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BioLiP
Download all results in tab-seperated text for 24809 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    24801 8abp:A (1.49) BS01 GLA ? GO:0015407 ... P02924 2069949 MOAD: Kd=0.01uM
    PDBbind: -logKd/Ki=8.00, Kd=0.010uM
    24802 8cpa:A (2.0) BS02 AGF 3.4.17.1 GO:0004181 ... P00730 1868092 MOAD: Ki=710pM
    PDBbind: -logKd/Ki=9.15, Ki=710pM
    24803 8gpb:A (2.2) BS02 AMP 2.4.1.1 GO:0000166 ... P00489 1900534 MOAD: Kd=250uM
    PDBbind: -logKd/Ki=3.60, Kd=0.25mM
    24804 8gpb:A (2.2) BS03 AMP 2.4.1.1 GO:0000166 ... P00489 1900534 MOAD: Kd=250uM
    PDBbind: -logKd/Ki=3.60, Kd=0.25mM
    24805 966c:A (1.9) BS06 RS2 3.4.24.7 GO:0004222 ... P03956 10074939 MOAD: Ki=23nM
    PDBbind: -logKd/Ki=7.64, Ki=23nM
    BindingDB: Ki=23nM
    24806 9abp:A (1.97) BS01 GLA ? GO:0015407 ... P02924 2204627 MOAD: Kd=0.01uM
    PDBbind: -logKd/Ki=8.00, Kd=0.01uM
    24807 9hvp:A (2.8) BS01 0E9 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P12497 2200122 PDBbind: -logKd/Ki=8.35, Ki=4.5nM
    24808 9hvp:B (2.8) BS01 0E9 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P12497 2200122 PDBbind: -logKd/Ki=8.35, Ki=4.5nM
    24809 9icd:A (2.5) BS01 NAP 1.1.1.42 GO:0000287 ... P08200 1888729 MOAD: Kd=125uM
    PDBbind: -logKd/Ki=3.90, Kd=125uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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