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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 24809 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2201 1pr1:A (2.3) BS02 FMB 2.4.2.1 GO:0003824 ... P0ABP9 12937174 MOAD: Ki=5uM
    PDBbind: -logKd/Ki=5.30, Ki=5uM
    2202 1pr5:A (2.5) BS02 TBN 2.4.2.1 GO:0003824 ... P0ABP9 12937174 MOAD: Ki=120uM
    PDBbind: -logKd/Ki=3.92, Ki=120uM
    2203 1pro:A (1.8) BS01 A88 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P12499 8558507 MOAD: Ki=5pM
    PDBbind: -logKd/Ki=11.30, Ki=5pM
    2204 1pro:B (1.8) BS01 A88 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P12499 8558507 PDBbind: -logKd/Ki=11.30, Ki=5pM
    2205 1ps3:A (1.8) BS02 KIF 3.2.1.114 GO:0000139 ... Q24451 14636047 MOAD: Ki=5.2mM
    PDBbind: -logKd/Ki=2.28, Ki=5.2mM
    2206 1pu7:A (1.93) BS01 39A ? GO:0003824 ... O25323 14517230 MOAD: Ki=0.8mM
    PDBbind: -logKd/Ki=3.10, Ki=0.8mM
    2207 1pu8:A (2.13) BS01 EA1 ? GO:0003824 ... O25323 14517230 MOAD: Ki=0.8mM
    PDBbind: -logKd/Ki=3.10, Ki=0.8mM
    2208 1puf:A (1.9) BS01 dna ? GO:0000981 ... P09631 12923056 PDBbind: Kd=0.23uM
    2209 1puf:A (1.9) BS02 dna ? GO:0000981 ... P09631 12923056 PDBbind: Kd=0.23uM
    2210 1puf:B (1.9) BS01 dna ? GO:0000981 ... P40424 12923056 PDBbind: Kd=0.23uM
    2211 1puf:B (1.9) BS02 dna ? GO:0000981 ... P40424 12923056 PDBbind: Kd=0.23uM
    2212 1pun:A (-1.00) BS02 8OG 3.6.1.55 GO:0000287 ... P08337 12939141 PDBbind: -logKd/Ki=7.28, Kd=52nM
    2213 1puq:A (-1.00) BS02 8OG 3.6.1.55 GO:0000287 ... P08337 12939141 PDBbind: -logKd/Ki=7.28, Kd=52nM
    2214 1pus:A (-1.00) BS02 8OG 3.6.1.55 GO:0000287 ... P08337 12939141 PDBbind: -logKd/Ki=7.28, Kd=52nM
    2215 1pvn:A (2.0) BS01 MZP 1.1.1.205 GO:0003824 ... P50097 12549902 MOAD: Ki=0.15nM
    PDBbind: -logKd/Ki=9.82, Ki=0.15nM
    2216 1pvn:B (2.0) BS01 MZP 1.1.1.205 GO:0003824 ... P50097 12549902 MOAD: Ki=0.15nM
    PDBbind: -logKd/Ki=9.82, Ki=0.15nM
    2217 1pwp:A (2.9) BS02 NSC 3.4.24.83 GO:0003824 ... P15917 14718925 PDBbind: -logKd/Ki=6.30, Ki=0.5uM
    BindingDB: Ki=500nM, IC50=3200nM
    2218 1pwq:A (3.52) BS02 SD2 3.4.24.83 GO:0003824 ... P15917 14718924 PDBbind: -logKd/Ki=4.96, Ki=11uM
    2219 1pwu:A (2.7) BS02 GM6 3.4.24.83 GO:0003824 ... P15917 14718924 PDBbind: -logKd/Ki=5.68, Ki=2.1uM
    2220 1pwy:E (2.8) BS01 AC2 2.4.2.1 GO:0000255 ... P00491 12914786 PDBbind: -logKd/Ki=4.05, Ki=90uM
    BindingDB: Ki=180000nM
    2221 1px4:A (1.6) BS03 IPT 3.2.1.23 GO:0000287 ... P00722 14621996 MOAD: Ki=0.59mM
    PDBbind: -logKd/Ki=3.23, Ki=0.59mM
    BindingDB: Ki=7.6e+4nM
    2222 1px4:D (1.6) BS03 IPT 3.2.1.23 GO:0000287 ... P00722 14621996 MOAD: Ki=0.59mM
    PDBbind: -logKd/Ki=3.23, Ki=0.59mM
    BindingDB: Ki=7.6e+4nM
    2223 1pxh:A (2.15) BS01 SNA 3.1.3.48 GO:0004725 ... P18031 12547827 PDBbind: -logKd/Ki=8.74, Ki=1.8nM
    2224 1pxi:A (1.95) BS01 CK1 2.7.11.22 GO:0000082 ... P24941 12679018 PDBbind: -logKd/Ki=4.77, IC50=17uM
    2225 1pxj:A (2.3) BS01 CK2 2.7.11.22 GO:0000082 ... P24941 12679018 PDBbind: -logKd/Ki=4.89, IC50=13uM
    BindingDB: Ki=6500nM, Kd=30300nM, IC50=6.50e+3nM, kon=8.22E+04M-1-s-1, koff=1.42E+00s-1
