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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 24809 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5001 2nn1:A (1.65) BS02 M28 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 17407288 MOAD: Kd=1.5uM
    PDBbind: -logKd/Ki=5.82, Kd=1.5uM
    BindingDB: Ki=6690nM
    5002 2nn7:A (1.85) BS02 M29 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 17407288 MOAD: Kd=0.3uM
    PDBbind: -logKd/Ki=6.52, Kd=0.3uM
    5003 2nnd:A (1.6) BS01 PRZ ? GO:0036094 ... P02762 17991731 MOAD: Kd=0.87uM
    PDBbind: -logKd/Ki=6.06, Kd=0.87uM
    5004 2nng:A (1.2) BS02 ZYX 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 17407288 MOAD: Kd=4.4uM
    PDBbind: -logKd/Ki=5.36, Kd=4.4uM
    BindingDB: Ki=160nM, IC50=3100nM
    5005 2nnk:A (1.25) BS01 ROC 3.4.23.16 GO:0004190 ... Q7SSI0 17243183 PDBbind: -logKd/Ki=8.37, Ki=4.3nM
    5006 2nnk:B (1.25) BS01 ROC 3.4.23.16 GO:0004190 ... Q7SSI0 17243183 PDBbind: -logKd/Ki=8.37, Ki=4.3nM
    5007 2nno:A (1.01) BS02 M28 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 17407288 MOAD: Kd=0.4uM
    PDBbind: -logKd/Ki=6.40, Kd=0.4uM
    BindingDB: Ki=495nM
    5008 2nno:A (1.01) BS03 M28 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 17407288 MOAD: Kd=0.4uM
    PDBbind: -logKd/Ki=6.40, Kd=0.4uM
    BindingDB: Ki=495nM
    5009 2nnp:A (1.2) BS01 ROC 3.4.23.16 GO:0004190 ... Q7SSI0 17243183 PDBbind: -logKd/Ki=8.37, Ki=4.3nM
    5010 2nnp:B (1.2) BS01 ROC 3.4.23.16 GO:0004190 ... Q7SSI0 17243183 PDBbind: -logKd/Ki=8.37, Ki=4.3nM
    5011 2nnq:A (1.8) BS01 T4B ? GO:0005324 ... P15090 17502136 MOAD: Ki<2nM
    PDBbind: -logKd/Ki=8.70, Ki=2nM
    BindingDB: Kd=2050nM, Ki=220nM, IC50=221nM
    5012 2nns:A (1.03) BS02 M25 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 17407288 MOAD: Kd=0.9uM
    PDBbind: -logKd/Ki=6.05, Kd=0.9uM
    5013 2nns:A (1.03) BS03 M25 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 17407288 MOAD: Kd=0.9uM
    PDBbind: -logKd/Ki=6.05, Kd=0.9uM
    5014 2nnv:A (1.1) BS02 M29 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 17407288 MOAD: Kd=0.03uM
    PDBbind: -logKd/Ki=7.52, Kd=0.03uM
    5015 2nnv:A (1.1) BS03 M29 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 17407288 MOAD: Kd=0.03uM
    PDBbind: -logKd/Ki=7.52, Kd=0.03uM
    5016 2no3:A (3.2) BS02 859 2.7.11.24 GO:0004672 ... P45983 17107797 PDBbind: -logKd/Ki=8.05, IC50=9nM
    BindingDB: IC50=170nM
    5017 2noe:A (2.2) BS01 dna 3.2.2.-
    4.2.99.18    		 GO:0000978 ... O15527 17114185 PDBbind: Kd=15nM
    5018 2noe:A (2.2) BS02 dna 3.2.2.-
    4.2.99.18    		 GO:0000978 ... O15527 17114185 PDBbind: Kd=15nM
    5019 2np2:A (3.02) BS01 dna ? GO:0003677 ... Q57267 17244195 PDBbind: Kd=55nM
    5020 2np2:A (3.02) BS02 dna ? GO:0003677 ... Q57267 17244195 PDBbind: Kd=55nM
    5021 2np2:B (3.02) BS01 dna ? GO:0003677 ... Q57267 17244195 PDBbind: Kd=55nM
    5022 2np2:B (3.02) BS02 dna ? GO:0003677 ... Q57267 17244195 PDBbind: Kd=55nM
    5023 2np8:A (2.25) BS01 CC3 2.7.11.1 GO:0000212 ... O14965 17157005 MOAD: ic50=42nM
