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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 24809 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    21801 6bbu:A (2.08) BS01 D7D 2.7.10.2 GO:0004672 ... P23458 29298069 MOAD: ic50=0.029uM
    PDBbind: -logKd/Ki=7.54, IC50=0.029uM
    BindingDB: IC50=29nM
    21802 6bbv:A (1.8) BS01 D7D 2.7.10.2 GO:0004672 ... O60674 29298069 MOAD: ic50=0.803uM
    PDBbind: -logKd/Ki=6.10, IC50=0.803uM
    BindingDB: IC50=803nM
    21803 6bbx:A (2.2) BS01 D77 ? GO:0046872 ... A0A125SA29 29937405 MOAD: Kd=215nM
    PDBbind: -logKd/Ki=6.67, Kd=215nM
    21804 6bbx:A (2.2) BS02 D77 ? GO:0046872 ... A0A125SA29 29937405 MOAD: Kd=215nM
    PDBbind: -logKd/Ki=6.67, Kd=215nM
    21805 6bbx:B (2.2) BS01 D77 ? GO:0046872 ... A0A125SA29 29937405 PDBbind: -logKd/Ki=6.67, Kd=215nM
    21806 6bbx:B (2.2) BS02 D77 ? GO:0046872 ... A0A125SA29 29937405 PDBbind: -logKd/Ki=6.67, Kd=215nM
    21807 6bc9:A (1.8) BS02 ETS 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 29429876 PDBbind: -logKd/Ki=9.43, Ki=0.37nM
    BindingDB: Ki=9nM, IC50=26.61nM, Kd=0.043000nM
    21808 6bdy:A (1.512) BS01 SFG 2.1.1.13 GO:0008705 ... P13009 29733595 MOAD: Kd=2.04uM
    PDBbind: -logKd/Ki=5.69, Kd=2.04uM
    21809 6beb:A (2.55) BS01 RFV ? GO:0016020 ... P68440 30068608 PDBbind: -logKd/Ki=3.61, Kd=246uM
    21810 6bec:A (2.91) BS01 RBT ? GO:0016020 ... P68440 30068608 PDBbind: -logKd/Ki=4.01, Kd=98uM
    21811 6bec:B (2.91) BS01 RBT ? GO:0016020 ... P68440 30068608 PDBbind: -logKd/Ki=4.01, Kd=98uM
    21812 6bec:C (2.91) BS01 RBT ? GO:0016020 ... P68440 30068608 PDBbind: -logKd/Ki=4.01, Kd=98uM
    21813 6bed:A (2.75) BS01 RFP ? GO:0016020 ... P68440 30068608 PDBbind: -logKd/Ki=4.72, Kd=19uM
    21814 6bed:C (2.75) BS01 RFP ? GO:0016020 ... P68440 30068608 PDBbind: -logKd/Ki=4.72, Kd=19uM
    21815 6bee:A (3.11) BS01 RXM ? GO:0016020 ... P68440 30068608 PDBbind: -logKd/Ki=4.66, Kd=22uM
    21816 6bee:C (3.11) BS01 RXM ? GO:0016020 ... P68440 30068608 PDBbind: -logKd/Ki=4.66, Kd=22uM
    21817 6bef:A (3.21) BS01 3YI ? GO:0016020 ... P68440 30068608 PDBbind: -logKd/Ki=3.98, Kd=104uM
    21818 6bef:C (3.21) BS01 3YI ? GO:0016020 ... P68440 30068608 PDBbind: -logKd/Ki=3.98, Kd=104uM
    21819 6beh:A (3.0) BS01 RPT ? GO:0016020 ... P68440 30068608 PDBbind: -logKd/Ki=4.09, Kd=82uM
    21820 6beh:B (3.0) BS01 RPT ? GO:0016020 ... P68440 30068608 PDBbind: -logKd/Ki=4.09, Kd=82uM
    21821 6beh:C (3.0) BS01 RPT ? GO:0016020 ... P68440 30068608 PDBbind: -logKd/Ki=4.09, Kd=82uM
    21822 6bfa:A (2.8) BS01 UW5 2.7.11.17 GO:0004672 ... A0A0F7UUA6 27309760 PDBbind: -logKd/Ki=9.00, IC50=0.001uM
    BindingDB: IC50=1.000nM
    21823 6bfd:A (1.62) BS01 DJS 3.4.23.46 GO:0004190 ... P56817 29088532 MOAD: ic50=0.005uM
    PDBbind: -logKd/Ki=8.30, IC50=0.005uM