    2226 1pxk:A (2.8) BS01 CK3 2.7.11.22 GO:0000082 ... P24941 12679018 PDBbind: -logKd/Ki=5.66, IC50=2.2uM
    2227 1pxl:A (2.5) BS01 CK4 2.7.11.22 GO:0000082 ... P24941 12679018 PDBbind: -logKd/Ki=6.05, IC50=0.9uM
    BindingDB: IC50=2.9e+2nM, Ki=290nM
    2228 1pxm:A (2.53) BS01 CK5 2.7.11.22 GO:0000082 ... P24941 15027857 PDBbind: -logKd/Ki=7.22, Ki=0.06uM
    BindingDB: Ki=60nM
    2229 1pxn:A (2.5) BS01 CK6 2.7.11.22 GO:0000082 ... P24941 15027857 MOAD: Ki=0.07uM
    PDBbind: -logKd/Ki=7.15, Ki=0.07uM
    BindingDB: Ki=70nM
    2230 1pxo:A (1.96) BS01 CK7 2.7.11.22 GO:0000082 ... P24941 15027857 MOAD: Ki=2nM
    PDBbind: -logKd/Ki=8.70, Ki=2.0nM
    BindingDB: IC50=10.0nM, Ki=2nM
    2231 1pxp:A (2.3) BS01 CK8 2.7.11.22 GO:0000082 ... P24941 15027857 MOAD: Ki=0.22uM
    PDBbind: -logKd/Ki=6.66, Ki=0.22uM
    BindingDB: IC50=2.2e+2nM, Ki=220nM
    2232 1py2:A (2.8) BS01 FRH ? GO:0002250 ... P60568 14664558 PDBbind: -logKd/Ki=7.22, IC50=0.06uM
    2233 1py5:A (2.3) BS01 PY1 2.7.11.30 GO:0004672 ... P36897 15177479 MOAD: ic50=51nM
    PDBbind: -logKd/Ki=7.29, IC50=51nM
    BindingDB: IC50=51nM, Kd=5nM
    2234 1pye:A (2.0) BS01 PM1 2.7.11.22 GO:0000082 ... P24941 14749470 MOAD: Ki=386nM
    PDBbind: -logKd/Ki=6.41, Ki=386nM
    BindingDB: IC50=324nM
    2235 1pyg:A (2.87) BS01 AMP 2.4.1.1 GO:0000166 ... P00489 1962195 PDBbind: -logKd/Ki=5.52, Kd=3uM
    2236 1pyg:A (2.87) BS03 AMP 2.4.1.1 GO:0000166 ... P00489 1962195 PDBbind: -logKd/Ki=5.52, Kd=3uM
    2237 1pyg:B (2.87) BS01 AMP 2.4.1.1 GO:0000166 ... P00489 1962195 PDBbind: -logKd/Ki=5.52, Kd=3uM
    2238 1pyg:B (2.87) BS02 AMP 2.4.1.1 GO:0000166 ... P00489 1962195 PDBbind: -logKd/Ki=5.52, Kd=3uM
    2239 1pyn:A (2.2) BS01 941 3.1.3.48 GO:0004725 ... P18031 12951078 MOAD: Ki=3.2uM
    PDBbind: -logKd/Ki=5.49, Ki=3.2uM
    BindingDB: Ki=3200nM
    2240 1pzi:D (1.99) BS01 1DM ? GO:0005576 ... P32890 14980603 MOAD: Kd=60uM
    PDBbind: -logKd/Ki=4.22, Kd=60uM
    2241 1pzi:E (1.99) BS01 1DM ? GO:0005576 ... P32890 14980603 MOAD: Kd=60uM
    PDBbind: -logKd/Ki=4.22, Kd=60uM
    2242 1pzj:D (1.46) BS01 15B ? GO:0005576 ... Q57193 14980603 MOAD: ic50=0.32mM
    PDBbind: -logKd/Ki=3.49, IC50=0.32mM
    2243 1pzj:D (1.46) BS02 15B ? GO:0005576 ... Q57193 14980603 MOAD: ic50=0.32mM
    PDBbind: -logKd/Ki=3.49, IC50=0.32mM
    2244 1pzo:A (1.9) BS01 CBT 3.5.2.6 GO:0005515 ... P62593 15037085 MOAD: Ki=460uM
    PDBbind: -logKd/Ki=3.32, Ki=480uM
    2245 1pzo:A (1.9) BS02 CBT 3.5.2.6 GO:0005515 ... P62593 15037085 MOAD: Ki=460uM
    PDBbind: -logKd/Ki=3.32, Ki=480uM
    2246 1pzp:A (1.45) BS01 FTA 3.5.2.6 GO:0005515 ... P62593 15037085 MOAD: Ki=480uM
    PDBbind: -logKd/Ki=3.31, Ki=490uM
    2247 1pzp:A (1.45) BS02 FTA 3.5.2.6 GO:0005515 ... P62593 15037085 MOAD: Ki=480uM
    PDBbind: -logKd/Ki=3.31, Ki=490uM
    2248 1q0b:A (1.9) BS02 NAT ? GO:0003777 ... P52732 14672662 MOAD: ic50=6.7uM
    PDBbind: -logKd/Ki=5.17, IC50=6.7uM
    BindingDB: IC50=10000nM
    2249 1q1g:A (2.02) BS01 MTI 2.4.2.1
    2.4.2.44    		 GO:0003824 ... Q8I3X4 14982926 MOAD: Kd=2.7nM
    PDBbind: -logKd/Ki=8.57, Kd=2.7nM
