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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 24809 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    21401 5ypp:A (1.9) BS01 VAL 2.2.1.6 GO:0003984 ... P0ADF8 30887800 PDBbind: -logKd/Ki=4.64, Kd~23uM
    21402 5ypp:A (1.9) BS02 VAL 2.2.1.6 GO:0003984 ... P0ADF8 30887800 PDBbind: -logKd/Ki=4.64, Kd~23uM
    21403 5ypp:B (1.9) BS01 VAL 2.2.1.6 GO:0003984 ... P0ADF8 30887800 PDBbind: -logKd/Ki=4.64, Kd~23uM
    21404 5ypp:B (1.9) BS02 VAL 2.2.1.6 GO:0003984 ... P0ADF8 30887800 PDBbind: -logKd/Ki=4.64, Kd~23uM
    21405 5ypw:A (2.3) BS01 VAL 2.2.1.6 GO:0003984 ... P0ADF8 30887800 PDBbind: -logKd/Ki=4.64, Kd~23uM
    21406 5ypw:A (2.3) BS02 VAL 2.2.1.6 GO:0003984 ... P0ADF8 30887800 PDBbind: -logKd/Ki=4.64, Kd~23uM
    21407 5ypw:B (2.3) BS01 VAL 2.2.1.6 GO:0003984 ... P0ADF8 30887800 PDBbind: -logKd/Ki=4.64, Kd~23uM
    21408 5ypw:B (2.3) BS02 VAL 2.2.1.6 GO:0003984 ... P0ADF8 30887800 PDBbind: -logKd/Ki=4.64, Kd~23uM
    21409 5ypy:A (1.966) BS01 VAL 2.2.1.6 GO:0003984 ... P0ADF8 30887800 PDBbind: -logKd/Ki=4.64, Kd~23uM
    21410 5ypy:A (1.966) BS02 VAL 2.2.1.6 GO:0003984 ... P0ADF8 30887800 PDBbind: -logKd/Ki=4.64, Kd~23uM
    21411 5ypy:B (1.966) BS01 VAL 2.2.1.6 GO:0003984 ... P0ADF8 30887800 PDBbind: -logKd/Ki=4.64, Kd~23uM
    21412 5ypy:B (1.966) BS02 VAL 2.2.1.6 GO:0003984 ... P0ADF8 30887800 PDBbind: -logKd/Ki=4.64, Kd~23uM
    21413 5yql:A (1.601) BS01 A2I 2.3.1.-
    2.3.1.286    		 GO:0017136 ... Q8IXJ6 29957526 MOAD: ic50=25.9uM
    PDBbind: -logKd/Ki=4.59, IC50=25.9uM
    BindingDB: IC50=26303nM
    21414 5yqn:A (1.6) BS02 L55 2.3.1.-
    2.3.1.286    		 GO:0017136 ... Q8IXJ6 29957526 MOAD: ic50=93.7uM
    PDBbind: -logKd/Ki=4.03, IC50=93.7uM
    BindingDB: IC50=93700nM
    21415 5yqo:A (1.483) BS02 L5C 2.3.1.-
    2.3.1.286    		 GO:0017136 ... Q8IXJ6 29957526 MOAD: ic50=0.815uM
    PDBbind: -logKd/Ki=6.09, IC50=0.815uM
    BindingDB: IC50=813nM
    21416 5yqx:A (1.82) BS01 E0K ? N/A O60885 29758518 PDBbind: -logKd/Ki=6.96, Kd=110nM
    BindingDB: Kd=110nM, IC50=100nM
    21417 5yr4:A (1.82) BS04 TN4 3.4.11.18 GO:0006508 ... P53582 30837307 PDBbind: -logKd/Ki=6.34, Ki=0.46uM
    21418 5yr5:A (1.6) BS04 OVA 3.4.11.18 GO:0006508 ... P53582 30837307 PDBbind: -logKd/Ki=6.74, Ki=0.18uM
    21419 5yr6:A (1.75) BS03 TN4 3.4.11.18 GO:0006508 ... P53582 30837307 PDBbind: -logKd/Ki=5.34, Ki=4.57uM
    21420 5yto:B (1.9) BS02 946 1.15.1.1 GO:0000302 ... P00441 29679384 MOAD: Kd=33uM
    PDBbind: -logKd/Ki=4.48, Kd=33uM
    21421 5yto:B (1.9) BS04 946 1.15.1.1 GO:0000302 ... P00441 29679384 MOAD: Kd=33uM
    PDBbind: -logKd/Ki=4.48, Kd=33uM
    21422 5yts:A (1.77) BS01 rna ? GO:0003676 ... P67809 31160337 PDBbind: Kd=2.77uM
    21423 5ytt:A (1.6) BS01 rna ? GO:0003676 ... P67809 31160337 PDBbind: Kd=3.77uM
