
    BindingDB: IC50=63nM
    10145 3qcy:A (2.2) BS01 3Q3 2.7.11.1 GO:0004672 ... O15530 21341675 MOAD: ic50=20nM
    PDBbind: -logKd/Ki=7.70, IC50=20nM
    BindingDB: IC50=20nM
    10146 3qd0:A (1.99) BS01 3Q4 2.7.11.1 GO:0004672 ... O15530 21341675 MOAD: ic50=3.16nM
    PDBbind: -logKd/Ki=8.50, IC50=3.16nM
    BindingDB: IC50=333nM
    10147 3qd3:A (2.0) BS01 3Q5 2.7.11.1 GO:0004672 ... O15530 21341675 MOAD: ic50=0.00000001M
    PDBbind: -logKd/Ki=8.00, IC50=10nM
    BindingDB: IC50=10.0nM
    10148 3qd4:A (2.3) BS01 3Q6 2.7.11.1 GO:0004672 ... O15530 21341675 MOAD: ic50=6.31nM
    PDBbind: -logKd/Ki=8.20, IC50=6.31nM
    BindingDB: IC50=74nM
    10149 3qdd:A (1.79) BS01 94M 3.6.4.10 GO:0005524 ... P07900 22938030 MOAD: Ki=1.7nM
    PDBbind: -logKd/Ki=8.77, Ki=1.7nM
    BindingDB: Ki=1.7nM, EC50=38nM, IC50=5.1nM
    10150 3qei:A (2.178) BS01 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 22304682 PDBbind: Kd=1340uM
    10151 3qei:A (2.178) BS02 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 22304682 PDBbind: Kd=1340uM
    10152 3qel:A (2.6) BS01 QEL ? N/A A0A1L8F5J9 21677647 PDBbind: -logKd/Ki=6.49, Kd=320nM
    10153 3qel:B (2.6) BS01 QEL ? N/A Q00960 21677647 PDBbind: -logKd/Ki=6.49, Kd=320nM
    BindingDB: IC50=20nM, Ki=11nM
    10154 3qem:A (3.003) BS01 QEM ? N/A A0A1L8F5J9 21677647 PDBbind: -logKd/Ki=7.22, Kd=60nM
    10155 3qem:B (3.003) BS01 QEM ? N/A Q00960 21677647 PDBbind: -logKd/Ki=7.22, Kd=60nM
    BindingDB: IC50=6nM
    10156 3qer:A (1.96) BS01 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 22304682 PDBbind: Kd=140uM
    10157 3qer:A (1.96) BS02 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 22304682 PDBbind: Kd=140uM
    10158 3qes:A (1.98) BS01 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 22304682 PDBbind: Kd=2730uM
    10159 3qes:A (1.98) BS02 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 22304682 PDBbind: Kd=2730uM
    10160 3qfq:A (2.9001) BS01 dna ? GO:0003688 ... E2IPT4 21501625 PDBbind: Kd=741nM
    10161 3qfq:A (2.9001) BS02 dna ? GO:0003688 ... E2IPT4 21501625 PDBbind: Kd=741nM
    10162 3qfq:B (2.9001) BS01 dna ? GO:0003688 ... E2IPT4 21501625 PDBbind: Kd=741nM
    10163 3qfq:B (2.9001) BS02 dna ? GO:0003688 ... E2IPT4 21501625 PDBbind: Kd=741nM
    10164 3qfq:E (2.9001) BS01 dna ? GO:0003688 ... E2IPT4 21501625 PDBbind: Kd=741nM
    10165 3qfq:E (2.9001) BS02 dna ? GO:0003688 ... E2IPT4 21501625 PDBbind: Kd=741nM
    10166 3qfv:A (2.65) BS01 NM7 2.7.11.1 GO:0004672 ... Q9Y5S2 21949762 PDBbind: -logKd/Ki=5.77, IC50=1.69uM
    10167 3qfy:A (2.3) BS02 IFM 2.4.1.20 GO:0003824 ... O66264 N/A PDBbind: -logKd/Ki=6.12, Ki=0.75uM
    10168 3qfy:B (2.3) BS02 IFM 2.4.1.20 GO:0003824 ... O66264 N/A PDBbind: -logKd/Ki=6.12, Ki=0.75uM
    10169 3qfz:A (2.39) BS02 NOJ 2.4.1.20 GO:0003824 ... O66264 N/A PDBbind: -logKd/Ki=3.24, Ki=570uM
    10170 3qfz:B (2.39) BS02 NOJ 2.4.1.20 GO:0003824 ... O66264 N/A PDBbind: -logKd/Ki=3.24, Ki=570uM
    10171 3qg9:A (2.25) BS01 rna ? GO:0003723 ... Q09312 21372189 PDBbind: Kd=18nM
    10172 3qgb:A (2.4) BS01 rna ? GO:0003723 ... Q09312 21372189 PDBbind: Kd=3.5nM
    10173 3qgc:A (1.9) BS01 rna ? GO:0003723 ... Q09312 21372189 PDBbind: Kd=8.8nM
    10174 3qgw:B (2.1) BS01 L7A 2.7.10.2 GO:0004672 ... Q08881 21391610 MOAD: Ki=1.3uM
    PDBbind: -logKd/Ki=5.89, Ki=1.3uM
    BindingDB: Ki=1300nM