    21824 6bfe:A (1.51) BS01 DJV 3.4.23.46 GO:0004190 ... P56817 29088532 MOAD: ic50=1.4uM
    PDBbind: -logKd/Ki=5.85, IC50=1.40uM
    21825 6bfn:A (2.26) BS01 DL1 2.7.11.1 GO:0004672 ... P51617 29208712 MOAD: ic50=9.3nM
    PDBbind: -logKd/Ki=8.03, IC50=9.3nM
    21826 6bfp:A (1.292) BS02 DJY 3.4.21.4 GO:0004175 ... P00760 30876891 PDBbind: -logKd/Ki=7.70, IC50=0.02uM
    21827 6bfw:A (1.84) BS01 DK7 3.4.23.46 GO:0004190 ... P56817 29088532 MOAD: ic50=0.22uM
    PDBbind: -logKd/Ki=6.66, IC50=0.22uM
    21828 6bfx:A (1.99) BS01 DKJ 3.4.23.46 GO:0004190 ... P56817 29088532 MOAD: ic50=0.079uM
    PDBbind: -logKd/Ki=7.10, IC50=0.079uM
    21829 6bg3:A (1.05) BS01 DOJ 3.2.1.17 GO:0003796 ... P00720
    Q96GG9    		 29547696 MOAD: ic50=12uM
    PDBbind: -logKd/Ki=4.92, IC50=12uM
    21830 6bg5:A (1.1) BS01 DQD 3.2.1.17 GO:0003796 ... P00720
    Q96GG9    		 29547696 MOAD: ic50=1uM
    PDBbind: -logKd/Ki=6.00, IC50=1uM
    21831 6bgu:A (1.684) BS01 DKP 1.14.11.67 N/A P29375 29537847 MOAD: Kd=0.53uM
    PDBbind: -logKd/Ki=6.28, Kd=0.53uM
    BindingDB: IC50=<100nM, Kd=530nM
    21832 6bgv:A (1.592) BS01 DQG 1.14.11.67 N/A P29375 29537847 MOAD: Kd=0.18uM
    PDBbind: -logKd/Ki=6.74, Kd=0.18uM
    BindingDB: Kd=60nM, IC50=590nM
    21833 6bgw:A (1.644) BS01 DKS 1.14.11.67 N/A P29375 29537847 MOAD: Kd=0.21uM
    PDBbind: -logKd/Ki=6.68, Kd=0.21uM
    BindingDB: IC50=4500nM, Kd=210nM
    21834 6bgx:A (1.882) BS01 DKV 1.14.11.67 N/A P29375 29537847 MOAD: Kd=0.47uM
    PDBbind: -logKd/Ki=6.33, Kd=0.47uM
    BindingDB: Kd=470nM, IC50=22000nM
    21835 6bgy:A (1.22) BS01 DLJ 1.14.11.67 N/A P29375 29537847 MOAD: Kd=0.15uM
    PDBbind: -logKd/Ki=6.82, Kd=0.15uM
    BindingDB: Kd=150nM, IC50=290nM
    21836 6bgz:A (1.688) BS01 DNV 1.14.11.67 N/A P29375 29537847 MOAD: Kd=0.41uM
    PDBbind: -logKd/Ki=6.39, Kd=0.41uM
    BindingDB: Kd=410nM, IC50=1400nM
    21837 6bh0:A (1.985) BS01 DO1 1.14.11.67 N/A P29375 29537847 MOAD: Kd=0.22uM
    PDBbind: -logKd/Ki=6.66, Kd=0.22uM
    BindingDB: IC50=670nM, Kd=180nM
    21838 6bh1:A (1.932) BS01 DQG 1.14.11.67 N/A P29375 29537847 MOAD: Kd=0.06uM
    PDBbind: -logKd/Ki=7.22, Kd=0.06uM
    BindingDB: Kd=60nM, IC50=590nM
    21839 6bh2:A (1.447) BS02 90V 1.14.11.67 N/A P29375 29537847 MOAD: Kd=2.4uM
    PDBbind: -logKd/Ki=5.62, Kd=2.4uM
    BindingDB: IC50=570nM, Kd=2400nM, EC50=960nM
    21840 6bh3:A (1.701) BS01 DQJ 1.14.11.67 N/A P29375 29537847 PDBbind: -logKd/Ki=4.92, Kd>12uM
    BindingDB: EC50=1600nM, IC50=90nM
    21841 6bh5:A (1.651) BS01 DNY 1.14.11.67 N/A P29375 29537847 MOAD: Kd=0.25uM
    PDBbind: -logKd/Ki=6.60, Kd=0.25uM
    BindingDB: IC50=430nM, Kd=250nM
    21842 6bh8:A (3.85) BS02 RDF 3.4.24.84 GO:0001889 ... O75844 30082509 PDBbind: -logKd/Ki=5.12, IC50=7.6uM
    21843 6bhv:A (2.3) BS01 DQV 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 29487285 MOAD: Kd=5.87uM