    21424 5ytu:A (1.9) BS01 5FW 1.15.1.1 GO:0000302 ... P00441 29679384 MOAD: Kd=12uM
    PDBbind: -logKd/Ki=4.92, Kd=12uM
    21425 5ytv:A (1.7) BS01 rna ? GO:0003676 ... P67809 31160337 PDBbind: Kd=1.26uM
    21426 5ytx:A (1.551) BS01 rna ? GO:0003676 ... P67809 31160337 PDBbind: Kd=1.34uM
    21427 5yu9:A (1.95) BS01 1E8 2.7.10.1 GO:0004672 ... P00533 27626175 PDBbind: -logKd/Ki=6.74, Kd=0.18uM
    BindingDB: IC50=0.5nM, Kd=6.9nM
    21428 5yum:A (2.432) BS01 ILE 2.2.1.6 GO:0003984 ... P0ADF8 30887800 PDBbind: -logKd/Ki=3.65, Ki=223uM
    21429 5yun:B (2.67) BS01 MYC ? GO:0003697 ... P40947 30213633 PDBbind: -logKd/Ki=5.52, IC50=3uM
    21430 5yun:D (2.67) BS01 MYC ? GO:0003697 ... P40947 30213633 PDBbind: -logKd/Ki=5.52, IC50=3uM
    21431 5yve:A (3.4) BS02 AF9 ? GO:0001614 ... P56373 29674445 PDBbind: -logKd/Ki=6.48, IC50=0.33uM
    BindingDB: IC50=45nM
    21432 5yvt:A (2.4) BS02 NAI 1.1.1.41 GO:0000287 ... P50213 29453450 MOAD: Kd=109uM
    PDBbind: -logKd/Ki=3.96, Kd=109uM
    21433 5yvt:A (2.4) BS03 NAI 1.1.1.41 GO:0000287 ... P50213 29453450 MOAD: Kd=109uM
    PDBbind: -logKd/Ki=3.96, Kd=109uM
    21434 5yvt:B (2.4) BS01 NAI ? GO:0000287 ... P51553 29453450 MOAD: Kd=109uM
    PDBbind: -logKd/Ki=3.96, Kd=109uM
    21435 5ywx:A (1.74) BS02 93C 2.5.1.18
    5.3.99.2    		 GO:0000287 ... O60760 30121213 MOAD: Kd=0.14nM
    PDBbind: -logKd/Ki=9.85, Kd=0.14nM
    BindingDB: Kd=0.140000nM
    21436 5ywy:A (3.2) BS01 7UR ? GO:0004930 ... P35408 30510193 PDBbind: -logKd/Ki=7.23, Kd=59nM
    21437 5yyb:A (2.484) BS01 NGE ? GO:0015833 ... Q7VL18 30315109 MOAD: Kd=277nM
    PDBbind: -logKd/Ki=6.56, Kd=277nM
    21438 5yyf:A (1.903) BS03 FOA ? GO:0006355 ... P42568 30374167 PDBbind: -logKd/Ki=6.48, Kd=0.33uM
    21439 5yz2:A (1.75) BS01 AMP ? N/A P0AE78 29453981 MOAD: Kd=11.3uM
    PDBbind: -logKd/Ki=4.95, Kd=11.3uM
    21440 5yz2:B (1.75) BS01 AMP ? N/A P0AE78 29453981 MOAD: Kd=11.3uM
    PDBbind: -logKd/Ki=4.95, Kd=11.3uM
    21441 5yz7:A (1.898) BS01 94X 3.1.-.- N/A Q10QA5 29727000 PDBbind: -logKd/Ki=4.75, IC50=17.8uM
    21442 5yzc:B (2.334) BS01 95C ? GO:0019064 ... Q786F3 29463726 PDBbind: -logKd/Ki=5.52, IC50=3.0uM
    21443 5yzz:C (2.58) BS01 dna ? GO:0003677 ... Q8W4L5 29733847 PDBbind: Kd=6.13uM
    21444 5yzz:C (2.58) BS02 dna ? GO:0003677 ... Q8W4L5 29733847 PDBbind: Kd=6.13uM
    21445 5z1c:U (1.45) BS01 ZXI 3.4.21.73 GO:0004252 ... P00749 N/A PDBbind: -logKd/Ki=2.86, Ki=1.38mM
    21446 5z1r:A (1.62) BS01 EFL ? N/A O60885 29541371 PDBbind: -logKd/Ki=5.70, IC50=1.99uM
    BindingDB: IC50=1990nM
    21447 5z1s:A (1.42) BS01 EFM ? N/A O60885 29541371 PDBbind: -logKd/Ki=6.16, IC50=0.69uM
    BindingDB: Kd=302nM, IC50=690nM
    21448 5z1t:A (1.42) BS01 EFN ? N/A O60885 29541371 PDBbind: -logKd/Ki=6.20, IC50=0.63uM