    PDBbind: -logKd/Ki=7.38, IC50=42nM
    BindingDB: IC50=42nM
    5024 2np9:A (2.45) BS01 YE1 1.13.11.80 GO:0006635 ... Q8KLK7 17507985 MOAD: Ki=2.7uM
    PDBbind: -logKd/Ki=5.57, Ki=2.7uM
    5025 2nq6:A (1.5) BS04 HM4 3.4.11.18 GO:0006508 ... P53582 17114291 MOAD: ic50=1.5uM
    PDBbind: -logKd/Ki=5.82, IC50=1.5uM
    BindingDB: EC50=>40000nM, IC50=400nM
    5026 2nq7:A (1.6) BS03 HM5 3.4.11.18 GO:0006508 ... P53582 17114291 MOAD: ic50=2.9uM
    PDBbind: -logKd/Ki=5.54, IC50=2.9uM
    BindingDB: IC50=2900nM
    5027 2nq9:A (1.45) BS01 dna 3.1.21.2 GO:0003677 ... P0A6C1 18408731 PDBbind: Kd=97nM
    5028 2nq9:A (1.45) BS02 dna 3.1.21.2 GO:0003677 ... P0A6C1 18408731 PDBbind: Kd=97nM
    5029 2nq9:A (1.45) BS03 dna 3.1.21.2 GO:0003677 ... P0A6C1 18408731 PDBbind: Kd=97nM
    5030 2nqg:A (2.04) BS03 NQG 3.4.22.52 GO:0004198 ... P97571 17218315 PDBbind: -logKd/Ki=6.48, IC50=333nM
    5031 2nqi:A (2.04) BS03 NQI 3.4.22.52 GO:0004198 ... P97571 17218315 PDBbind: -logKd/Ki=6.11, IC50=784nM
    5032 2nqj:A (2.45) BS01 dna 3.1.21.2 GO:0003677 ... P0A6C1 18408731 PDBbind: Kd=114nM
    5033 2nqj:A (2.45) BS02 dna 3.1.21.2 GO:0003677 ... P0A6C1 18408731 PDBbind: Kd=114nM
    5034 2nr0:A (3.9) BS01 rna 5.4.99.12 GO:0000049 ... P07649 17466622 PDBbind: Kd=1.05uM
    5035 2nr0:A (3.9) BS02 rna 5.4.99.12 GO:0000049 ... P07649 17466622 PDBbind: Kd=1.05uM
    5036 2nr0:A (3.9) BS03 rna 5.4.99.12 GO:0000049 ... P07649 17466622 PDBbind: Kd=1.05uM
    5037 2nr0:B (3.9) BS01 rna 5.4.99.12 GO:0000049 ... P07649 17466622 PDBbind: Kd=1.05uM
    5038 2nr0:B (3.9) BS02 rna 5.4.99.12 GO:0000049 ... P07649 17466622 PDBbind: Kd=1.05uM
    5039 2nr0:C (3.9) BS01 rna 5.4.99.12 GO:0000049 ... P07649 17466622 PDBbind: Kd=1.05uM
    5040 2nr0:C (3.9) BS02 rna 5.4.99.12 GO:0000049 ... P07649 17466622 PDBbind: Kd=1.05uM
    5041 2nr0:D (3.9) BS01 rna 5.4.99.12 GO:0000049 ... P07649 17466622 PDBbind: Kd=1.05uM
    5042 2nr0:D (3.9) BS02 rna 5.4.99.12 GO:0000049 ... P07649 17466622 PDBbind: Kd=1.05uM
    5043 2nsj:A (2.31) BS01 C2R 5.4.99.18 GO:0003824 ... P0AG18 17298082 MOAD: Kd=16.3uM
    PDBbind: -logKd/Ki=4.79, Kd=16.3uM
    5044 2nsl:A (2.0) BS01 C2R 5.4.99.18 GO:0003824 ... P0AG18 17298082 MOAD: Kd=20.9uM
    PDBbind: -logKd/Ki=4.68, Kd=20.9uM
    5045 2nsx:B (2.11) BS01 IFM 2.4.1.-
    3.2.1.-
    3.2.1.45
    3.2.1.46    		 GO:0004336 ... P04062 17187079 MOAD: ic50=59nM
    PDBbind: -logKd/Ki=7.20, IC50=0.063uM
    BindingDB: Ki=1.70nM, IC50=8.20nM
    5046 2nt7:A (2.1) BS01 902 3.1.3.48 GO:0004725 ... P18031 17336064 MOAD: Ki=0.3uM
    PDBbind: -logKd/Ki=6.52, Ki=0.30uM
    5047 2nta:A (2.1) BS01 521 3.1.3.48 GO:0004725 ... P18031 17336064 MOAD: Ki=16uM
    PDBbind: -logKd/Ki=4.80, Ki=16uM
    5048 2ntc:A (2.4) BS01 dna ? GO:0003688 ... Q98ZP7 17253903 PDBbind: Kd=60nM
    5049 2ntc:A (2.4) BS02 dna ? GO:0003688 ... Q98ZP7 17253903 PDBbind: Kd=60nM
    5050 2ntc:B (2.4) BS01 dna ? GO:0003688 ... Q98ZP7 17253903 PDBbind: Kd=60nM
    5051 2ntc:B (2.4) BS02 dna ? GO:0003688 ... Q98ZP7 17253903 PDBbind: Kd=60nM
    5052 2ntf:H (3.18) BS01 OHM ? N/A Q99LC4 17400249 PDBbind: -logKd/Ki=6.52, Kd=300nM