    PDBbind: -logKd/Ki=5.23, Kd=5.87uM
    21844 6bib:A (1.95) BS01 DW7 2.7.7.48
    3.4.22.66
    3.6.1.15    		 GO:0004197 ... Q83883 30883881 PDBbind: -logKd/Ki=5.80, IC50=1.6uM
    21845 6bid:A (1.15) BS01 DW4 2.7.7.48
    3.4.22.66
    3.6.1.15    		 GO:0004197 ... Q83883 30883881 PDBbind: -logKd/Ki=5.54, IC50=2.9uM
    21846 6bik:A (1.901) BS01 DTJ 2.7.10.2 GO:0004672 ... Q06187 30756207 PDBbind: -logKd/Ki=8.19, IC50=6.4nM
    21847 6bjo:A (1.75) BS01 DUY ? N/A Q9NRD5 29280296 MOAD: ic50=513nM
    PDBbind: -logKd/Ki=6.29, IC50=0.51uM
    21848 6bjo:B (1.75) BS01 DUY ? N/A Q9NRD5 29280296 MOAD: ic50=513nM
    PDBbind: -logKd/Ki=6.29, IC50=0.51uM
    21849 6bjv:A (2.198) BS01 rna ? GO:0003723 ... Q66104 31021526 PDBbind: Kd=0.2nM
    21850 6bjv:A (2.198) BS02 rna ? GO:0003723 ... Q66104 31021526 PDBbind: Kd=0.2nM
    21851 6bjv:B (2.198) BS01 rna ? GO:0003723 ... Q66104 31021526 PDBbind: Kd=0.2nM
    21852 6bjv:B (2.198) BS02 rna ? GO:0003723 ... Q66104 31021526 PDBbind: Kd=0.2nM
    21853 6bke:A (1.95) BS01 DVJ 2.7.10.2 GO:0004672 ... Q06187 30756207 PDBbind: -logKd/Ki=8.35, IC50=4.5nM
    21854 6bkh:A (1.792) BS01 DVD 2.7.10.2 GO:0004672 ... Q06187 30756207 PDBbind: -logKd/Ki=8.89, IC50=1.3nM
    21855 6bkw:A (1.499) BS01 DXM 2.7.10.2 GO:0004672 ... Q06187 30756207 PDBbind: -logKd/Ki=8.30, IC50=5nM
    21856 6bkx:A (1.65) BS02 DWP 1.1.1.42 GO:0000287 ... O75874 30004704 PDBbind: -logKd/Ki=6.39, IC50=410nM
    21857 6bkx:C (1.65) BS02 DWP 1.1.1.42 GO:0000287 ... O75874 30004704 PDBbind: -logKd/Ki=6.39, IC50=410nM
    21858 6bky:C (2.17) BS01 K32 1.1.1.42 GO:0000287 ... O75874 30004704 PDBbind: -logKd/Ki=6.57, IC50=270nM
    BindingDB: IC50=270nM
    21859 6bky:D (2.17) BS02 K32 1.1.1.42 GO:0000287 ... O75874 30004704 MOAD: ic50=270nM
    PDBbind: -logKd/Ki=6.57, IC50=270nM
    BindingDB: IC50=270nM
    21860 6bl1:A (2.02) BS02 DWG 1.1.1.42 GO:0000287 ... O75874 30004704 MOAD: ic50=110nM
    PDBbind: -logKd/Ki=6.96, IC50=110nM
    BindingDB: IC50=1770nM
    21861 6bl1:B (2.02) BS01 DWG 1.1.1.42 GO:0000287 ... O75874 30004704 MOAD: ic50=110nM
    PDBbind: -logKd/Ki=6.96, IC50=110nM
    BindingDB: IC50=1770nM
    21862 6bl2:A (1.92) BS01 DWS 1.1.1.42 GO:0000287 ... O75874 30004704 PDBbind: -logKd/Ki=7.39, IC50=41nM
    21863 6bl2:C (1.92) BS02 DWS 1.1.1.42 GO:0000287 ... O75874 30004704 PDBbind: -logKd/Ki=7.39, IC50=41nM
    21864 6bln:A (1.3) BS01 DY4 2.7.10.2 GO:0004672 ... Q06187 30756207 PDBbind: -logKd/Ki=8.80, IC50=1.6nM
    21865 6blw:A (1.835) BS01 dna ? N/A P19544 29294058 PDBbind: Kd=10nM
    21866 6blw:A (1.835) BS02 dna ? N/A P19544 29294058 PDBbind: Kd=10nM
    21867 6bm5:A (1.5) BS01 SAM 2.1.1.13 GO:0008705 ... P13009 29733595 MOAD: Kd=1.43uM
    PDBbind: -logKd/Ki=5.84, Kd=1.43uM
    21868 6bm6:A (1.504) BS01 SAH 2.1.1.13 GO:0008705 ... P13009 29733595 MOAD: Kd=20.8uM