    BindingDB: Kd=498nM, IC50=630nM
    21449 5z2t:C (2.623) BS01 dna ? GO:0003677 ... Q9UBX2 29572508 PDBbind: Kd=7.2uM
    21450 5z2t:C (2.623) BS02 dna ? GO:0003677 ... Q9UBX2 29572508 PDBbind: Kd=7.2uM
    21451 5z2t:D (2.623) BS01 dna ? GO:0003677 ... Q9UBX2 29572508 PDBbind: Kd=7.2uM
    21452 5z4h:A (2.0) BS01 A8K 5.6.2.2 GO:0003677 ... P0AES6 30429968 PDBbind: -logKd/Ki=3.02, IC50=0.95mM
    21453 5z4o:A (1.73) BS01 HX8 5.6.2.2 GO:0003677 ... P0AES6 30429968 PDBbind: -logKd/Ki=3.28, IC50=0.53mM
    21454 5z5f:A (2.1) BS02 FUB 3.2.1.37 GO:0004553 ... Q2I2N4 29698436 PDBbind: -logKd/Ki=2.17, Ki=6.8mM
    21455 5z66:A (1.8) BS01 VDM N/A GO:0004555 ... N/A 30657252 PDBbind: -logKd/Ki=6.69, Kd=206nM
    21456 5z68:A (3.0) BS01 ATP ? GO:0000731 ... Q8RDL3 29391496 PDBbind: -logKd/Ki=5.89, Kd=1.3uM
    21457 5z68:A (3.0) BS02 ATP ? GO:0000731 ... Q8RDL3 29391496 PDBbind: -logKd/Ki=5.89, Kd=1.3uM
    21458 5z68:B (3.0) BS01 ATP ? GO:0000731 ... Q8RDL3 29391496 PDBbind: -logKd/Ki=5.89, Kd=1.3uM
    21459 5z68:B (3.0) BS02 ATP ? GO:0000731 ... Q8RDL3 29391496 PDBbind: -logKd/Ki=5.89, Kd=1.3uM
    21460 5z6z:A (2.301) BS01 dna ? GO:0003677 ... Q9UBX2 30322619 PDBbind: Kd=45.24nM
    21461 5z6z:A (2.301) BS02 dna ? GO:0003677 ... Q9UBX2 30322619 PDBbind: Kd=45.24nM
    21462 5z7b:A (2.1) BS01 VNL ? N/A Q8NN31 30095229 MOAD: Kd=13uM
    PDBbind: -logKd/Ki=4.89, Kd=13uM
    21463 5z7b:B (2.1) BS01 VNL ? N/A Q8NN31 30095229 MOAD: Kd=13uM
    PDBbind: -logKd/Ki=4.89, Kd=13uM
    21464 5z7j:A (1.98) BS01 36J ? N/A A0A0D2ILK1 N/A PDBbind: -logKd/Ki=6.60, Kd=0.25uM
    21465 5z89:A (1.42) BS01 EGC ? GO:0046872 ... A0A0M3PNA2 30021834 PDBbind: -logKd/Ki=6.71, Kd=195nM
    21466 5z95:A (1.2) BS01 EGC ? GO:0046872 ... A0A0M3PNA2 30021834 PDBbind: -logKd/Ki=6.55, Kd=284nM
    21467 5z99:A (1.494) BS01 SLB ? GO:0015833 ... Q7VL18 30315109 MOAD: Kd=133nM
    PDBbind: -logKd/Ki=6.88, Kd=133nM
    21468 5z9e:A (1.8) BS01 27K 5.6.2.2 GO:0003677 ... P0AES6 30429968 PDBbind: -logKd/Ki=3.48, IC50=0.33mM
    21469 5z9x:A (2.8) BS01 rna 3.1.-.- GO:0000175 ... A3KPE8 30181559 PDBbind: Kd=124.5uM
    21470 5za1:A (2.52) BS01 9A0 ? GO:0003677 ... P51449 30301676 PDBbind: -logKd/Ki=7.52, IC50<0.030uM
    BindingDB: IC50=14nM
    21471 5za2:A (1.503) BS01 NXL 3.5.2.6 GO:0008800 ... Q9L387 29439972 MOAD: Kd=1700nM
    PDBbind: -logKd/Ki=5.77, Kd=1.7uM
    21472 5za7:U (1.7) BS01 HMX 3.4.21.73 GO:0004252 ... P00749 30130401 MOAD: Ki=1356nM
    PDBbind: -logKd/Ki=5.87, Ki=1356nM
    21473 5za8:U (1.9) BS01 27I 3.4.21.73 GO:0004252 ... P00749 30130401 MOAD: Ki=508nM
    PDBbind: -logKd/Ki=6.29, Ki=508nM
    BindingDB: Ki=508nM
    21474 5za9:U (1.62) BS01 50I 3.4.21.73 GO:0004252 ... P00749 30130401 MOAD: Ki=183nM
    PDBbind: -logKd/Ki=6.74, Ki=183nM
    BindingDB: Ki=183nM, IC50=530nM