    2250 1q1g:B (2.02) BS01 MTI 2.4.2.1
    2.4.2.44    		 GO:0003824 ... Q8I3X4 14982926 MOAD: Kd=2.7nM
    PDBbind: -logKd/Ki=8.57, Kd=2.7nM
    2251 1q1g:B (2.02) BS02 MTI 2.4.2.1
    2.4.2.44    		 GO:0003824 ... Q8I3X4 14982926 MOAD: Kd=2.7nM
    PDBbind: -logKd/Ki=8.57, Kd=2.7nM
    2252 1q1m:A (2.6) BS01 234 3.1.3.48 GO:0004725 ... P18031 13678400 PDBbind: -logKd/Ki=5.16, Ki=6.9uM
    BindingDB: Ki=6900nM, IC50=110000nM
    2253 1q1y:A (1.9) BS02 BB2 3.5.1.88 GO:0006412 ... P68826 15382235 PDBbind: -logKd/Ki=7.70, IC50=0.02uM
    BindingDB: IC50=<5nM
    2254 1q3d:A (2.2) BS01 STU 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 14529625 MOAD: ic50=15nM
    PDBbind: -logKd/Ki=7.82, IC50=15nM
    2255 1q3d:B (2.2) BS01 STU 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 14529625 MOAD: ic50=15nM
    PDBbind: -logKd/Ki=7.82, IC50=15nM
    2256 1q3w:B (2.3) BS01 ATU 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 14529625 MOAD: ic50=4nM
    PDBbind: -logKd/Ki=8.40, IC50=4nM
    BindingDB: IC50=4nM
    2257 1q41:A (2.1) BS01 IXM 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 14529625 MOAD: ic50=22nM
    PDBbind: -logKd/Ki=7.66, IC50=22nM
    BindingDB: IC50=200nM
    2258 1q4l:A (2.77) BS01 679 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 14529625 PDBbind: -logKd/Ki=7.40, Kd=40nM
    BindingDB: IC50=76nM
    2259 1q4w:A (1.93) BS02 DQU 2.4.2.29 GO:0002099 ... P28720 15050823 MOAD: Ki=0.35uM
    PDBbind: -logKd/Ki=6.46, Ki=0.35uM
    2260 1q4x:A (2.8) BS01 G24 ? GO:0003677 ... P10828 14673100 PDBbind: -logKd/Ki=9.48, Kd=0.33nM
    2261 1q54:A (1.93) BS03 BHI 5.3.3.2 GO:0000287 ... Q46822 12630859 MOAD: Ki=1.4uM
    PDBbind: -logKd/Ki=5.85, Ki=1.4uM
    2262 1q5k:A (1.94) BS01 TMU 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 12928438 MOAD: Ki=38nM
    PDBbind: -logKd/Ki=7.42, Ki=38nM
    BindingDB: IC50=104nM, Ki=38nM
    2263 1q63:A (1.85) BS02 AIQ 2.4.2.29 GO:0002099 ... P28720 15050823 MOAD: Ki=1.4uM
    PDBbind: -logKd/Ki=5.85, Ki=1.4uM
    2264 1q65:A (2.1) BS02 BHB 2.4.2.29 GO:0002099 ... P28720 15050823 MOAD: Ki=3.5uM
    PDBbind: -logKd/Ki=5.46, Ki=3.5uM
    2265 1q66:A (1.75) BS02 KMB 2.4.2.29 GO:0002099 ... P28720 15050823 MOAD: Ki=1.7uM
    PDBbind: -logKd/Ki=5.77, Ki=1.7uM
    2266 1q6j:A (2.2) BS01 335 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=0.016uM
    PDBbind: -logKd/Ki=7.80, IC50=0.016uM
    BindingDB: IC50=16nM
    2267 1q6k:A (2.1) BS01 TCO 3.4.22.38 GO:0006508 ... P43235 14684342 MOAD: ic50=26nM
    PDBbind: -logKd/Ki=7.59, IC50=26nM
    BindingDB: IC50=26nM
    2268 1q6m:A (2.2) BS01 P27 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=0.013uM
    PDBbind: -logKd/Ki=7.89, IC50=0.013uM
    BindingDB: IC50=120nM
    2269 1q6n:A (2.1) BS01 P90 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=0.023uM
    PDBbind: -logKd/Ki=7.64, IC50=0.023uM
    2270 1q6n:A (2.1) BS02 P90 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=0.023uM
    PDBbind: -logKd/Ki=7.64, IC50=0.023uM
    2271 1q6p:A (2.3) BS01 213 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=3nM
    PDBbind: -logKd/Ki=8.52, IC50=3nM