    PDBbind: -logKd/Ki=4.68, Kd=20.8uM
    21869 6bmi:A (3.9) BS01 SER ? GO:0005283 ... O59010 29295993 PDBbind: -logKd/Ki=5.05, Kd=9uM
    21870 6bmr:A (2.205) BS01 DZV 3.1.3.48 GO:0004725 ... Q06124 29304282 PDBbind: -logKd/Ki=4.22, IC50=60uM
    21871 6bmv:A (2.053) BS01 DZS 3.1.3.48 GO:0004725 ... Q06124 29304282 PDBbind: -logKd/Ki=4.68, IC50=21uM
    21872 6bmx:A (2.424) BS01 DYV 3.1.3.48 GO:0004725 ... Q06124 29304282 PDBbind: -logKd/Ki=4.72, IC50=18.9uM
    21873 6bnk:A (3.2) BS01 AGH ? N/A P11609 29576533 PDBbind: -logKd/Ki=6.99, Kd=102nM
    21874 6bnk:C (3.2) BS01 AGH N/A N/A N/A 29576533 PDBbind: -logKd/Ki=6.99, Kd=102nM
    21875 6bnl:A (2.6) BS01 QWV ? N/A P11609 29576533 PDBbind: -logKd/Ki=6.96, Kd=110nM
    21876 6bnl:C (2.6) BS01 QWV N/A N/A N/A 29576533 PDBbind: -logKd/Ki=6.96, Kd=110nM
    21877 6bny:A (3.341) BS01 E0M 2.7.11.1 GO:0002218 ... Q9UHD2 30082428 PDBbind: -logKd/Ki=6.40, Kd=0.4uM
    BindingDB: IC50=180nM
    21878 6bo6:A (2.801) BS01 E0V 3.2.1.31 GO:0004553 ... C4Z6Z2 30062115 PDBbind: -logKd/Ki=7.10, IC50=80nM
    21879 6bod:A (3.197) BS01 E0P 2.7.11.1 GO:0002218 ... Q9UHD2 30082428 PDBbind: -logKd/Ki=4.26, Kd=55uM
    BindingDB: IC50=123000nM
    21880 6boe:A (3.598) BS01 E0S 2.7.11.1 GO:0002218 ... Q9UHD2 30082428 PDBbind: -logKd/Ki=5.54, Kd=2.9uM
    BindingDB: IC50=180nM
    21881 6boy:B (3.33) BS02 RN6 ? GO:0005515 ... Q96SW2 29892083 PDBbind: -logKd/Ki=5.74, IC50~1.8uM
    21882 6boy:C (3.33) BS01 RN6 ? N/A O60885 29892083 PDBbind: -logKd/Ki=5.74, IC50~1.8uM
    21883 6bq0:A (2.0) BS01 E3A 3.1.1.23 GO:0004622 ... Q99685 29498843 PDBbind: -logKd/Ki=7.34, IC50=46nM
    21884 6bqg:A (3.0) BS01 ERM ? GO:0004930 ... P0ABE7
    P28335    		 29398112 PDBbind: -logKd/Ki=8.93, Ki=1.17nM
    21885 6bqh:A (2.7) BS01 E2J ? GO:0004930 ... P0ABE7
    P28335    		 29398112 PDBbind: -logKd/Ki=9.80, Ki=0.16nM
    21886 6bqj:A (1.69) BS01 Z1B 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0006508 ... P27958 29456803 PDBbind: -logKd/Ki=6.00, IC50>1000nM
    21887 6bqk:A (1.97) BS01 Z1E 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0006508 ... P27958 29456803 MOAD: ic50=1nM
    PDBbind: -logKd/Ki=9.00, IC50=1nM
    21888 6br2:A (3.18) BS01 E3S ? GO:0003677 ... P51449 29510038 PDBbind: -logKd/Ki=8.72, IC50=1.9nM
    21889 6br3:A (3.0) BS01 E3V ? GO:0003677 ... P51449 29510038 PDBbind: -logKd/Ki=8.72, IC50=1.9nM
    21890 6bs3:A (2.3) BS01 ADP ? GO:0005524 ... P9WKX5 31036728 MOAD: Kd=1.5uM
    PDBbind: -logKd/Ki=5.82, Kd=1.5uM
    21891 6bs3:B (2.3) BS01 ADP N/A GO:0005524 ... N/A 31036728 MOAD: Kd=1.5uM
    PDBbind: -logKd/Ki=5.82, Kd=1.5uM
    21892 6bs4:A (2.5) BS01 AGS ? GO:0005524 ... P9WKX5 31036728 MOAD: Kd=2.8uM
    PDBbind: -logKd/Ki=5.55, Kd=2.8uM
    21893 6bs5:A (3.1) BS01 ANP ? GO:0005524 ... P9WKX5 31036728 PDBbind: -logKd/Ki=5.70, Kd=2.0uM