    21475 5zae:U (1.73) BS01 EAU 3.4.21.73 GO:0004252 ... P00749 30130401 MOAD: Ki=156nM
    PDBbind: -logKd/Ki=6.81, Ki=156nM
    BindingDB: Ki=156nM
    21476 5zaf:U (1.65) BS01 28I 3.4.21.73 GO:0004252 ... P00749 30130401 MOAD: Ki=166nM
    PDBbind: -logKd/Ki=6.78, Ki=166nM
    BindingDB: Ki=166nM
    21477 5zag:U (1.95) BS01 94I 3.4.21.73 GO:0004252 ... P00749 30130401 MOAD: Ki=108nM
    PDBbind: -logKd/Ki=6.97, Ki=108nM
    BindingDB: Ki=108nM
    21478 5zah:U (2.98) BS01 30I 3.4.21.73 GO:0004252 ... P00749 30130401 PDBbind: -logKd/Ki=7.28, Ki=53nM
    BindingDB: Ki=53nM, IC50=39nM
    21479 5zaj:U (1.65) BS01 32I 3.4.21.73 GO:0004252 ... P00749 30130401 MOAD: Ki=42nM
    PDBbind: -logKd/Ki=7.38, Ki=42nM
    BindingDB: Ki=42nM
    21480 5zbz:A (1.3086) BS01 SAU 3.6.4.13 GO:0003676 ... P60842 31402318 MOAD: Kd=12.5uM
    PDBbind: -logKd/Ki=4.95, Kd=11.1uM
    21481 5zc5:U (1.9) BS01 09I 3.4.21.73 GO:0004252 ... P00749 30130401 MOAD: Ki=88nM
    PDBbind: -logKd/Ki=7.06, Ki=88nM
    BindingDB: Ki=88nM, IC50=430nM
    21482 5zc9:A (2.0) BS01 rna 3.6.4.13 GO:0000339 ... P60842 30595437 PDBbind: Kd=7.6uM
    21483 5zcu:C (2.413) BS01 PYV ? N/A Q6EN42 30941543 MOAD: ic50=2160nM
    PDBbind: -logKd/Ki=5.67, IC50=2160nM
    21484 5zd4:A (2.17) BS01 dna ? GO:0008643 ... P0AEY0
    Q8S307    		 30287951 PDBbind: Kd=12nM
    21485 5zd4:A (2.17) BS02 dna ? GO:0008643 ... P0AEY0
    Q8S307    		 30287951 PDBbind: Kd=12nM
    21486 5zd4:B (2.17) BS01 dna ? GO:0008643 ... P0AEY0
    Q8S307    		 30287951 PDBbind: Kd=12nM
    21487 5zd4:B (2.17) BS02 dna ? GO:0008643 ... P0AEY0
    Q8S307    		 30287951 PDBbind: Kd=12nM
    21488 5zd4:C (2.17) BS01 dna ? GO:0008643 ... P0AEY0
    Q8S307    		 30287951 PDBbind: Kd=12nM
    21489 5zd4:C (2.17) BS02 dna ? GO:0008643 ... P0AEY0
    Q8S307    		 30287951 PDBbind: Kd=12nM
    21490 5zd4:D (2.17) BS01 dna ? GO:0008643 ... P0AEY0
    Q8S307    		 30287951 PDBbind: Kd=12nM
    21491 5zd4:D (2.17) BS02 dna ? GO:0008643 ... P0AEY0
    Q8S307    		 30287951 PDBbind: Kd=12nM
    21492 5zdb:A (1.972) BS01 AR6 ? N/A Q9RZM4 30940816 PDBbind: -logKd/Ki=5.75, Kd=1.78uM
    21493 5zdc:C (1.979) BS01 AR6 ? N/A Q9RZM4 30940816 PDBbind: -logKd/Ki=5.75, Kd=1.78uM
    21494 5zdd:A (2.725) BS01 AR6 ? N/A Q9RZM4 30940816 PDBbind: -logKd/Ki=5.75, Kd=1.78uM
    21495 5zde:C (2.8) BS01 AR6 ? N/A Q9RZM4 30940816 PDBbind: -logKd/Ki=5.75, Kd=1.78uM
    21496 5zdf:A (2.504) BS01 AR6 ? N/A Q9RZM4 30940816 PDBbind: -logKd/Ki=5.70, Kd=1.98uM
    21497 5zdg:C (2.594) BS01 AR6 ? N/A Q9RZM4 30940816 PDBbind: -logKd/Ki=5.42, Kd=3.76uM
    21498 5ze6:A (2.5) BS01 HJX 2.5.1.90 GO:0004659 ... P0AD57 30730737 PDBbind: -logKd/Ki=3.35, IC50~450uM
    21499 5ze6:C (2.5) BS01 HJX 2.5.1.90 GO:0004659 ... P0AD57 30730737 PDBbind: -logKd/Ki=3.35, IC50~450uM