    BindingDB: IC50=3nM
    2272 1q6p:A (2.3) BS02 213 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=3nM
    PDBbind: -logKd/Ki=8.52, IC50=3nM
    BindingDB: IC50=3nM
    2273 1q6s:A (2.2) BS01 214 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=12nM
    PDBbind: -logKd/Ki=7.92, IC50=12nM
    BindingDB: IC50=220nM
    2274 1q6s:A (2.2) BS02 214 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=12nM
    PDBbind: -logKd/Ki=7.92, IC50=12nM
    BindingDB: IC50=220nM
    2275 1q6t:A (2.3) BS01 600 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=5nM
    PDBbind: -logKd/Ki=8.30, IC50=5nM
    BindingDB: IC50=5340nM
    2276 1q6t:A (2.3) BS02 600 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=5nM
    PDBbind: -logKd/Ki=8.30, IC50=5nM
    BindingDB: IC50=5340nM
    2277 1q72:H (1.7) BS01 COC N/A N/A N/A 15885702 MOAD: Kd=0.0000123M
    PDBbind: -logKd/Ki=6.85, Kd=0.14uM
    2278 1q72:L (1.7) BS01 COC N/A N/A N/A 15885702 PDBbind: -logKd/Ki=6.85, Kd=0.14uM
    2279 1q7a:A (1.6) BS02 OPB 3.1.1.4 GO:0004623 ... P59071 15544328 MOAD: Kd=0.000000064M
    PDBbind: -logKd/Ki=7.19, Kd=64nM
    2280 1q83:A (2.65) BS01 TZ5 3.1.1.7 GO:0004104 ... P21836 14757816 PDBbind: -logKd/Ki=12.39, Ki=410fM
    BindingDB: Ki=0.410nM, Kd=0.00041nM
    2281 1q84:A (2.45) BS01 TZ4 3.1.1.7 GO:0004104 ... P21836 14757816 MOAD: Ki=8900fM
    PDBbind: -logKd/Ki=11.05, Ki=8900fM
    2282 1q8t:A (2.0) BS02 Y27 2.7.11.11 GO:0001669 ... P00517 14656443 MOAD: Kd=17.5uM
    PDBbind: -logKd/Ki=4.76, Kd=17.5uM
    BindingDB: IC50=42000nM
    2283 1q8u:A (1.9) BS02 H52 2.7.11.11 GO:0001669 ... P00517 14656443 MOAD: Kd=1.1uM
    PDBbind: -logKd/Ki=5.96, Kd=1.1uM
    BindingDB: IC50=394nM
    2284 1q8u:A (1.9) BS03 H52 2.7.11.11 GO:0001669 ... P00517 14656443 MOAD: Kd=1.1uM
    PDBbind: -logKd/Ki=5.96, Kd=1.1uM
    BindingDB: IC50=394nM
    2285 1q8w:A (2.2) BS02 M77 2.7.11.11 GO:0001669 ... P00517 14656443 MOAD: Kd=5.7uM
    PDBbind: -logKd/Ki=5.24, Kd=5.7uM
    BindingDB: IC50=1494nM
    2286 1q91:A (1.6) BS03 DPB 3.1.3.- GO:0008253 ... Q9NPB1 15044615 MOAD: Ki=70uM
    PDBbind: -logKd/Ki=4.15, Ki=70uM
    2287 1q95:A (2.46) BS01 PAL 2.1.3.2 GO:0004070 ... P0A786 15157075 MOAD: Ki=27nM
    PDBbind: -logKd/Ki=7.57, Ki=27nM
    2288 1q95:B (2.46) BS01 PAL 2.1.3.2 GO:0004070 ... P0A786 15157075 MOAD: Ki=27nM
    PDBbind: -logKd/Ki=7.57, Ki=27nM
    2289 1q95:B (2.46) BS02 PAL 2.1.3.2 GO:0004070 ... P0A786 15157075 MOAD: Ki=27nM
    PDBbind: -logKd/Ki=7.57, Ki=27nM
    2290 1q9d:A (2.35) BS06 OI1 3.1.3.11 GO:0005737 ... P00636 14530289 MOAD: ic50=1.87uM
    PDBbind: -logKd/Ki=4.60, Kd=25uM
    2291 1q9d:A (2.35) BS07 OI1 3.1.3.11 GO:0005737 ... P00636 14530289 MOAD: ic50=1.87uM
    PDBbind: -logKd/Ki=4.60, Kd=25uM
    2292 1q9d:B (2.35) BS01 OI1 3.1.3.11 GO:0005737 ... P00636 14530289 MOAD: ic50=1.87uM
    PDBbind: -logKd/Ki=4.60, Kd=25uM
    2293 1q9d:B (2.35) BS07 OI1 3.1.3.11 GO:0005737 ... P00636 14530289 MOAD: ic50=1.87uM
    PDBbind: -logKd/Ki=4.60, Kd=25uM
    2294 1q9m:A (2.3) BS02 ROL 3.1.4.53 GO:0004114 ... Q08499 12842049 MOAD: ic50=0.33uM
    PDBbind: -logKd/Ki=6.48, IC50=0.33uM