    21894 6bsk:A (2.573) BS01 MVG 2.7.11.1 GO:0004672 ... P11309 29559278 PDBbind: -logKd/Ki=6.92, IC50=0.12uM
    21895 6bsl:A (1.45) BS03 EVV 3.4.24.19 GO:0004222 ... P13497 30034610 MOAD: Ki=6.8pM
    PDBbind: -logKd/Ki=9.00, IC50<1nM
    BindingDB: Ki=6.8nM, IC50=<1.000000nM
    21896 6bsm:A (2.33) BS03 E7D 3.4.24.19 GO:0004222 ... P13497 30034610 MOAD: ic50=160nM
    PDBbind: -logKd/Ki=6.80, IC50=160nM
    21897 6bsx:A (1.65) BS02 E7S 3.6.5.- GO:0000139 ... Q15382 29416044 PDBbind: -logKd/Ki=3.30, IC50>500uM
    21898 6bt0:B (2.6) BS02 E7V 3.6.5.- GO:0000139 ... Q15382 29416044 PDBbind: -logKd/Ki=5.68, IC50=2.1uM
    21899 6bt6:A (1.05) BS01 3GK 3.5.2.6 GO:0008800 ... Q9L5C7 29844038 MOAD: Ki=1.23uM
    PDBbind: -logKd/Ki=5.91, Ki=1.23uM
    21900 6bt6:A (1.05) BS02 3GK 3.5.2.6 GO:0008800 ... Q9L5C7 29844038 MOAD: Ki=1.23uM
    PDBbind: -logKd/Ki=5.91, Ki=1.23uM
    21901 6bto:A (2.05) BS03 E8P 3.4.24.19 GO:0004222 ... P13497 30034610 PDBbind: -logKd/Ki=5.00, IC50>10000nM
    21902 6bu0:B (2.427) BS01 IHP 2.7.1.137
    2.7.1.153
    2.7.1.154    		 N/A O00443 30293811 PDBbind: -logKd/Ki=5.96, Kd=1.1uM
    21903 6bu0:B (2.427) BS02 IHP 2.7.1.137
    2.7.1.153
    2.7.1.154    		 N/A O00443 30293811 PDBbind: -logKd/Ki=5.96, Kd=1.1uM
    21904 6bu1:A (1.584) BS03 E9S 2.3.3.9 GO:0000287 ... P9WK17 30137983 MOAD: ic50=0.06uM
    PDBbind: -logKd/Ki=7.22, IC50=0.06uM
    21905 6bu3:A (1.15) BS01 3GK 3.5.2.6 GO:0008800 ... B5LY47 29844038 MOAD: Ki=0.28uM
    PDBbind: -logKd/Ki=6.55, Ki=0.28uM
    21906 6bu3:A (1.15) BS02 3GK 3.5.2.6 GO:0008800 ... B5LY47 29844038 MOAD: Ki=0.28uM
    PDBbind: -logKd/Ki=6.55, Ki=0.28uM
    21907 6buv:B (1.86) BS01 E9A 2.7.7.18 GO:0000309 ... P9WJJ5 30969758 PDBbind: -logKd/Ki=4.74, IC50=18uM
    21908 6bux:A (1.856) BS01 dna 3.5.4.38 GO:0003824 ... Q9HC16 29941968 PDBbind: Kd=55uM
    21909 6buz:A (3.92) BS01 dna ? GO:0000132 ... P49450 29269420 PDBbind: Kd=0.046uM
    21910 6buz:A (3.92) BS02 dna ? GO:0000132 ... P49450 29269420 PDBbind: Kd=0.046uM
    21911 6buz:B (3.92) BS01 dna ? GO:0000781 ... P62805 29269420 PDBbind: Kd=0.046uM
    21912 6buz:B (3.92) BS02 dna ? GO:0000781 ... P62805 29269420 PDBbind: Kd=0.046uM
    21913 6buz:C (3.92) BS01 dna ? GO:0000786 ... P04908 29269420 PDBbind: Kd=0.046uM
    21914 6buz:C (3.92) BS02 dna ? GO:0000786 ... P04908 29269420 PDBbind: Kd=0.046uM
    21915 6buz:D (3.92) BS01 dna ? GO:0000786 ... P06899 29269420 PDBbind: Kd=0.046uM
    21916 6buz:D (3.92) BS02 dna ? GO:0000786 ... P06899 29269420 PDBbind: Kd=0.046uM
    21917 6buz:E (3.92) BS01 dna ? GO:0000132 ... P49450 29269420 PDBbind: Kd=0.046uM
    21918 6buz:E (3.92) BS02 dna ? GO:0000132 ... P49450 29269420 PDBbind: Kd=0.046uM
    21919 6buz:F (3.92) BS01 dna ? GO:0000781 ... P62805 29269420 PDBbind: Kd=0.046uM
    21920 6buz:F (3.92) BS02 dna ? GO:0000781 ... P62805 29269420 PDBbind: Kd=0.046uM
