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BioLiP
Download all results in tab-seperated text for 48291 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    48201 7rli:C (3.1) BS01 JDP 3.6.4.6 GO:0000502 ... P55072 34520757 BindingDB: IC50=1030nM, Ki=26nM
    48202 7rli:D (3.1) BS01 JDP 3.6.4.6 GO:0000502 ... P55072 34520757 BindingDB: IC50=1030nM, Ki=26nM
    48203 7rli:E (3.1) BS01 JDP 3.6.4.6 GO:0000502 ... P55072 34520757 BindingDB: IC50=1030nM, Ki=26nM
    48204 7rli:F (3.1) BS01 JDP 3.6.4.6 GO:0000502 ... P55072 34520757 BindingDB: IC50=1030nM, Ki=26nM
    48205 7rli:G (3.1) BS01 JDP 3.6.4.6 GO:0000502 ... P55072 34520757 BindingDB: IC50=1030nM, Ki=26nM
    48206 7rli:H (3.1) BS01 JDP 3.6.4.6 GO:0000502 ... P55072 34520757 BindingDB: IC50=1030nM, Ki=26nM
    48207 7rli:I (3.1) BS01 JDP 3.6.4.6 GO:0000502 ... P55072 34520757 BindingDB: IC50=1030nM, Ki=26nM
    48208 7rli:J (3.1) BS01 JDP 3.6.4.6 GO:0000502 ... P55072 34520757 BindingDB: IC50=1030nM, Ki=26nM
    48209 7rli:K (3.1) BS01 JDP 3.6.4.6 GO:0000502 ... P55072 34520757 BindingDB: IC50=1030nM, Ki=26nM
    48210 7rli:L (3.1) BS01 JDP 3.6.4.6 GO:0000502 ... P55072 34520757 BindingDB: IC50=1030nM, Ki=26nM
    48211 7rlj:A (3.8) BS02 JDP 3.6.4.6 GO:0000502 ... P55072 34520757 BindingDB: IC50=1030nM, Ki=26nM
    48212 7rlj:B (3.8) BS02 JDP 3.6.4.6 GO:0000502 ... P55072 34520757 BindingDB: IC50=1030nM, Ki=26nM
    48213 7rlj:C (3.8) BS02 JDP 3.6.4.6 GO:0000502 ... P55072 34520757 BindingDB: IC50=1030nM, Ki=26nM
    48214 7rlj:D (3.8) BS02 JDP 3.6.4.6 GO:0000502 ... P55072 34520757 BindingDB: IC50=1030nM, Ki=26nM
    48215 7rlj:E (3.8) BS02 JDP 3.6.4.6 GO:0000502 ... P55072 34520757 BindingDB: IC50=1030nM, Ki=26nM
    48216 7rlj:F (3.8) BS02 JDP 3.6.4.6 GO:0000502 ... P55072 34520757 BindingDB: IC50=1030nM, Ki=26nM
    48217 7rlj:G (3.8) BS02 JDP 3.6.4.6 GO:0000502 ... P55072 34520757 BindingDB: IC50=1030nM, Ki=26nM
    48218 7rlj:H (3.8) BS02 JDP 3.6.4.6 GO:0000502 ... P55072 34520757 BindingDB: IC50=1030nM, Ki=26nM
    48219 7rlj:I (3.8) BS02 JDP 3.6.4.6 GO:0000502 ... P55072 34520757 BindingDB: IC50=1030nM, Ki=26nM
    48220 7rlj:J (3.8) BS02 JDP 3.6.4.6 GO:0000502 ... P55072 34520757 BindingDB: IC50=1030nM, Ki=26nM
    48221 7rlj:K (3.8) BS02 JDP 3.6.4.6 GO:0000502 ... P55072 34520757 BindingDB: IC50=1030nM, Ki=26nM
    48222 7rlj:L (3.8) BS02 JDP 3.6.4.6 GO:0000502 ... P55072 34520757 BindingDB: IC50=1030nM, Ki=26nM
    48223 7s3k:A (1.9) BS01 Z26 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 35434531 BindingDB: IC50=1350nM
    48224 7s3s:A (2.0) BS01 860 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 35434531 BindingDB: IC50=728nM
    48225 7slv:A (2.13) BS01 9TC 3.5.1.92 GO:0002526 ... O95497 34967602 BindingDB: IC50=7.66nM
    48226 7slx:A (2.35) BS01 9SS 3.5.1.92 GO:0002526 ... O95497 34967602 BindingDB: IC50=1177nM
    48227 7sly:A (2.17) BS01 9S5 3.5.1.92 GO:0002526 ... O95497 34967602 BindingDB: IC50=0.242nM
    48228 7std:A (1.8) BS02 CRP 4.2.1.94 GO:0005575 ... P56221 10382670 MOAD: Ki=19pM
    PDBbind: -logKd/Ki=10.72, Ki=19pM
    BindingDB: Ki=30nM
    48229 7std:B (1.8) BS01 CRP 4.2.1.94 GO:0005575 ... P56221 10382670 MOAD: Ki=19pM