    21500 5zee:A (1.74) BS01 HAR 3.5.3.1 GO:0000050 ... C4LSS0 31199070 PDBbind: -logKd/Ki=2.80, IC50=1.57mM
    21501 5zef:A (2.01) BS01 NVA 3.5.3.1 GO:0000050 ... C4LSS0 31199070 PDBbind: -logKd/Ki=1.75, IC50=17.9mM
    21502 5zeq:A (1.9) BS04 9B3 3.4.17.2 GO:0004181 ... P09955 29859906 PDBbind: -logKd/Ki=8.82, IC50=1.5nM
    21503 5zfi:A (1.8) BS01 9C9 3.4.21.117 GO:0001533 ... Q91VE3 29884582 MOAD: ic50=1.2uM
    PDBbind: -logKd/Ki=5.92, IC50=1.2uM
    21504 5zfw:A (2.103) BS01 dna ? GO:0003677 ... Q9UBX2 30322619 PDBbind: Kd=66.23nM
    21505 5zfw:A (2.103) BS02 dna ? GO:0003677 ... Q9UBX2 30322619 PDBbind: Kd=66.23nM
    21506 5zfy:A (2.3) BS01 dna ? GO:0003677 ... Q9UBX2 30322619 PDBbind: Kd=68.03nM
    21507 5zfy:A (2.3) BS02 dna ? GO:0003677 ... Q9UBX2 30322619 PDBbind: Kd=68.03nM
    21508 5zfz:A (1.9) BS01 dna ? GO:0003677 ... Q9UBX2 30322619 PDBbind: Kd=58.14nM
    21509 5zfz:A (1.9) BS02 dna ? GO:0003677 ... Q9UBX2 30322619 PDBbind: Kd=58.14nM
    21510 5zh2:A (2.66) BS02 9CU 6.1.1.6 GO:0000049 ... W7JP72 29779382 PDBbind: -logKd/Ki=6.54, IC50=0.29uM
    21511 5zh3:A (2.86) BS02 9CF 6.1.1.6 GO:0000049 ... W7JP72 29779382 PDBbind: -logKd/Ki=4.67, IC50=21.3uM
    21512 5zh4:A (2.6) BS02 9CC 6.1.1.6 GO:0000049 ... W7JP72 29779382 PDBbind: -logKd/Ki=5.14, IC50=7.25uM
    21513 5zh5:A (3.08) BS02 9CX 6.1.1.6 GO:0000049 ... W7JP72 29779382 PDBbind: -logKd/Ki=5.33, IC50=4.64uM
    21514 5zhj:A (1.75) BS01 SAH 2.1.1.228 GO:0002939 ... P9WFY7 31442049 MOAD: Kd=10.1uM
    PDBbind: -logKd/Ki=5.00, Kd=10.1uM
    BindingDB: Kd=10100nM
    21515 5zk3:A (2.6) BS01 QNB ? GO:0004930 ... P08172
    P0ABE7    		 30420692 PDBbind: -logKd/Ki=8.74, Kd=1.8nM
    21516 5zk8:A (3.0) BS01 3C0 ? GO:0004930 ... P08172
    P0ABE7    		 30420692 PDBbind: -logKd/Ki=8.89, Kd=1.3nM
    21517 5zkb:A (2.95) BS01 82F ? GO:0004930 ... P08172
    P0ABE7    		 30420692 PDBbind: -logKd/Ki=8.70, Ki=2.0nM
    21518 5zkc:A (2.3) BS01 3C0 ? GO:0004930 ... P08172
    P0ABE7    		 30420692 MOAD: Kd=6.4nM
    PDBbind: -logKd/Ki=8.19, Kd=6.4nM
    21519 5zki:A (2.321) BS01 dna 3.1.30.- GO:0003676 ... Q9Y2C4 30949702 PDBbind: Kd=1.32uM
    21520 5zki:A (2.321) BS02 dna 3.1.30.- GO:0003676 ... Q9Y2C4 30949702 PDBbind: Kd=1.32uM
    21521 5zki:B (2.321) BS01 dna 3.1.30.- GO:0003676 ... Q9Y2C4 30949702 PDBbind: Kd=1.32uM
    21522 5zki:B (2.321) BS02 dna 3.1.30.- GO:0003676 ... Q9Y2C4 30949702 PDBbind: Kd=1.32uM
    21523 5zkj:A (2.798) BS01 rna 3.1.30.- GO:0003676 ... Q9Y2C4 30949702 PDBbind: Kd=0.19uM
    21524 5zkj:A (2.798) BS02 dna 3.1.30.- GO:0003676 ... Q9Y2C4 30949702 PDBbind: Kd=0.19uM
    21525 5zkj:B (2.798) BS01 rna 3.1.30.- GO:0003676 ... Q9Y2C4 30949702 PDBbind: Kd=0.19uM
    21526 5zkj:B (2.798) BS02 dna 3.1.30.- GO:0003676 ... Q9Y2C4 30949702 PDBbind: Kd=0.19uM