    5053 2ntf:L (3.18) BS01 OHM N/A N/A N/A 17400249 PDBbind: -logKd/Ki=6.52, Kd=300nM
    5054 2ntz:A (3.35) BS01 dna ? N/A Q38420 17293348 PDBbind: Kd=49nM
    5055 2ntz:A (3.35) BS02 dna ? N/A Q38420 17293348 PDBbind: Kd=49nM
    5056 2ntz:B (3.35) BS01 dna ? N/A Q38420 17293348 PDBbind: Kd=49nM
    5057 2ntz:B (3.35) BS02 dna ? N/A Q38420 17293348 PDBbind: Kd=49nM
    5058 2nv7:A (2.1) BS02 555 ? GO:0003677 ... Q92731 17188490 MOAD: ic50=5nM
    PDBbind: -logKd/Ki=8.30, IC50=5nM
    5059 2nw4:A (3.0) BS01 8NH ? N/A P15207 17008401 PDBbind: -logKd/Ki=8.68, Ki=2.11nM
    5060 2nwl:A (2.96) BS01 ASP ? GO:0005283 ... O59010 17230192 PDBbind: -logKd/Ki=8.70, Kd=2nM
    BindingDB: Kd=1.000000nM
    5061 2nww:A (3.2) BS01 TB1 ? GO:0005283 ... O59010 17230192 PDBbind: -logKd/Ki=5.48, IC50=3.3uM
    BindingDB: Kd=100nM
    5062 2nyr:A (2.06) BS02 SVR 2.3.1.- GO:0036054 ... Q9NXA8 17355872 PDBbind: -logKd/Ki=4.66, IC50=22uM
    BindingDB: IC50=25000nM
    5063 2nyr:B (2.06) BS01 SVR 2.3.1.- GO:0036054 ... Q9NXA8 17355872 PDBbind: -logKd/Ki=4.66, IC50=22uM
    BindingDB: IC50=25000nM
    5064 2o0u:A (2.1) BS01 C0M 2.7.11.24 GO:0004672 ... P53779 17194588 MOAD: ic50=3.2uM
    PDBbind: -logKd/Ki=5.49, Ki=3.2uM
    BindingDB: IC50=3162.28nM
    5065 2o1v:A (2.45) BS01 ADP ? GO:0005524 ... P41148 17936703 MOAD: Kd~5uM
    PDBbind: -logKd/Ki=5.30, Kd=5uM
    BindingDB: IC50=11447nM, EC50=21000nM
    5066 2o22:A (-1.00) BS01 LIU ? GO:0042981 ... P10415 17256834 PDBbind: -logKd/Ki=7.17, Ki=67nM
    5067 2o2u:A (2.45) BS01 738 2.7.11.24 GO:0004672 ... P53779 17194588 MOAD: ic50=0.4uM
    PDBbind: -logKd/Ki=6.40, Ki=0.4uM
    BindingDB: IC50=398.11nM
    5068 2o3p:A (2.24) BS01 QUE 2.7.11.1 GO:0004672 ... P11309 17218638 MOAD: ic50=1.1uM
    PDBbind: -logKd/Ki=5.96, IC50=1.1uM
    BindingDB: IC50=1100nM, Kd=25nM
    5069 2o3z:A (2.25) BS03 AI7 3.5.1.108 GO:0006796 ... O67648 17296300 MOAD: Kd=2uM
    PDBbind: -logKd/Ki=5.70, Kd=2uM
    5070 2o3z:B (2.25) BS01 AI7 3.5.1.108 GO:0006796 ... O67648 17296300 MOAD: Kd=2uM
    PDBbind: -logKd/Ki=5.70, Kd=2uM
    5071 2o3z:B (2.25) BS05 AI7 3.5.1.108 GO:0006796 ... O67648 17296300 MOAD: Kd=2uM
    PDBbind: -logKd/Ki=5.70, Kd=2uM
    5072 2o4h:A (2.7) BS02 AS9 3.5.1.15 GO:0005515 ... P45381 18293939 PDBbind: -logKd/Ki=6.52, Ki=300nM
    5073 2o4j:A (1.74) BS02 VD4 ? GO:0003677 ... P13053 17227670 MOAD: Ki=0.08nM
    PDBbind: -logKd/Ki=10.10, Ki=0.08nM
    5074 2o4k:A (1.6) BS01 DR7 ? GO:0004190 ... Q903J0 17360759 MOAD: Kd=35pM
    PDBbind: -logKd/Ki=10.46, Kd=35pM
    5075 2o4k:B (1.6) BS01 DR7 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 17360759 PDBbind: -logKd/Ki=10.46, Kd=35pM
    5076 2o4l:A (1.33) BS01 TPV ? GO:0004190 ... Q1G1C3 17360759 MOAD: Kd=608pM
    PDBbind: -logKd/Ki=9.22, Kd=608pM
    5077 2o4l:B (1.33) BS01 TPV 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 17360759 PDBbind: -logKd/Ki=9.22, Kd=608pM
    5078 2o4n:A (2.0) BS01 TPV 3.1.26.13 GO:0004190 ... Q90SN9 17360759 MOAD: Kd=15010pM
    PDBbind: -logKd/Ki=7.82, Kd=15nM