    2295 1q9x:A (2.69) BS01 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 15057282 PDBbind: Kd=0.64uM
    2296 1q9x:A (2.69) BS02 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 15057282 PDBbind: Kd=0.64uM
    2297 1q9x:A (2.69) BS03 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 15057282 PDBbind: Kd=0.64uM
    2298 1q9x:B (2.69) BS01 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 15057282 PDBbind: Kd=0.64uM
    2299 1q9x:B (2.69) BS02 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 15057282 PDBbind: Kd=0.64uM
    2300 1q9x:C (2.69) BS01 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 15057282 PDBbind: Kd=0.64uM
    2301 1q9x:C (2.69) BS02 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 15057282 PDBbind: Kd=0.64uM
    2302 1q9x:D (2.69) BS01 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 15057282 PDBbind: Kd=0.64uM
    2303 1q9x:D (2.69) BS02 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 15057282 PDBbind: Kd=0.64uM
    2304 1q9y:A (2.8) BS01 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 15057282 PDBbind: Kd=20uM
    2305 1q9y:A (2.8) BS02 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 15057282 PDBbind: Kd=20uM
    2306 1qan:A (2.4) BS01 SAH 2.1.1.184 GO:0000154 ... P13956 10366505 MOAD: Ki=33uM
    PDBbind: -logKd/Ki=4.48, Ki=33uM
    2307 1qaq:A (2.8) BS01 SFG 2.1.1.184 GO:0000154 ... P13956 10366505 PDBbind: -logKd/Ki=4.74, Ki=18uM
    2308 1qaw:A (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 10369778 MOAD: Kd=7.5uM
    PDBbind: -logKd/Ki=5.12, Kd=7.5uM
    2309 1qaw:A (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 10369778 MOAD: Kd=7.5uM
    PDBbind: -logKd/Ki=5.12, Kd=7.5uM
    2310 1qaw:B (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 10369778 MOAD: Kd=7.5uM
    PDBbind: -logKd/Ki=5.12, Kd=7.5uM
    2311 1qaw:B (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 10369778 MOAD: Kd=7.5uM
    PDBbind: -logKd/Ki=5.12, Kd=7.5uM
    2312 1qaw:K (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 10369778 MOAD: Kd=7.5uM
    PDBbind: -logKd/Ki=5.12, Kd=7.5uM
    2313 1qaw:K (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 10369778 MOAD: Kd=7.5uM
    PDBbind: -logKd/Ki=5.12, Kd=7.5uM
    2314 1qb1:A (1.8) BS02 974 3.4.21.4 GO:0004175 ... P00760 10417407 MOAD: Ki=170nM
    PDBbind: -logKd/Ki=6.77, Ki=170nM
    2315 1qb6:A (1.8) BS02 623 3.4.21.4 GO:0004175 ... P00760 10417407 MOAD: Ki=870nM
    PDBbind: -logKd/Ki=6.06, Ki=870nM
    2316 1qb9:A (1.8) BS03 806 3.4.21.4 GO:0004175 ... P00760 10417407 MOAD: Ki=36nM
    PDBbind: -logKd/Ki=7.44, Ki=36nM
    BindingDB: Ki=36nM
    2317 1qbn:A (1.8) BS03 688 3.4.21.4 GO:0004175 ... P00760 10417407 MOAD: Ki=1400nM
    PDBbind: -logKd/Ki=5.85, Ki=1400nM
    2318 1qbo:A (1.8) BS03 711 3.4.21.4 GO:0004175 ... P00760 10417407 MOAD: Ki=18nM
    PDBbind: -logKd/Ki=7.74, Ki=18nM
    2319 1qbq:B (2.4) BS03 HFP 2.5.1.58 GO:0003824 ... Q02293 9843427 MOAD: Ki=5nM
    PDBbind: -logKd/Ki=8.30, Ki=5nM
    2320 1qbr:A (1.8) BS01 XV6 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04585 9003516 MOAD: Ki=0.027nM