    BindingDB: Ki=30nM
    48230 7std:C (1.8) BS02 CRP 4.2.1.94 GO:0005575 ... P56221 10382670 MOAD: Ki=19pM
    BindingDB: Ki=30nM
    48231 7svd:A (2.7) BS07 VX8 5.6.1.6 GO:0005254 ... P13569 34995514 BindingDB: EC50=2600nM
    48232 7svr:A (3.9) BS02 VX8 5.6.1.6 GO:0005254 ... P13569 34995514 BindingDB: EC50=2600nM
    48233 7tob:A (2.05) BS01 K36 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 35292745 BindingDB: IC50=190nM
    48234 7upj:A (2.0) BS01 INU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 9089336 MOAD: Ki=3.2nM
    PDBbind: -logKd/Ki=8.49, Ki=3.2nM
    48235 7upj:B (2.0) BS01 INU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 9089336 PDBbind: -logKd/Ki=8.49, Ki=3.2nM
    48236 7vfw:A (3.3) BS05 6I7 ? GO:0001540 ... Q00975 34731621 BindingDB: IC50=16nM
    48237 7vkn:A (2.7) BS01 7GI 2.7.10.1 GO:0004672 ... P04629 34625502 BindingDB: IC50=0.400000nM
    48238 7vko:A (2.9) BS01 7GI 2.7.10.1 GO:0004672 ... P04629 34625502 BindingDB: IC50=0.400000nM
    48239 7vnp:A (2.79) BS03 7YV ? GO:0005216 ... P56696 34767770 BindingDB: EC50=1600nM
    48240 7vnp:A (2.79) BS04 7YV ? GO:0005216 ... P56696 34767770 BindingDB: EC50=1600nM
    48241 7vnp:C (2.79) BS02 7YV ? GO:0005216 ... P56696 34767770 BindingDB: EC50=1600nM
    48242 7vnp:C (2.79) BS05 7YV ? GO:0005216 ... P56696 34767770 BindingDB: EC50=1600nM
    48243 7vnp:E (2.79) BS02 7YV ? GO:0005216 ... P56696 34767770 BindingDB: EC50=1600nM
    48244 7vnp:E (2.79) BS05 7YV ? GO:0005216 ... P56696 34767770 BindingDB: EC50=1600nM
    48245 7vnp:G (2.79) BS01 7YV ? GO:0005216 ... P56696 34767770 BindingDB: EC50=1600nM
    48246 7vnp:G (2.79) BS03 7YV ? GO:0005216 ... P56696 34767770 BindingDB: EC50=1600nM
    48247 7vnq:A (2.96) BS01 7YV ? GO:0005216 ... P56696 34767770 BindingDB: EC50=1600nM
    48248 7vnq:A (2.96) BS02 7YV ? GO:0005216 ... P56696 34767770 BindingDB: EC50=1600nM
    48249 7vnq:C (2.96) BS01 7YV ? GO:0005216 ... P56696 34767770 BindingDB: EC50=1600nM
    48250 7vnq:C (2.96) BS02 7YV ? GO:0005216 ... P56696 34767770 BindingDB: EC50=1600nM
    48251 7vnq:E (2.96) BS01 7YV ? GO:0005216 ... P56696 34767770 BindingDB: EC50=1600nM
    48252 7vnq:E (2.96) BS02 7YV ? GO:0005216 ... P56696 34767770 BindingDB: EC50=1600nM
    48253 7vnq:G (2.96) BS01 7YV ? GO:0005216 ... P56696 34767770 BindingDB: EC50=1600nM
    48254 7vnq:G (2.96) BS02 7YV ? GO:0005216 ... P56696 34767770 BindingDB: EC50=1600nM
    48255 7vnr:A (2.8) BS01 7YV ? GO:0005216 ... P56696 34767770 BindingDB: EC50=1600nM
    48256 7vnr:A (2.8) BS02 7YV ? GO:0005216 ... P56696 34767770 BindingDB: EC50=1600nM
    48257 7vnr:C (2.8) BS01 7YV ? GO:0005216 ... P56696 34767770 BindingDB: EC50=1600nM
    48258 7vnr:C (2.8) BS02 7YV ? GO:0005216 ... P56696 34767770 BindingDB: EC50=1600nM
    48259 7vnr:E (2.8) BS01 7YV ? GO:0005216 ... P56696 34767770 BindingDB: EC50=1600nM
    48260 7vnr:E (2.8) BS02 7YV ? GO:0005216 ... P56696 34767770 BindingDB: EC50=1600nM
    48261 7vnr:G (2.8) BS01 7YV ? GO:0005216 ... P56696 34767770 BindingDB: EC50=1600nM
    48262 7vnr:G (2.8) BS02 7YV ? GO:0005216 ... P56696 34767770 BindingDB: EC50=1600nM
    48263 7vsi:A (2.95) BS01 7R3 ? GO:0000017 ... P31639 34880493 BindingDB: IC50=3.1nM, EC50=3.0nM