    5079 2o4n:B (2.0) BS01 TPV 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 17360759 PDBbind: -logKd/Ki=7.82, Kd=15nM
    5080 2o4p:A (1.8) BS01 TPV ? GO:0004190 ... Q5RZ08 17360759 MOAD: Kd=19pM
    PDBbind: -logKd/Ki=10.72, Kd=19pM
    5081 2o4p:B (1.8) BS01 TPV ? GO:0004190 ... Q5RZ08 17360759 PDBbind: -logKd/Ki=10.72, Kd=19pM
    5082 2o4r:A (1.98) BS02 VD5 ? GO:0003677 ... P13053 17227670 MOAD: Ki=0.4nM
    PDBbind: -logKd/Ki=9.40, Ki=0.4nM
    5083 2o4s:A (1.54) BS01 AB1 ? GO:0004190 ... Q5RZ08 17360759 MOAD: Kd=31pM
    PDBbind: -logKd/Ki=10.51, Kd=31pM
    5084 2o4s:B (1.54) BS01 AB1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 17360759 PDBbind: -logKd/Ki=10.51, Kd=31pM
    5085 2o4z:A (2.1) BS02 HSW 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 17346964 MOAD: Ki=566nM
    PDBbind: -logKd/Ki=6.25, Ki=566nM
    BindingDB: Ki=566nM
    5086 2o5d:A (2.2) BS01 VR1 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 17276060 MOAD: ic50=7uM
    PDBbind: -logKd/Ki=5.15, IC50=7uM
    5087 2o5k:A (3.2) BS01 HBM 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P49841 17764934 PDBbind: -logKd/Ki=7.82, IC50=15nM
    BindingDB: IC50=15nM
    5088 2o63:A (2.0) BS01 MYC 2.7.11.1 GO:0004672 ... P11309 17218638 MOAD: ic50=0.78uM
    PDBbind: -logKd/Ki=6.11, IC50=0.78uM
    BindingDB: IC50=780nM
    5089 2o64:A (2.44) BS01 MYU 2.7.11.1 GO:0004672 ... P11309 17218638 MOAD: ic50=0.34uM
    PDBbind: -logKd/Ki=6.47, IC50=0.34uM
    BindingDB: IC50=340nM
    5090 2o65:A (2.85) BS01 MYF 2.7.11.1 GO:0004672 ... P11309 17218638 PDBbind: -logKd/Ki=6.19, IC50=0.65uM
    BindingDB: IC50=650nM
    5091 2o6m:A (2.3) BS01 dna 3.1.-.- GO:0004519 ... Q94702 17516660 PDBbind: Kd=13nM
    5092 2o6m:A (2.3) BS02 dna 3.1.-.- GO:0004519 ... Q94702 17516660 PDBbind: Kd=13nM
    5093 2o6m:B (2.3) BS01 dna 3.1.-.- GO:0004519 ... Q94702 17516660 PDBbind: Kd=13nM
    5094 2o6m:B (2.3) BS02 dna 3.1.-.- GO:0004519 ... Q94702 17516660 PDBbind: Kd=13nM
    5095 2o7e:A (1.75) BS01 PMI 4.3.1.23 GO:0003824 ... Q3IWB0 17185228 PDBbind: -logKd/Ki=6.22, Ki=0.6uM
    5096 2o7e:A (1.75) BS02 PMI 4.3.1.23 GO:0003824 ... Q3IWB0 17185228 PDBbind: -logKd/Ki=6.22, Ki=0.6uM
    5097 2o7e:B (1.75) BS01 PMI 4.3.1.23 GO:0003824 ... Q3IWB0 17185228 PDBbind: -logKd/Ki=6.22, Ki=0.6uM
    5098 2o7e:B (1.75) BS02 PMI 4.3.1.23 GO:0003824 ... Q3IWB0 17185228 PDBbind: -logKd/Ki=6.22, Ki=0.6uM
    5099 2o7e:D (1.75) BS01 PMI 4.3.1.23 GO:0003824 ... Q3IWB0 17185228 PDBbind: -logKd/Ki=6.22, Ki=0.6uM
    5100 2o7e:D (1.75) BS02 PMI 4.3.1.23 GO:0003824 ... Q3IWB0 17185228 PDBbind: -logKd/Ki=6.22, Ki=0.6uM
    5101 2o7n:A (1.75) BS01 2O7 ? N/A P20701 17291752 MOAD: ic50=15nM
    PDBbind: -logKd/Ki=7.82, IC50=15nM
    5102 2o8h:A (1.8) BS02 227 3.1.4.17 GO:0004114 ... Q9QYJ6 17228859 MOAD: Ki=25nM
    PDBbind: -logKd/Ki=7.60, Ki=25nM
    BindingDB: Ki=25nM
    5103 2o8k:A (-1.00) BS01 dna ? GO:0001216 ... O66858 17481658 PDBbind: Kd=114nM
    5104 2o8k:A (-1.00) BS02 dna ? GO:0001216 ... O66858 17481658 PDBbind: Kd=114nM
    5105 2o9a:A (1.8) BS01 PYR ? N/A P16528 17426033 PDBbind: -logKd/Ki=3.81, Kd=156.2uM