    PDBbind: -logKd/Ki=10.57, Ki=0.027nM
    2321 1qbr:B (1.8) BS01 XV6 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04585 9003516 PDBbind: -logKd/Ki=10.57, Ki=0.027nM
    2322 1qbs:A (1.8) BS01 DMP 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04585 8784449 MOAD: Ki=0.34nM
    PDBbind: -logKd/Ki=9.47, Ki=0.34nM
    2323 1qbs:B (1.8) BS01 DMP 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04585 8784449 PDBbind: -logKd/Ki=9.47, Ki=0.34nM
    2324 1qbt:A (2.1) BS01 146 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04585 9003516 PDBbind: -logKd/Ki=10.62, Ki=0.024nM
    2325 1qbt:B (2.1) BS01 146 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04585 9003516 MOAD: Ki=0.024nM
    PDBbind: -logKd/Ki=10.62, Ki=0.024nM
    2326 1qbu:A (1.8) BS01 846 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04585 9003516 PDBbind: -logKd/Ki=10.24, Ki=0.058nM
    2327 1qbu:B (1.8) BS01 846 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04585 9003516 MOAD: Ki=0.058nM
    PDBbind: -logKd/Ki=10.24, Ki=0.058nM
    2328 1qbv:H (1.8) BS03 PPX 3.4.21.5 GO:0004252 ... P00734 9622548 MOAD: Ki=4100nM
    PDBbind: -logKd/Ki=5.39, Ki=4100nM
    BindingDB: Ki=4100nM
    2329 1qca:A (2.2) BS02 FUA 2.3.1.28 GO:0008811 ... P00484 7500366 MOAD: Ki=5.4uM
    PDBbind: -logKd/Ki=5.27, Ki=5.4uM
    2330 1qcp:A (1.8) BS02 RWJ 3.4.21.4 GO:0004175 ... P00760 10531473 PDBbind: -logKd/Ki=7.52, Ki=30nM
    2331 1qf0:A (2.2) BS06 TI2 3.4.24.27 GO:0004222 ... P00800 10504225 MOAD: Ki=42nM
    PDBbind: -logKd/Ki=7.38, Ki=42nM
    2332 1qf1:A (2.0) BS06 TI1 3.4.24.27 GO:0004222 ... P00800 10504225 MOAD: Ki=48nM
    PDBbind: -logKd/Ki=7.32, Ki=48nM
    2333 1qf2:A (2.06) BS06 TI3 3.4.24.27 GO:0004222 ... P00800 10504225 MOAD: Ki=1200nM
    PDBbind: -logKd/Ki=5.92, Ki=1200nM
    2334 1qf4:A (2.2) BS04 RPD 6.3.4.4 GO:0000166 ... P0A7D4 10556888 MOAD: ic50=0.665uM
    PDBbind: -logKd/Ki=6.18, IC50=0.665uM
    2335 1qf5:A (2.0) BS04 RPL 6.3.4.4 GO:0000166 ... P0A7D4 10556888 MOAD: ic50=0.043uM
    PDBbind: -logKd/Ki=7.37, IC50=0.043uM
    2336 1qfq:B (-1.00) BS01 rna ? N/A P03045 10759866 PDBbind: Kd=20nM
    2337 1qfs:A (2.0) BS01 ZPR 3.4.21.26 GO:0004252 ... P23687 9695945 PDBbind: -logKd/Ki=9.48, IC50=0.33nM
    BindingDB: IC50=0.33nM
    2338 1qft:A (1.25) BS01 HSM ? GO:0005576 ... O77421 10360182 MOAD: Kd=1.7nM
    PDBbind: -logKd/Ki=8.77, Kd=1.7nM
    2339 1qft:A (1.25) BS02 HSM ? GO:0005576 ... O77421 10360182 MOAD: Kd=1.7nM
    PDBbind: -logKd/Ki=8.77, Kd=1.7nM
    2340 1qhc:A (1.7) BS01 PUA 4.6.1.18 GO:0003676 ... P61823 10441122 MOAD: Ki=27nM
    PDBbind: -logKd/Ki=7.57, Ki=27nM
    2341 1qhr:B (2.2) BS02 157 3.4.21.5 GO:0004252 ... P00734 10387040 PDBbind: -logKd/Ki=6.89, IC50=130nM
    BindingDB: IC50=130nM
    2342 1qin:A (2.0) BS02 GIP 4.4.1.5 GO:0004462 ... Q04760 10521255 MOAD: Ki=10nM
    PDBbind: -logKd/Ki=8.00, Ki=10nM
    2343 1qin:A (2.0) BS03 GIP 4.4.1.5 GO:0004462 ... Q04760 10521255 MOAD: Ki=10nM
    PDBbind: -logKd/Ki=8.00, Ki=10nM
    2344 1qin:B (2.0) BS01 GIP 4.4.1.5 GO:0004462 ... Q04760 10521255 MOAD: Ki=10nM
    PDBbind: -logKd/Ki=8.00, Ki=10nM