    21921 6buz:G (3.92) BS01 dna ? GO:0000786 ... P04908 29269420 PDBbind: Kd=0.046uM
    21922 6buz:G (3.92) BS02 dna ? GO:0000786 ... P04908 29269420 PDBbind: Kd=0.046uM
    21923 6buz:H (3.92) BS01 dna ? GO:0000786 ... P06899 29269420 PDBbind: Kd=0.046uM
    21924 6buz:H (3.92) BS02 dna ? GO:0000786 ... P06899 29269420 PDBbind: Kd=0.046uM
    21925 6buz:N (3.92) BS01 dna ? GO:0007059 ... P0AEX9
    Q96H22    		 29269420 PDBbind: Kd=0.046uM
    21926 6bw2:A (2.75) BS01 ECY ? GO:0042981 ... Q07820 29323899 PDBbind: -logKd/Ki=7.68, Ki=21nM
    BindingDB: Ki=21nM
    21927 6bw5:A (3.1) BS01 TUM 2.7.8.15 GO:0003975 ... Q9H3H5 29459785 PDBbind: -logKd/Ki=8.25, Kd=5.6nM
    21928 6bw8:A (2.9) BS01 ECM ? GO:0042981 ... Q07820 29323899 PDBbind: -logKd/Ki=9.00, Ki<1.0nM
    BindingDB: Ki=<1.000000nM
    21929 6bwy:A (2.9) BS01 dna 3.5.4.-
    3.5.4.38    		 GO:0000723 ... O13988
    Q9HC16    		 29596531 PDBbind: Kd=26uM
    21930 6bwy:B (2.9) BS01 dna 3.5.4.-
    3.5.4.38    		 GO:0000723 ... O13988
    Q9HC16    		 29596531 PDBbind: Kd=26uM
    21931 6bwy:B (2.9) BS02 dna 3.5.4.-
    3.5.4.38    		 GO:0000723 ... O13988
    Q9HC16    		 29596531 PDBbind: Kd=26uM
    21932 6bwy:E (2.9) BS01 dna 3.5.4.-
    3.5.4.38    		 GO:0000723 ... O13988
    Q9HC16    		 29596531 PDBbind: Kd=26uM
    21933 6bwy:G (2.9) BS01 dna 3.5.4.-
    3.5.4.38    		 GO:0000723 ... O13988
    Q9HC16    		 29596531 PDBbind: Kd=26uM
    21934 6bx6:A (2.9) BS01 EDJ 2.7.11.1
    2.7.11.31    		 GO:0004672 ... P54646 29695504 PDBbind: -logKd/Ki=6.48, IC50=0.33uM
    21935 6bxy:A (1.82) BS01 EEV ? GO:0005634 ... O00255 29738674 PDBbind: -logKd/Ki=8.05, Kd=9nM
    BindingDB: IC50=7.5nM, Kd=10.0nM
    21936 6by8:A (1.9) BS01 FNV ? GO:0005634 ... O00255 29738674 PDBbind: -logKd/Ki=6.91, IC50=123nM
    BindingDB: IC50=123nM
    21937 6byz:A (2.95625) BS02 J18 3.4.24.56 GO:0001618 ... P14735 31086331 PDBbind: -logKd/Ki=8.37, Ki=4.3nM
    21938 6c0n:A (2.001) BS01 K5C 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 30044217 MOAD: ic50=4.3nM
    PDBbind: -logKd/Ki=8.37, IC50=4.3nM
    21939 6c0r:A (2.049) BS01 K5C 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 30044217 MOAD: ic50=31nM
    PDBbind: -logKd/Ki=7.51, IC50=31nM
    21940 6c0s:A (2.35) BS01 EEJ 3.4.21.27 GO:0004252 ... P03951 29501396 MOAD: Ki=89nM
    PDBbind: -logKd/Ki=7.05, Ki=89nM
    21941 6c0t:A (1.98) BS01 EE4 2.7.11.12 GO:0004672 ... Q13976 29769318 MOAD: ic50=43.1nM
    PDBbind: -logKd/Ki=7.37, IC50=43.1nM
    21942 6c0u:A (2.65) BS01 EE4 2.7.11.11 GO:0000287 ... P17612 29769318 PDBbind: -logKd/Ki=5.99, IC50=1030nM
    21943 6c1a:A (2.05) BS01 dna ? GO:0003677 ... Q9UBB5 29567833 PDBbind: Kd=7.2uM
    21944 6c1a:A (2.05) BS02 dna ? GO:0003677 ... Q9UBB5 29567833 PDBbind: Kd=7.2uM
    21945 6c1a:B (2.05) BS01 dna ? GO:0003677 ... Q9UBB5 29567833 PDBbind: Kd=7.2uM