    21527 5zkl:A (1.951) BS01 dna ? GO:0003677 ... Q8DQG2 31713614 PDBbind: Kd=20.6nM
    21528 5zku:A (2.32) BS01 9F3 4.2.2.17 GO:0016740 ... B8HDZ1 N/A PDBbind: -logKd/Ki=4.30, Kd=50.5uM
    21529 5zku:A (2.32) BS02 9F3 4.2.2.17 GO:0016740 ... B8HDZ1 N/A PDBbind: -logKd/Ki=4.30, Kd=50.5uM
    21530 5zku:B (2.32) BS01 9F3 4.2.2.17 GO:0016740 ... B8HDZ1 N/A PDBbind: -logKd/Ki=4.30, Kd=50.5uM
    21531 5zku:B (2.32) BS02 9F3 4.2.2.17 GO:0016740 ... B8HDZ1 N/A PDBbind: -logKd/Ki=4.30, Kd=50.5uM
    21532 5zla:A (1.7) BS01 9F3 4.2.2.17 GO:0016740 ... B8HDZ1 N/A PDBbind: -logKd/Ki=4.30, Kd=50.1uM
    21533 5zla:A (1.7) BS02 9F3 4.2.2.17 GO:0016740 ... B8HDZ1 N/A PDBbind: -logKd/Ki=4.30, Kd=50.1uM
    21534 5zla:D (1.7) BS01 9F3 4.2.2.17 GO:0016740 ... B8HDZ1 N/A PDBbind: -logKd/Ki=4.30, Kd=50.1uM
    21535 5zla:D (1.7) BS02 9F3 4.2.2.17 GO:0016740 ... B8HDZ1 N/A PDBbind: -logKd/Ki=4.30, Kd=50.1uM
    21536 5zlf:A (2.845) BS01 B29 2.5.1.90 GO:0004659 ... P0AD57 30730737 PDBbind: -logKd/Ki=3.48, IC50~330uM
    21537 5zlf:B (2.845) BS01 B29 2.5.1.90 GO:0004659 ... P0AD57 30730737 PDBbind: -logKd/Ki=3.48, IC50~330uM
    21538 5zmd:A (3.3) BS01 dna 1.14.11.-
    1.14.11.53    		 GO:0001659 ... Q9C0B1 30718435 PDBbind: Kd=3.69uM
    21539 5zmd:A (3.3) BS02 dna 1.14.11.-
    1.14.11.53    		 GO:0001659 ... Q9C0B1 30718435 PDBbind: Kd=3.69uM
    21540 5zmd:C (3.3) BS01 dna 1.14.11.-
    1.14.11.53    		 GO:0001659 ... Q9C0B1 30718435 PDBbind: Kd=3.69uM
    21541 5zmd:C (3.3) BS02 dna 1.14.11.-
    1.14.11.53    		 GO:0001659 ... Q9C0B1 30718435 PDBbind: Kd=3.69uM
    21542 5zmd:E (3.3) BS01 dna 1.14.11.-
    1.14.11.53    		 GO:0001659 ... Q9C0B1 30718435 PDBbind: Kd=3.69uM
    21543 5zmd:E (3.3) BS02 dna 1.14.11.-
    1.14.11.53    		 GO:0001659 ... Q9C0B1 30718435 PDBbind: Kd=3.69uM
    21544 5zmd:G (3.3) BS01 dna 1.14.11.-
    1.14.11.53    		 GO:0001659 ... Q9C0B1 30718435 PDBbind: Kd=3.69uM
    21545 5zmd:G (3.3) BS02 dna 1.14.11.-
    1.14.11.53    		 GO:0001659 ... Q9C0B1 30718435 PDBbind: Kd=3.69uM
    21546 5zmo:A (1.69) BS01 dna ? N/A Q9L0M9 30409991 PDBbind: Kd=190nM
    21547 5zmo:A (1.69) BS02 dna ? N/A Q9L0M9 30409991 PDBbind: Kd=190nM
    21548 5znc:A (1.66) BS01 QI9 2.4.2.1
    2.4.2.44    		 GO:0003824 ... Q8T9Z7 30602534 MOAD: Kd=65nM
    PDBbind: -logKd/Ki=7.52, Kd=29.9nM
    21549 5zni:A (2.3) BS01 YMZ 2.4.2.1
    2.4.2.44    		 GO:0003824 ... Q8T9Z7 30602534 MOAD: Kd=11uM
    PDBbind: -logKd/Ki=4.39, Kd=40.3uM
    21550 5zo7:A (2.6) BS02 5C5 ? GO:0003777 ... P52732 31459302 PDBbind: -logKd/Ki=9.00, Kd<1nM
    BindingDB: IC50=14nM
    21551 5zo8:A (2.2) BS02 4C5 ? GO:0003777 ... P52732 31459302 PDBbind: -logKd/Ki=8.20, Kd=6.3nM
    BindingDB: Ki=22nM, IC50=28.5nM, EC50=230nM
    21552 5zo9:A (2.7) BS02 4C5 ? GO:0003777 ... P52732 31459302 PDBbind: -logKd/Ki=8.20, Kd=6.3nM