    2345 1qin:B (2.0) BS03 GIP 4.4.1.5 GO:0004462 ... Q04760 10521255 MOAD: Ki=10nM
    PDBbind: -logKd/Ki=8.00, Ki=10nM
    2346 1qj7:B (2.2) BS02 GR1 3.4.21.5 GO:0004252 ... P00734 10387040 PDBbind: -logKd/Ki=8.10, IC50=8nM
    2347 1qji:A (2.14) BS02 PKF 3.4.24.21 GO:0004222 ... P07584 8756323 MOAD: Ki=14uM
    PDBbind: -logKd/Ki=4.85, Ki=14uM
    2348 1qk3:A (1.65) BS01 5GP 2.4.2.22
    2.4.2.8    		 GO:0000166 ... Q26997 10545170 MOAD: Kd=7.1uM
    PDBbind: -logKd/Ki=5.15, Kd=7.1uM
    2349 1qk3:B (1.65) BS01 5GP 2.4.2.22
    2.4.2.8    		 GO:0000166 ... Q26997 10545170 MOAD: Kd=7.1uM
    PDBbind: -logKd/Ki=5.15, Kd=7.1uM
    2350 1qk4:A (1.9) BS01 IMP 2.4.2.22
    2.4.2.8    		 GO:0000166 ... Q26997 10545170 MOAD: Kd=61uM
    PDBbind: -logKd/Ki=4.21, Kd=61uM
    2351 1qkn:A (2.25) BS01 RAL ? N/A Q62986 10469641 PDBbind: -logKd/Ki=8.47, IC50=3.4nM
    2352 1qkt:A (2.2) BS01 EST ? N/A P03372 11278577 MOAD: Kd=0.92nM
    PDBbind: -logKd/Ki=9.04, Kd=0.92nM
    BindingDB: IC50=1.3nM, Kd=0.2nM, EC50=0.75nM, Ki=0.21nM
    2353 1qku:A (3.2) BS01 EST ? N/A P03372 11278577 PDBbind: -logKd/Ki=9.59, Kd=0.26nM
    BindingDB: IC50=1.3nM, Kd=0.2nM, EC50=0.75nM, Ki=0.21nM
    2354 1ql7:A (2.1) BS02 ZEN 3.4.21.4 GO:0004175 ... P00760 11921406 MOAD: Kd=15uM
    PDBbind: -logKd/Ki=5.00, Kd=10uM
    2355 1ql9:A (2.3) BS02 ZEN 3.4.21.4 GO:0004252 ... P00763 12527302 MOAD: Ki=4.45uM
    PDBbind: -logKd/Ki=5.35, Ki=4.45uM
    2356 1qm5:A (2.0) BS01 GLC 2.4.1.1 GO:0004645 ... P00490 10469642 PDBbind: -logKd/Ki=5.82, Ki=1.5uM
    2357 1qm5:A (2.0) BS02 GLC 2.4.1.1 GO:0004645 ... P00490 10469642 PDBbind: -logKd/Ki=5.82, Ki=1.5uM
    2358 1qm5:A (2.0) BS03 GLC 2.4.1.1 GO:0004645 ... P00490 10469642 PDBbind: -logKd/Ki=5.82, Ki=1.5uM
    2359 1qm5:A (2.0) BS04 SGC 2.4.1.1 GO:0004645 ... P00490 10469642 PDBbind: -logKd/Ki=5.82, Ki=1.5uM
    2360 1qm5:A (2.0) BS06 GLC 2.4.1.1 GO:0004645 ... P00490 10469642 PDBbind: -logKd/Ki=5.82, Ki=1.5uM
    2361 1qp0:A (2.9) BS01 dna ? GO:0000976 ... P0ACP7 10438625 PDBbind: Kd=35nM
    2362 1qp4:A (3.0) BS01 dna ? GO:0000976 ... P0ACP7 10438625 PDBbind: Kd=10nM
    2363 1qp7:A (2.9) BS01 dna ? GO:0000976 ... P0ACP7 10438625 PDBbind: Kd=780nM
    2364 1qp9:A (2.8) BS01 dna ? GO:0000981 ... P0CS82 11024163 PDBbind: Kd=37.8nM
    2365 1qp9:A (2.8) BS02 dna ? GO:0000981 ... P0CS82 11024163 PDBbind: Kd=37.8nM
    2366 1qp9:B (2.8) BS01 dna ? GO:0000981 ... P0CS82 11024163 PDBbind: Kd=37.8nM
    2367 1qp9:B (2.8) BS02 dna ? GO:0000981 ... P0CS82 11024163 PDBbind: Kd=37.8nM
    2368 1qp9:C (2.8) BS01 dna ? GO:0000981 ... P0CS82 11024163 PDBbind: Kd=37.8nM
    2369 1qp9:C (2.8) BS02 dna ? GO:0000981 ... P0CS82 11024163 PDBbind: Kd=37.8nM
    2370 1qp9:D (2.8) BS01 dna ? GO:0000981 ... P0CS82 11024163 PDBbind: Kd=37.8nM
    2371 1qp9:D (2.8) BS02 dna ? GO:0000981 ... P0CS82 11024163 PDBbind: Kd=37.8nM
    2372 1qpb:A (2.4) BS03 PYM 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74    		 GO:0000287 ... P06169 10651824 MOAD: Kd=44mM
    PDBbind: -logKd/Ki=1.36, Kd=44mM
    2373 1qpb:B (2.4) BS04 PYM 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74    		 GO:0000287 ... P06169 10651824 MOAD: Kd=44mM