    10175 3qgy:B (2.1) BS01 L7O 2.7.10.2 GO:0004672 ... Q08881 21391610 MOAD: Ki=0.016uM
    PDBbind: -logKd/Ki=7.80, Ki=16nM
    BindingDB: Ki=16nM
    10176 3qi1:A (2.3) BS01 C6A 3.4.23.46 GO:0004190 ... P56817 23856050 PDBbind: -logKd/Ki=7.66, IC50=22nM
    10177 3qi3:A (2.3) BS01 PDB 3.1.4.35 GO:0004114 ... O76083 21483814 PDBbind: -logKd/Ki=3.78, IC50=164.2uM
    10178 3qi5:A (2.2) BS01 dna 3.2.2.21 GO:0003677 ... P29372 21349833 PDBbind: Kd=21nM
    10179 3qi5:A (2.2) BS02 dna 3.2.2.21 GO:0003677 ... P29372 21349833 PDBbind: Kd=21nM
    10180 3qi5:B (2.2) BS01 dna 3.2.2.21 GO:0003677 ... P29372 21349833 PDBbind: Kd=21nM
    10181 3qi5:B (2.2) BS02 dna 3.2.2.21 GO:0003677 ... P29372 21349833 PDBbind: Kd=21nM
    10182 3qin:A (1.6967) BS03 P1Y 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.1.26.4
    3.4.23.16    		 GO:0003676 ... P04585
    P0A7Y4    		 21464257 MOAD: Kd=136nM
    PDBbind: -logKd/Ki=6.87, Kd=136nM
    10183 3qio:A (1.4011) BS03 QID 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.1.26.4
    3.4.23.16    		 GO:0003676 ... P04585
    P0A7Y4    		 21464257 MOAD: Kd=144nM
    PDBbind: -logKd/Ki=6.84, Kd=144nM
    10184 3qip:A (2.0926) BS03 P4Y 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P04585 21464257 PDBbind: -logKd/Ki=6.89, Kd=129nM
    10185 3qiy:A (2.3) BS02 QI1 N/A GO:0004222 ... N/A 21434688 MOAD: Ki=4.6uM
    PDBbind: -logKd/Ki=5.34, Ki=4.6uM
    10186 3qiz:A (2.0) BS02 QI2 N/A GO:0004222 ... N/A 21434688 MOAD: Ki=6.1uM
    PDBbind: -logKd/Ki=5.21, Ki=6.1uM
    10187 3qj0:A (2.301) BS02 QI3 N/A GO:0004222 ... N/A 21434688 MOAD: Ki=6.3uM
    PDBbind: -logKd/Ki=5.20, Ki=6.3uM
    10188 3qj9:A (2.3) BS01 QJ9 3.1.1.-
    3.5.1.99    		 GO:0000139 ... P97612 21502526 MOAD: ic50=951nM
    PDBbind: -logKd/Ki=7.00, IC50=0.10uM
    BindingDB: IC50=60nM
    10189 3qk0:A (2.85) BS01 QK0 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 GO:0016301 ... P48736 21332118 PDBbind: -logKd/Ki=8.70, Ki=2.0nM
    BindingDB: Ki=4.7nM
    10190 3qk5:A (2.2) BS01 QK5 3.1.1.-
    3.5.1.99    		 GO:0000139 ... P97612 21392988 MOAD: ic50=0.018uM
    PDBbind: -logKd/Ki=7.74, IC50=18nM
    BindingDB: IC50=18nM
    10191 3qkd:A (2.02) BS01 HI0 ? GO:0042981 ... Q07817 21366295 MOAD: ic50=3nM
    PDBbind: -logKd/Ki=8.38, Kd=4.2nM
    BindingDB: IC50=7nM, Kd=4.2nM
    10192 3qkk:A (2.3) BS02 SMH 2.7.11.1 GO:0004672 ... P31749 21392984 PDBbind: -logKd/Ki=6.52, IC50=0.3uM
    10193 3qkl:A (1.9) BS02 SMR 2.7.11.1 GO:0004672 ... P31749 21392984 PDBbind: -logKd/Ki=8.05, IC50=9nM
    10194 3qkm:A (2.2) BS01 SM9 2.7.11.1 GO:0004672 ... P31749 21420856 MOAD: ic50=0.038uM
    PDBbind: -logKd/Ki=7.42, IC50=38nM
    10195 3qkv:B (3.1) BS01 QKV 3.1.1.-
    3.5.1.99    		 GO:0000139 ... P97612 21502526 PDBbind: -logKd/Ki=7.44, IC50=36nM
    10196 3qlb:A (3.26) BS01 EFE ? GO:0009279 ... C5I2D9 21902256 PDBbind: -logKd/Ki=8.43, Kd=3.7nM
    10197 3qmb:A (2.06) BS01 dna ? GO:0003677 ... Q9P0U4 21407193 PDBbind: Kd=3.5uM
    10198 3qmb:A (2.06) BS02 dna ? GO:0003677 ... Q9P0U4 21407193 PDBbind: Kd=3.5uM
    10199 3qmh:A (2.5) BS01 dna ? GO:0003677 ... Q9P0U4 21407193 PDBbind: Kd=17uM
    10200 3qmh:A (2.5) BS02 dna ? GO:0003677 ... Q9P0U4 21407193 PDBbind: Kd=17uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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