    5106 2o9a:D (1.8) BS01 PYR ? N/A P16528 17426033 PDBbind: -logKd/Ki=3.81, Kd=156.2uM
    5107 2o9i:A (2.8) BS02 444 ? GO:0003677 ... O75469 17215127 PDBbind: -logKd/Ki=7.40, IC50=40nM
    BindingDB: EC50=36nM, IC50=40nM
    5108 2o9j:A (2.65) BS03 CZA 7.2.2.10 GO:0000166 ... P04191 17259168 PDBbind: -logKd/Ki=6.92, Ki=120nM
    5109 2o9l:A (-1.00) BS01 dna ? GO:0001216 ... O66858 17481658 PDBbind: Kd=114nM
    5110 2o9l:A (-1.00) BS02 dna ? GO:0001216 ... O66858 17481658 PDBbind: Kd=114nM
    5111 2oa0:A (3.4) BS01 CZA 7.2.2.10 GO:0000166 ... P04191 17259168 PDBbind: -logKd/Ki=6.92, Ki=120nM
    5112 2oag:B (2.3) BS01 DLI 3.4.14.5 GO:0001618 ... P27487 17276063 MOAD: Ki=3.4nM
    PDBbind: -logKd/Ki=8.47, Ki=3.4nM
    BindingDB: Ki=3.4nM
    5113 2oah:A (1.8) BS01 QIN 3.4.23.46 GO:0004190 ... P56817 17257835 MOAD: ic50=11nM
    PDBbind: -logKd/Ki=7.96, IC50=11nM
    BindingDB: IC50=11nM
    5114 2oax:A (2.29) BS01 SNL ? N/A P08235 17569793 PDBbind: -logKd/Ki=8.65, Ki=2.232nM
    BindingDB: IC50=11nM, Ki=2.323nM
    5115 2oaz:A (1.9) BS03 I96 3.4.11.18 GO:0006508 ... P50579 17636946 MOAD: Ki=2nM
    PDBbind: -logKd/Ki=8.70, Ki=2nM
    5116 2obf:A (2.3) BS01 F83 2.1.1.28 GO:0004603 ... P11086 17845018 MOAD: Ki=1.4nM
    PDBbind: -logKd/Ki=8.85, Ki=1.4nM
    BindingDB: Ki=63nM
    5117 2obj:A (2.5) BS01 VRV 2.7.11.1 GO:0004672 ... P11309 17251021 MOAD: ic50=0.05uM
    PDBbind: -logKd/Ki=7.30, IC50=0.05uM
    BindingDB: IC50=50nM
    5118 2obo:A (2.6) BS04 HUD 3.6.4.13 GO:0006508 ... Q91RS4 17444623 PDBbind: -logKd/Ki=7.24, Ki=57nM
    5119 2oc0:A (2.3) BS04 HU1 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0006508 ... P27958 17444623 PDBbind: -logKd/Ki=7.82, Ki=15nM
    5120 2oc1:A (2.7) BS04 HU2 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0006508 ... P27958 17444623 PDBbind: -logKd/Ki=5.37, Ki=4.3uM
    5121 2oc2:A (2.25) BS02 RX3 3.4.15.1 GO:0006508 ... P12821 17439247 MOAD: Ki=3nM
    PDBbind: -logKd/Ki=8.52, Ki=3nM
    BindingDB: Ki=3nM
    5122 2oc4:A (2.592) BS01 IMH 2.4.2.1 GO:0000255 ... P00491 17407325 PDBbind: -logKd/Ki=7.07, Ki=86nM
    5123 2oc7:A (2.7) BS03 HU4 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0006508 ... P27958 17444623 PDBbind: -logKd/Ki=5.85, Ki=1.4uM
    5124 2oc9:A (2.59) BS01 IMH 2.4.2.1 GO:0000255 ... P00491 17407325 PDBbind: -logKd/Ki=7.96, Ki=11nM
    5125 2of2:A (2.0) BS01 547 2.7.10.2 GO:0004672 ... P06239 17276681 MOAD: ic50=0.21uM
    PDBbind: -logKd/Ki=6.68, IC50=0.21uM
    BindingDB: IC50=210nM
    5126 2of4:A (2.7) BS01 979 2.7.10.2 GO:0004672 ... P06239 17276681 PDBbind: -logKd/Ki=7.09, IC50=81nM
    BindingDB: IC50=81nM
    5127 2off:A (2.2) BS01 OFF 2.4.1.1 GO:0000166 ... P00489 17600143 MOAD: Ki=0.46uM
    PDBbind: -logKd/Ki=6.52, IC50=0.3uM
    BindingDB: Ki=460nM
    5128 2ofu:A (2.0) BS01 1N9 2.7.10.2 GO:0004672 ... P06239 16884310 MOAD: ic50=0.0006uM
    PDBbind: -logKd/Ki=9.00, IC50=1nM
    BindingDB: IC50=0.6nM
    5129 2ofv:A (2.0) BS01 242 2.7.10.2 GO:0004672 ... P06239 16970394 MOAD: ic50=0.2nM