    PDBbind: -logKd/Ki=1.36, Kd=44mM
    2374 1qpe:A (2.0) BS01 PP2 2.7.10.2 GO:0004672 ... P06239 10404594 MOAD: ic50=20nM
    PDBbind: -logKd/Ki=7.70, IC50=20nM
    2375 1qpf:D (2.5) BS01 858 5.2.1.8 GO:0000413 ... P62942 10425089 MOAD: ic50=27nM
    PDBbind: -logKd/Ki=7.57, IC50=27nM
    2376 1qpl:A (2.9) BS01 587 5.2.1.8 GO:0000413 ... P62942 10425089 PDBbind: -logKd/Ki=8.51, IC50=3.1nM
    2377 1qpl:C (2.9) BS01 587 5.2.1.8 GO:0000413 ... P62942 10425089 PDBbind: -logKd/Ki=8.51, IC50=3.1nM
    2378 1qpz:A (2.5) BS01 dna ? GO:0000976 ... P0ACP7 10438625 PDBbind: Kd=2.6nM
    2379 1qq9:A (1.53) BS04 MET 3.4.11.24 GO:0004177 ... P80561 10771423 MOAD: Ki=8.7mM
    PDBbind: -logKd/Ki=2.06, Ki=8.7mM
    2380 1qqa:A (3.0) BS01 dna ? GO:0000976 ... P0ACP7 10438625 PDBbind: Kd=400nM
    2381 1qqb:A (2.7) BS01 dna ? GO:0000976 ... P0ACP7 10438625 PDBbind: Kd=2000nM
    2382 1qs4:A (2.1) BS02 100 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 10557269 MOAD: ic50=2.3uM
    PDBbind: -logKd/Ki=5.64, IC50=2.3uM
    2383 1qti:A (2.5) BS01 GNT 3.1.1.7 GO:0001507 ... P04058 11119642 PDBbind: -logKd/Ki=6.44, IC50=0.36uM
    BindingDB: IC50=1069nM, Ki=1.9e+2nM
    2384 1qtq:A (2.25) BS01 rna 6.1.1.18 GO:0000166 ... P00962 9562563 PDBbind: Ki=1.32uM
    2385 1qvt:A (2.89) BS01 PRL ? GO:0003677 ... P0A0N4 15257299 PDBbind: -logKd/Ki=4.38, Kd=42uM
    2386 1qvu:A (2.96) BS02 PRL ? GO:0003677 ... P0A0N4 15257299 PDBbind: -logKd/Ki=4.46, Kd=35uM
    2387 1qwu:A (2.03) BS02 GUL 3.2.1.114 GO:0000139 ... Q24451 12960159 PDBbind: -logKd/Ki=3.22, Ki=0.6mM
    2388 1qx1:A (1.3) BS02 FMF 3.2.1.114 GO:0000139 ... Q24451 12960159 PDBbind: -logKd/Ki=2.12, Ki=7.5mM
    2389 1qxk:A (2.3) BS01 429 3.1.3.48 GO:0004725 ... P18031 14592481 MOAD: Ki=9uM
    PDBbind: -logKd/Ki=5.05, Ki=9.0uM
    BindingDB: Ki=9000nM, IC50=9000nM
    2390 1qxl:A (2.25) BS02 FR8 3.5.4.4 GO:0004000 ... P56658 15239652 MOAD: Ki=11nM
    PDBbind: -logKd/Ki=7.96, Ki=11nM
    2391 1qxw:A (1.67) BS03 M1C 3.4.11.18 GO:0004177 ... P0A078 14998322 MOAD: ic50=7uM
    PDBbind: -logKd/Ki=5.15, IC50=7uM
    2392 1qxy:A (1.04) BS04 M2C 3.4.11.18 GO:0004177 ... P0A078 14998322 MOAD: ic50=16uM
    PDBbind: -logKd/Ki=4.80, IC50=16uM
    2393 1qxz:A (1.68) BS04 M3C 3.4.11.18 GO:0004177 ... P0A078 14998322 MOAD: ic50=19uM
    PDBbind: -logKd/Ki=4.72, IC50=19uM
    2394 1qy1:A (1.7) BS01 PRZ ? GO:0036094 ... P11588 14871097 MOAD: Kd=0.3uM
    PDBbind: -logKd/Ki=6.52, Kd=0.3uM
    2395 1qy2:A (1.75) BS01 IPZ ? GO:0036094 ... P11589 14871097 MOAD: Kd=1.8uM
    PDBbind: -logKd/Ki=5.74, Kd=1.8uM
    2396 1qyg:H (1.81) BS01 BCG N/A N/A N/A 15885702 PDBbind: -logKd/Ki=6.85, Kd=0.14uM
    2397 1qyg:L (1.81) BS01 BCG N/A N/A N/A 15885702 PDBbind: -logKd/Ki=6.85, Kd=0.14uM
    2398 1qzg:A (1.9) BS01 dna ? GO:0000723 ... O13988 14614509 PDBbind: Kd=480nM
    2399 1qzg:B (1.9) BS01 dna ? GO:0000723 ... O13988 14614509 PDBbind: Kd=480nM
    2400 1r0p:A (1.8) BS01 KSA 2.7.10.1 GO:0004672 ... P08581 14559966 MOAD: Kd=10nM
    PDBbind: -logKd/Ki=8.00, Kd=10nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218