    21946 6c1a:B (2.05) BS02 dna ? GO:0003677 ... Q9UBB5 29567833 PDBbind: Kd=7.2uM
    21947 6c1a:E (2.05) BS01 dna ? GO:0003677 ... Q9UBB5 29567833 PDBbind: Kd=7.2uM
    21948 6c1a:E (2.05) BS02 dna ? GO:0003677 ... Q9UBB5 29567833 PDBbind: Kd=7.2uM
    21949 6c1a:F (2.05) BS01 dna ? GO:0003677 ... Q9UBB5 29567833 PDBbind: Kd=7.2uM
    21950 6c1a:F (2.05) BS02 dna ? GO:0003677 ... Q9UBB5 29567833 PDBbind: Kd=7.2uM
    21951 6c1s:A (2.31) BS01 EFV 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 GO:0016301 ... P48736 29847724 MOAD: Ki=0.004uM
    PDBbind: -logKd/Ki=8.52, Ki=3nM
    BindingDB: Ki=3.0nM
    21952 6c1t:A (1.84) BS01 dna ? GO:0003677 ... Q9UBB5 29567833 PDBbind: Kd=3.2uM
    21953 6c1t:A (1.84) BS02 dna ? GO:0003677 ... Q9UBB5 29567833 PDBbind: Kd=3.2uM
    21954 6c1t:D (1.84) BS01 dna ? GO:0003677 ... Q9UBB5 29567833 PDBbind: Kd=3.2uM
    21955 6c1t:D (1.84) BS02 dna ? GO:0003677 ... Q9UBB5 29567833 PDBbind: Kd=3.2uM
    21956 6c1v:A (2.3) BS01 dna ? GO:0003677 ... Q9UBB5 29567833 PDBbind: Kd=13uM
    21957 6c1v:A (2.3) BS02 dna ? GO:0003677 ... Q9UBB5 29567833 PDBbind: Kd=13uM
    21958 6c1v:B (2.3) BS01 dna ? GO:0003677 ... Q9UBB5 29567833 PDBbind: Kd=13uM
    21959 6c1v:B (2.3) BS02 dna ? GO:0003677 ... Q9UBB5 29567833 PDBbind: Kd=13uM
    21960 6c1v:E (2.3) BS01 dna ? GO:0003677 ... Q9UBB5 29567833 PDBbind: Kd=13uM
    21961 6c1v:E (2.3) BS02 dna ? GO:0003677 ... Q9UBB5 29567833 PDBbind: Kd=13uM
    21962 6c1v:F (2.3) BS01 dna ? GO:0003677 ... Q9UBB5 29567833 PDBbind: Kd=13uM
    21963 6c1v:F (2.3) BS02 dna ? GO:0003677 ... Q9UBB5 29567833 PDBbind: Kd=13uM
    21964 6c28:C (2.09) BS01 WCA ? GO:0003700 ... Q6N8V9 29794028 MOAD: Kd=68uM
    PDBbind: -logKd/Ki=4.17, Kd=68uM
    21965 6c2r:A (1.96) BS01 EG7 2.7.11.1 GO:0000212 ... O14965 30373917 MOAD: Ki=0.8nM
    PDBbind: -logKd/Ki=9.10, Ki=0.8nM
    21966 6c2t:A (1.73) BS01 EGJ 2.7.11.1 GO:0000212 ... O14965 30373917 PDBbind: -logKd/Ki=9.05, Ki<0.9nM
    21967 6c2x:A (2.6) BS02 EHV 2.3.3.9 GO:0000287 ... P9WK17 30137983 PDBbind: -logKd/Ki=4.76, IC50=17.4uM
    21968 6c2y:A (2.74) BS01 EJS 2.7.11.15 GO:0001664 ... P25098 29627263 PDBbind: -logKd/Ki=6.60, IC50=0.25uM
    21969 6c31:A (3.0) BS01 dna ? GO:0000976 ... O53623 29921668 PDBbind: Kd=357nM
    21970 6c31:A (3.0) BS02 dna ? GO:0000976 ... O53623 29921668 PDBbind: Kd=357nM
    21971 6c31:B (3.0) BS01 dna ? GO:0000976 ... O53623 29921668 PDBbind: Kd=357nM
    21972 6c31:B (3.0) BS02 dna ? GO:0000976 ... O53623 29921668 PDBbind: Kd=357nM
    21973 6c31:C (3.0) BS01 dna ? GO:0000976 ... O53623 29921668 PDBbind: Kd=357nM
    21974 6c31:C (3.0) BS02 dna ? GO:0000976 ... O53623 29921668 PDBbind: Kd=357nM
    21975 6c31:D (3.0) BS01 dna ? GO:0000976 ... O53623 29921668 PDBbind: Kd=357nM
    21976 6c31:D (3.0) BS02 dna ? GO:0000976 ... O53623 29921668 PDBbind: Kd=357nM