    PDBbind: -logKd/Ki=9.70, IC50=0.2nM
    BindingDB: IC50=0.2nM
    5130 2og8:A (2.3) BS01 1N8 2.7.10.2 GO:0004672 ... P06239 16970394 MOAD: ic50=0.5nM
    PDBbind: -logKd/Ki=9.30, IC50=0.5nM
    BindingDB: IC50=0.500000nM
    5131 2ogm:B (3.5) BS01 rna ? GO:0003735 ... Q9RXK2 17360517 PDBbind: Kd=11.1nM
    5132 2ogn:B (3.56) BS01 rna ? GO:0003735 ... Q9RXK2 17360517 PDBbind: Kd=7.5nM
    5133 2ogo:B (3.66) BS01 rna ? GO:0003735 ... Q9RXK2 17360517 PDBbind: Kd=2.0nM
    5134 2ogy:A (2.3) BS02 C2F 2.1.1.258 GO:0005509 ... Q46389 17172470 MOAD: Kd=33.2uM
    PDBbind: -logKd/Ki=4.48, Kd=33.2uM
    5135 2ogz:A (2.1) BS01 U1N 3.4.14.5 GO:0001618 ... P27487 17239592 MOAD: ic50=84nM
    PDBbind: -logKd/Ki=7.08, IC50=84nM
    BindingDB: IC50=84nM
    5136 2oh0:E (2.2) BS02 2PY 2.7.11.11 GO:0001669 ... P00517 17258463 MOAD: ic50=18nM
    PDBbind: -logKd/Ki=7.74, IC50=18nM
    5137 2oh4:A (2.05) BS01 GIG 2.7.10.1 GO:0004672 ... P35968 17676829 MOAD: ic50=3.5nM
    PDBbind: -logKd/Ki=8.46, IC50=3.5nM
    5138 2ohk:A (2.2) BS01 1SQ 3.4.23.46 GO:0004190 ... P56817 17315856 PDBbind: -logKd/Ki=2.70, IC50~2000uM
    BindingDB: IC50=2000000nM
    5139 2ohl:A (2.65) BS01 2AQ 3.4.23.46 GO:0004190 ... P56817 17315856 PDBbind: -logKd/Ki=3.05, Kd=900uM
    BindingDB: IC50=800000nM, Kd=900000nM
    5140 2ohm:A (2.7) BS01 8AP 3.4.23.46 GO:0004190 ... P56817 17315856 PDBbind: -logKd/Ki=3.51, IC50=310uM
    BindingDB: IC50=310000nM
    5141 2ohp:A (2.25) BS01 6IP 3.4.23.46 GO:0004190 ... P56817 17315857 MOAD: ic50=94uM
    PDBbind: -logKd/Ki=4.03, IC50=94uM
    BindingDB: IC50=94000nM
    5142 2ohq:A (2.1) BS01 7IP 3.4.23.46 GO:0004190 ... P56817 17315857 MOAD: ic50=25uM
    PDBbind: -logKd/Ki=4.60, IC50=25uM
    BindingDB: IC50=25000nM
    5143 2ohr:A (2.25) BS01 8IP 3.4.23.46 GO:0004190 ... P56817 17315857 MOAD: ic50=100uM
    PDBbind: -logKd/Ki=4.00, IC50=100uM
    BindingDB: IC50=100000nM
    5144 2ohs:A (2.45) BS01 9IP 3.4.23.46 GO:0004190 ... P56817 17315857 MOAD: ic50=40uM
    PDBbind: -logKd/Ki=4.40, IC50=40uM
    BindingDB: IC50=40000nM
    5145 2oht:A (2.3) BS01 IP6 3.4.23.46 GO:0004190 ... P56817 17315857 MOAD: ic50=9.1uM
    PDBbind: -logKd/Ki=5.04, IC50=9.1uM
    BindingDB: IC50=9100nM
    5146 2ohu:A (2.35) BS01 IP7 3.4.23.46 GO:0004190 ... P56817 17315857 MOAD: ic50=4.2uM
    PDBbind: -logKd/Ki=5.38, IC50=4.2uM
    BindingDB: IC50=4200nM
    5147 2ohv:A (2.5) BS01 NHL 5.1.1.3 GO:0008360 ... Q9A1B7 17658548 MOAD: Ki=16nM
    PDBbind: -logKd/Ki=6.46, IC50=0.35uM
    5148 2oi0:A (2.0) BS02 283 3.4.24.86 GO:0004222 ... P78536 17289381 MOAD: Ki=28nM
    PDBbind: -logKd/Ki=7.55, Ki=28nM
    5149 2oi2:A (2.5) BS02 DP6 2.7.1.36 GO:0004496 ... A0A0H2UNK6 17400916 MOAD: Kd=500nM
    PDBbind: -logKd/Ki=6.30, Kd=500nM
    5150 2oic:A (2.4) BS01 STU 2.7.11.1 GO:0000287 ... Q9NWZ3 17312103 MOAD: ic50=4nM
    PDBbind: -logKd/Ki=8.40, IC50=4nM
    5151 2oiq:A (2.07) BS01 STI 2.7.10.2 GO:0004672 ... P00523 17355866 MOAD: Kd=42uM
    PDBbind: -logKd/Ki=5.00, Kd=10uM
    BindingDB: IC50=2784nM
    5152 2oj9:A (2.0) BS01 BMI 2.7.10.1 GO:0004672 ... P08069 17317169 MOAD: ic50=0.39uM