    BindingDB: Ki=22nM, IC50=28.5nM, EC50=230nM
    21553 5zt1:A (3.114) BS02 AGS 7.4.2.8 GO:0005524 ... P0A1C1 30013545 PDBbind: -logKd/Ki=4.67, Kd=21.23uM
    21554 5ztm:A (2.899) BS01 rna 3.6.4.13 GO:0003725 ... P24785 30649456 PDBbind: Kd=0.2uM
    21555 5ztm:B (2.899) BS01 rna 3.6.4.13 GO:0003725 ... P24785 30649456 PDBbind: Kd=0.2uM
    21556 5ztn:A (2.496) BS01 CUR 2.7.12.1 GO:0004672 ... Q92630 29987021 MOAD: ic50=5nM
    PDBbind: -logKd/Ki=8.30, IC50=5nM
    21557 5zu0:A (2.76) BS01 SAH 2.1.1.320 N/A Q54S83 30134162 PDBbind: -logKd/Ki=5.51, Kd=3.1uM
    21558 5zun:A (1.35) BS01 9JX 3.1.1.23 GO:0004622 ... Q99685 30251836 MOAD: ic50=0.64nM
    PDBbind: -logKd/Ki=9.19, IC50=0.64nM
    BindingDB: IC50=0.640000nM
    21559 5zux:A (-1.00) BS01 dna ? N/A O34857 30252102 PDBbind: Kd=7.9uM
    21560 5zux:A (-1.00) BS02 dna ? N/A O34857 30252102 PDBbind: Kd=7.9uM
    21561 5zva:A (2.3) BS01 dna 3.5.4.38 GO:0003824 ... Q8IUX4
    Q9HC16    		 N/A PDBbind: Kd=54.86uM
    21562 5zva:B (2.3) BS01 dna 3.5.4.38 GO:0003824 ... Q8IUX4
    Q9HC16    		 N/A PDBbind: Kd=54.86uM
    21563 5zvb:A (2.0) BS01 dna 3.5.4.38 GO:0003824 ... Q8IUX4
    Q9HC16    		 N/A PDBbind: Kd=40.38uM
    21564 5zvb:B (2.0) BS01 dna 3.5.4.38 GO:0003824 ... Q8IUX4
    Q9HC16    		 N/A PDBbind: Kd=40.38uM
    21565 5zwe:A (2.72) BS02 9K0 ? GO:0003677 ... P13053 29936834 PDBbind: -logKd/Ki=8.96, IC50=1.1nM
    21566 5zwf:A (2.1) BS02 9KR ? GO:0003677 ... P13053 29936834 PDBbind: -logKd/Ki=8.74, IC50=1.8nM
    21567 5zwh:A (2.38) BS03 9N9 ? GO:0003677 ... P13053 29936834 MOAD: ic50=1.9nM
    PDBbind: -logKd/Ki=8.72, IC50=1.9nM
    21568 5zwi:A (2.4) BS02 9KX ? GO:0003677 ... P13053 29936834 MOAD: ic50=2.3nM
    PDBbind: -logKd/Ki=8.64, IC50=2.3nM
    21569 5zxk:A (1.96) BS01 H6P ? N/A O00481 30902636 MOAD: Kd=3.3uM
    PDBbind: -logKd/Ki=5.48, Kd=3.3uM
    BindingDB: EC50=0.510000nM, IC50=16100nM, Kd=1540nM
    21570 5zz2:A (2.6) BS02 9M0 3.1.4.35 GO:0004114 ... O76074 30148362 PDBbind: -logKd/Ki=8.85, IC50=1.41nM
    BindingDB: IC50=1.4nM
    21571 5zz4:A (2.9) BS01 9M3 2.7.10.2 GO:0004672 ... Q06187 30216722 PDBbind: -logKd/Ki=9.17, IC50=0.67nM
    BindingDB: IC50=0.670000nM
    21572 5zzw:B (2.6) BS01 SAH 2.1.1.320 N/A Q54S83 30134162 PDBbind: -logKd/Ki=5.51, Kd=3.1uM
    21573 6a04:A (1.9) BS01 C2E ? GO:0002218 ... B8XX90 31167783 PDBbind: -logKd/Ki=5.21, Kd=6.18uM
    21574 6a04:B (1.9) BS01 C2E ? GO:0002218 ... B8XX90 31167783 MOAD: Kd~6uM
    PDBbind: -logKd/Ki=5.21, Kd=6.18uM
    21575 6a2h:A (2.3) BS01 dna ? GO:0003677 ... Q97ZE3 30499242 PDBbind: Kd=0.337uM
    21576 6a2h:A (2.3) BS02 dna ? GO:0003677 ... Q97ZE3 30499242 PDBbind: Kd=0.337uM
    21577 6a2i:A (2.4) BS01 dna ? GO:0003677 ... Q97ZE3 30499242 PDBbind: Kd=0.415uM
    21578 6a2i:A (2.4) BS02 dna ? GO:0003677 ... Q97ZE3 30499242 PDBbind: Kd=0.415uM