    21977 6c31:E (3.0) BS01 dna ? GO:0000976 ... O53623 29921668 PDBbind: Kd=357nM
    21978 6c31:E (3.0) BS02 dna ? GO:0000976 ... O53623 29921668 PDBbind: Kd=357nM
    21979 6c31:F (3.0) BS01 dna ? GO:0000976 ... O53623 29921668 PDBbind: Kd=357nM
    21980 6c31:F (3.0) BS02 dna ? GO:0000976 ... O53623 29921668 PDBbind: Kd=357nM
    21981 6c31:G (3.0) BS01 dna ? GO:0000976 ... O53623 29921668 PDBbind: Kd=357nM
    21982 6c31:G (3.0) BS02 dna ? GO:0000976 ... O53623 29921668 PDBbind: Kd=357nM
    21983 6c31:H (3.0) BS01 dna ? GO:0000976 ... O53623 29921668 PDBbind: Kd=357nM
    21984 6c31:H (3.0) BS02 dna ? GO:0000976 ... O53623 29921668 PDBbind: Kd=357nM
    21985 6c3e:A (2.6) BS01 EJY 2.7.11.1 GO:0004672 ... Q13546 29485864 PDBbind: -logKd/Ki=7.20, Ki=63.1nM
    BindingDB: Ki=63nM
    21986 6c3l:A (1.46092) BS01 EGP ? N/A P41182 29969259 MOAD: Kd=44uM
    PDBbind: -logKd/Ki=4.44, Kd=36uM
    BindingDB: Kd=36000nM, IC50=27000nM
    21987 6c3l:A (1.46092) BS02 EGP ? N/A P41182 29969259 MOAD: Kd=44uM
    PDBbind: -logKd/Ki=4.44, Kd=36uM
    BindingDB: Kd=36000nM, IC50=27000nM
    21988 6c3n:A (2.53171) BS01 EHY ? N/A P41182 29969259 PDBbind: -logKd/Ki=2.49, Kd=3.2mM
    BindingDB: Kd=3200000nM
    21989 6c3n:A (2.53171) BS02 EHY ? N/A P41182 29969259 PDBbind: -logKd/Ki=2.49, Kd=3.2mM
    BindingDB: Kd=3200000nM
    21990 6c3n:B (2.53171) BS01 EHY ? N/A P41182 29969259 PDBbind: -logKd/Ki=2.49, Kd=3.2mM
    BindingDB: Kd=3200000nM
    21991 6c3n:B (2.53171) BS02 EHY ? N/A P41182 29969259 PDBbind: -logKd/Ki=2.49, Kd=3.2mM
    BindingDB: Kd=3200000nM
    21992 6c3u:A (1.85) BS02 NY2 ? GO:0046872 ... A0A0H3GM04 30642934 PDBbind: -logKd/Ki=5.40, Kd=4.0uM
    21993 6c3u:A (1.85) BS03 NY2 ? GO:0046872 ... A0A0H3GM04 30642934 PDBbind: -logKd/Ki=5.40, Kd=4.0uM
    21994 6c3u:B (1.85) BS01 NY2 ? GO:0046872 ... A0A0H3GM04 30642934 PDBbind: -logKd/Ki=5.40, Kd=4.0uM
    21995 6c3u:B (1.85) BS02 NY2 ? GO:0046872 ... A0A0H3GM04 30642934 PDBbind: -logKd/Ki=5.40, Kd=4.0uM
    21996 6c4d:A (2.52) BS01 EJP 2.7.11.1 GO:0004672 ... Q13546 29485864 PDBbind: -logKd/Ki=9.04, Ki=0.912nM
    BindingDB: IC50=1.3nM, Ki=0.912011nM
    21997 6c4g:A (2.39) BS01 EQG 3.4.23.- GO:0004190 ... A5K302 29800827 MOAD: ic50=0.005uM
    PDBbind: -logKd/Ki=8.30, IC50=0.005uM
    21998 6c5f:B (1.4) BS01 7L9 4.1.1.84 GO:0004167 ... P30046 29847104 MOAD: Ki=33uM
    PDBbind: -logKd/Ki=4.48, Ki=33uM
    21999 6c5q:A (2.404) BS01 EKS ? GO:0003677 ... P37231 30123887 MOAD: ic50=220nM
    PDBbind: -logKd/Ki=6.66, IC50=220nM
    BindingDB: IC50=321nM
    22000 6c5q:A (2.404) BS02 EKS ? GO:0003677 ... P37231 30123887 MOAD: ic50=220nM
    PDBbind: -logKd/Ki=6.66, IC50=220nM
    BindingDB: IC50=321nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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