    PDBbind: -logKd/Ki=6.41, IC50=0.39uM
    BindingDB: IC50=390nM
    5153 2ojf:E (2.1) BS02 4PY 2.7.11.11 GO:0001669 ... P00517 17258463 MOAD: ic50=110nM
    PDBbind: -logKd/Ki=6.96, IC50=110nM
    5154 2ojg:A (2.0) BS01 19A 2.7.11.24 GO:0000165 ... P28482 17300186 MOAD: Ki=2.3uM
    PDBbind: -logKd/Ki=5.64, Ki=2.3uM
    BindingDB: Ki=2300nM
    5155 2oji:A (2.6) BS01 33A 2.7.11.24 GO:0000165 ... P28482 17300186 PDBbind: -logKd/Ki=7.07, Ki=86nM
    BindingDB: Ki=85nM
    5156 2ojj:A (2.4) BS01 82A 2.7.11.24 GO:0000165 ... P28482 17300186 MOAD: Ki=0.002uM
    PDBbind: -logKd/Ki=8.70, Ki=2nM
    BindingDB: Ki=2nM
    5157 2ok1:A (2.4) BS01 33A 2.7.11.24 GO:0004672 ... P53779 17300186 MOAD: Ki=0.55uM
    PDBbind: -logKd/Ki=6.26, Ki=0.55uM
    BindingDB: Ki=550nM
    5158 2ole:A (2.4) BS01 KR2 3.4.14.5 GO:0001618 ... P27487 17331715 MOAD: Ki=56.2nM
    PDBbind: -logKd/Ki=7.25, Ki=56.2nM
    BindingDB: IC50=70nM
    5159 2on3:A (3.0) BS01 XAP 4.1.1.17 GO:0001822 ... P11926 17407445 PDBbind: -logKd/Ki=9.00, Ki=1.0nM
    5160 2on3:B (3.0) BS01 XAP 4.1.1.17 GO:0001822 ... P11926 17407445 PDBbind: -logKd/Ki=9.00, Ki=1.0nM
    5161 2on6:A (2.503) BS01 IMH 2.4.2.1 GO:0000255 ... P00491 17407325 MOAD: Ki=172nM
    PDBbind: -logKd/Ki=6.76, Ki=172nM
    5162 2onb:A (2.7) BS01 7PA 2.1.1.45 GO:0000900 ... P04818 17297914 PDBbind: -logKd/Ki=5.57, Ki=2.7uM
    BindingDB: Ki=2700nM
    5163 2onc:A (2.55) BS01 SY1 3.4.14.5 GO:0001618 ... P27487 17441705 PDBbind: -logKd/Ki=7.89, IC50=13nM
    BindingDB: IC50=13nM
    5164 2onc:A (2.55) BS02 SY1 3.4.14.5 GO:0001618 ... P27487 17441705 PDBbind: -logKd/Ki=7.89, IC50=13nM
    BindingDB: IC50=13nM
    5165 2ony:A (2.6) BS02 TMJ 2.1.1.28 GO:0004603 ... P11086 17845018 PDBbind: -logKd/Ki=6.68, Ki=210nM
    BindingDB: Ki=210nM
    5166 2onz:A (2.8) BS02 TMJ 2.1.1.28 GO:0004603 ... P11086 17845018 PDBbind: -logKd/Ki=8.89, Ki=1.3nM
    BindingDB: Ki=210nM
    5167 2oo8:X (2.2) BS01 RAJ 2.7.10.1 GO:0004672 ... Q02763 17350837 MOAD: ic50=1nM
    PDBbind: -logKd/Ki=9.00, IC50=1nM
    BindingDB: IC50=1nM
    5168 2ooh:B (1.85) BS01 OX3 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 17526494 MOAD: ic50=1.3uM
    PDBbind: -logKd/Ki=5.89, IC50=1.3uM
    BindingDB: IC50=1300nM
    5169 2ooh:C (1.85) BS01 OX3 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 17526494 MOAD: ic50=1.3uM
    PDBbind: -logKd/Ki=5.89, IC50=1.3uM
    BindingDB: IC50=1300nM
    5170 2ooh:C (1.85) BS02 OX3 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 17526494 MOAD: ic50=1.3uM
    PDBbind: -logKd/Ki=5.89, IC50=1.3uM
    BindingDB: IC50=1300nM
    5171 2ooz:A (1.8) BS01 OX5 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 17526494 MOAD: ic50=7uM
    PDBbind: -logKd/Ki=5.15, IC50=7uM
    BindingDB: IC50=7000nM
    5172 2ooz:B (1.8) BS01 OX5 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 17526494 MOAD: ic50=7uM
    PDBbind: -logKd/Ki=5.15, IC50=7uM
    BindingDB: IC50=7000nM
    5173 2ooz:B (1.8) BS02 OX5 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 17526494 MOAD: ic50=7uM