    21579 6a2i:B (2.4) BS01 dna ? GO:0003677 ... Q97ZE3 30499242 PDBbind: Kd=0.415uM
    21580 6a2i:B (2.4) BS02 dna ? GO:0003677 ... Q97ZE3 30499242 PDBbind: Kd=0.415uM
    21581 6a6j:A (2.255) BS01 rna ? GO:0003676 ... P67809 31399345 PDBbind: Kd=223nM
    21582 6a6j:C (2.255) BS01 rna ? GO:0003676 ... P67809 31399345 PDBbind: Kd=223nM
    21583 6a73:A (2.447) BS01 IHP 3.2.1.17 GO:0003796 ... P00720
    P61201    		 32047038 PDBbind: -logKd/Ki=6.48, Kd=0.33uM
    21584 6a80:A (1.56) BS01 CYS ? N/A C6XGT2 31063259 MOAD: Kd=0.000000064M
    PDBbind: -logKd/Ki=5.90, Kd=1.26uM
    21585 6a80:A (1.56) BS02 CYS ? N/A C6XGT2 31063259 MOAD: Kd=0.000000064M
    PDBbind: -logKd/Ki=5.90, Kd=1.26uM
    21586 6a80:B (1.56) BS01 CYS ? N/A C6XGT2 31063259 MOAD: Kd=0.000000064M
    PDBbind: -logKd/Ki=5.90, Kd=1.26uM
    21587 6a80:B (1.56) BS02 CYS ? N/A C6XGT2 31063259 MOAD: Kd=0.000000064M
    PDBbind: -logKd/Ki=5.90, Kd=1.26uM
    21588 6a94:A (2.9) BS01 ZOT ? GO:0004930 ... P0ABE7
    P28223    		 30723326 PDBbind: -logKd/Ki=7.40, Ki=40nM
    21589 6aa4:A (1.9) BS03 MKS 3.6.1.-
    3.6.1.56    		 GO:0001669 ... P36639 30771603 MOAD: ic50=0.47uM
    PDBbind: -logKd/Ki=6.33, IC50=0.47uM
    BindingDB: IC50=470nM
    21590 6aa5:A (1.901) BS01 MKU 3.6.1.-
    3.6.1.56    		 GO:0001669 ... P36639 30771603 MOAD: ic50=0.052uM
    PDBbind: -logKd/Ki=7.28, IC50=52nM
    21591 6aah:A (1.83) BS01 9T6 2.7.10.2 GO:0004672 ... P23458 30145050 PDBbind: -logKd/Ki=8.41, IC50=3.9nM
    BindingDB: IC50=3.9nM
    21592 6aah:B (1.83) BS01 9T6 2.7.10.2 GO:0004672 ... P23458 30145050 PDBbind: -logKd/Ki=8.41, IC50=3.9nM
    BindingDB: IC50=3.9nM
    21593 6aaj:A (2.37) BS01 9T6 2.7.10.2 GO:0004672 ... O60674 30145050 PDBbind: -logKd/Ki=8.30, IC50=5.0nM
    BindingDB: IC50=5.0nM
    21594 6aak:A (2.67) BS01 9T6 2.7.10.2 GO:0004672 ... P52333 30145050 PDBbind: -logKd/Ki=9.15, IC50=0.71nM
    BindingDB: IC50=0.700000nM
    21595 6aam:A (1.98) BS01 9T6 2.7.10.2 GO:0004672 ... P29597 30145050 PDBbind: -logKd/Ki=8.32, IC50=4.8nM
    BindingDB: IC50=4.8nM
    21596 6abk:A (1.58) BS03 9VF 6.1.1.26 GO:0000049 ... Q8PWY1 31031143 MOAD: Kd=11.3mM
    PDBbind: -logKd/Ki=1.95, Kd=11.3mM
    21597 6abp:A (1.67) BS01 ARA ? GO:0015407 ... P02924 2069949 MOAD: Kd=0.44uM
    PDBbind: -logKd/Ki=6.36, Kd=0.44uM
    21598 6abp:A (1.67) BS02 ARB ? GO:0015407 ... P02924 2069949 MOAD: Kd=0.44uM
    PDBbind: -logKd/Ki=6.36, Kd=0.44uM
    21599 6abx:A (1.7) BS01 FLC 2.3.3.16 GO:0004108 ... A4YGX6 30794680 MOAD: Ki=7.19mM
    PDBbind: -logKd/Ki=2.14, Ki=7.19mM
    21600 6abx:B (1.7) BS01 FLC 2.3.3.16 GO:0004108 ... A4YGX6 30794680 MOAD: Ki=7.19mM
    PDBbind: -logKd/Ki=2.14, Ki=7.19mM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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