    PDBbind: -logKd/Ki=5.15, IC50=7uM
    BindingDB: IC50=7000nM
    5174 2op3:A (1.6) BS01 TF5 3.4.22.27 GO:0006508 ... P25774 17469812 PDBbind: -logKd/Ki=6.31, Ki=0.49uM
    5175 2op9:A (1.8) BS01 WR1 2.1.1.-
    2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0C6X7 17605471 PDBbind: -logKd/Ki=5.66, Ki=2.2uM
    BindingDB: Ki=2200nM
    5176 2op9:B (1.8) BS01 WR1 2.1.1.-
    2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0C6X7 17605471 PDBbind: -logKd/Ki=5.66, Ki=2.2uM
    BindingDB: Ki=2200nM
    5177 2opb:A (2.8) BS01 F21 2.1.1.28 GO:0004603 ... P11086 17845018 PDBbind: -logKd/Ki=8.74, Ki=1.8nM
    BindingDB: Ki=1200nM
    5178 2oph:A (2.4) BS01 277 3.4.14.5 GO:0001618 ... P27487 17350841 MOAD: ic50=0.016uM
    PDBbind: -logKd/Ki=7.80, IC50=16nM
    BindingDB: IC50=16nM
    5179 2opy:A (2.8) BS02 CO9 2.3.2.27 N/A P98170 17336535 PDBbind: -logKd/Ki=4.52, Kd=30uM
    5180 2oqi:B (2.8) BS01 GGO 3.4.14.5 GO:0001618 ... P27487 17367123 PDBbind: -logKd/Ki=8.49, Ki=3.2nM
    BindingDB: Ki=3.2nM
    5181 2oqv:A (2.8) BS01 MA9 3.4.14.5 GO:0001618 ... P27487 17367123 PDBbind: -logKd/Ki=8.40, Ki=4nM
    BindingDB: Ki=4.0nM
    5182 2or4:A (1.62) BS04 QUS 3.4.17.21 GO:0004180 ... Q04609 17567119 MOAD: ic50=9.5uM
    PDBbind: -logKd/Ki=5.02, IC50=9.5uM
    5183 2ork:B (1.89) BS04 IPD ? N/A P35247 17417879 MOAD: ic50=1.4mM
    PDBbind: -logKd/Ki=2.85, IC50=1.4mM
    5184 2os9:A (1.7) BS04 INS ? N/A P35247 17417879 PDBbind: -logKd/Ki=2.24, IC50=5.7mM
    5185 2osc:A (2.8) BS01 MUH 2.7.10.1 GO:0004672 ... Q02763 17350837 PDBbind: -logKd/Ki=7.77, IC50=17nM
    BindingDB: IC50=17nM
    5186 2osf:A (1.6) BS02 TH0 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 18266323 MOAD: Ki=148uM
    PDBbind: -logKd/Ki=3.83, Ki=148uM
    5187 2osm:A (1.6) BS02 HTS 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 18266323 MOAD: Ki=1.05uM
    PDBbind: -logKd/Ki=6.20, Ki=0.631uM
    5188 2ot1:A (2.05) BS01 N3P 4.1.2.13 GO:0004332 ... P00883 17329259 MOAD: Ki~0.1mM
    PDBbind: -logKd/Ki=4.00, Ki=0.1mM
    5189 2otj:1 (2.9) BS01 rna ? GO:0003723 ... P32410 17321546 PDBbind: Kd=2nM
    5190 2otj:2 (2.9) BS01 rna ? GO:0003735 ... P22452 17321546 PDBbind: Kd=2nM
    5191 2otj:3 (2.9) BS01 rna ? GO:0000049 ... P32411 17321546 PDBbind: Kd=2nM
    5192 2otj:A (2.9) BS01 rna ? GO:0002181 ... P20276 17321546 PDBbind: Kd=2nM
    5193 2otj:B (2.9) BS01 rna ? GO:0003723 ... P20279 17321546 PDBbind: Kd=2nM
    5194 2otj:C (2.9) BS01 rna ? GO:0003723 ... P12735 17321546 PDBbind: Kd=2nM
    5195 2otj:D (2.9) BS01 rna ? GO:0000049 ... P14124 17321546 PDBbind: Kd=2nM
    5196 2otj:D (2.9) BS02 rna ? GO:0000049 ... P14124 17321546 PDBbind: Kd=2nM
    5197 2otj:E (2.9) BS01 rna ? GO:0002181 ... P14135 17321546 PDBbind: Kd=2nM
    5198 2otj:F (2.9) BS01 rna ? GO:0001682 ... P12743 17321546 PDBbind: Kd=2nM
    5199 2otj:H (2.9) BS01 rna ? GO:0000027 ... P60617 17321546 PDBbind: Kd=2nM
    5200 2otj:I (2.9) BS01 rna ? GO:0003735 ... P14122 17321546 PDBbind: Kd=2nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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