    48264 7wf7:A (3.4) BS01 S1P ? GO:0001525 ... P21453 34937912 BindingDB: IC50=1.40nM, EC50=4.3nM
    48265 830c:A (1.6) BS04 RS1 3.4.24.- GO:0004222 ... P45452 10074939 MOAD: Ki=0.52nM
    PDBbind: -logKd/Ki=9.28, Ki=0.52nM
    BindingDB: IC50=0.010000nM, Ki=0.52nM
    48266 830c:B (1.6) BS04 RS1 3.4.24.- GO:0004222 ... P45452 10074939 MOAD: Ki=0.52nM
    BindingDB: IC50=0.010000nM, Ki=0.52nM
    48267 8a3h:A (0.97) BS01 IDC 3.2.1.4 GO:0000272 ... O85465 N/A MOAD: Ki=88uM
    PDBbind: -logKd/Ki=4.06, Ki=88uM
    48268 8abp:A (1.49) BS01 GLA ? GO:0015407 ... P02924 2069949 MOAD: Kd=0.01uM
    PDBbind: -logKd/Ki=8.00, Kd=0.010uM
    48269 8abp:A (1.49) BS02 GAL ? GO:0015407 ... P02924 2069949 MOAD: Kd=0.01uM
    48270 8cat:A (2.5) BS02 NDP 1.11.1.6 GO:0004096 ... P00432 3856839 MOAD: Kd<10nM
    48271 8cat:B (2.5) BS02 NDP 1.11.1.6 GO:0004096 ... P00432 3856839 MOAD: Kd<10nM
    48272 8cpa:A (2.0) BS02 AGF 3.4.17.1 GO:0004181 ... P00730 1868092 MOAD: Ki=710pM
    PDBbind: -logKd/Ki=9.15, Ki=710pM
    48273 8gpb:A (2.2) BS02 AMP 2.4.1.1 GO:0000166 ... P00489 1900534 MOAD: Kd=250uM
    PDBbind: -logKd/Ki=3.60, Kd=0.25mM
    48274 8gpb:A (2.2) BS03 AMP 2.4.1.1 GO:0000166 ... P00489 1900534 MOAD: Kd=250uM
    PDBbind: -logKd/Ki=3.60, Kd=0.25mM
    48275 8icj:A (3.2) BS03 TTP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119 BindingDB: IC50=1400nM
    48276 8ico:A (2.7) BS04 AZT 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119 BindingDB: IC50=16000nM
    48277 8icw:A (3.3) BS03 TTP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119 BindingDB: IC50=1400nM
    48278 8icx:A (3.0) BS04 TTP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119 BindingDB: IC50=1400nM
    48279 8icy:A (3.1) BS03 TTP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119 BindingDB: IC50=1400nM
    48280 8nse:A (2.25) BS04 NRG 1.14.13.39 GO:0004517 ... P29473 11695891 BindingDB: IC50=1200nM, Ki=750nM
    48281 8nse:B (2.25) BS05 NRG 1.14.13.39 GO:0004517 ... P29473 11695891 BindingDB: IC50=1200nM, Ki=750nM
    48282 966c:A (1.9) BS06 RS2 3.4.24.7 GO:0004222 ... P03956 10074939 MOAD: Ki=23nM
    PDBbind: -logKd/Ki=7.64, Ki=23nM
    BindingDB: Ki=23nM
    48283 9abp:A (1.97) BS01 GLA ? GO:0015407 ... P02924 2204627 MOAD: Kd=0.01uM
    PDBbind: -logKd/Ki=8.00, Kd=0.01uM
    48284 9abp:A (1.97) BS02 GAL ? GO:0015407 ... P02924 2204627 MOAD: Kd=0.01uM
    48285 9hvp:A (2.8) BS01 0E9 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P12497 2200122 PDBbind: -logKd/Ki=8.35, Ki=4.5nM
    48286 9hvp:B (2.8) BS01 0E9 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P12497 2200122 PDBbind: -logKd/Ki=8.35, Ki=4.5nM
    48287 9icd:A (2.5) BS01 NAP 1.1.1.42 GO:0000287 ... P08200 1888729 MOAD: Kd=125uM
    PDBbind: -logKd/Ki=3.90, Kd=125uM
    48288 9icu:A (2.9) BS03 TTP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119 BindingDB: IC50=1400nM
    48289 9nse:A (2.24) BS04 ISU 1.14.13.39 GO:0004517 ... P29473 11051558 MOAD: Ki=0.039uM
    48290 9nse:B (2.24) BS05 ISU 1.14.13.39 GO:0004517 ... P29473 11051558 MOAD: Ki=0.039uM
    48291 9nse:B (2.24) BS06 ISU 1.14.13.39 GO:0004517 ... P29473 11051558 MOAD: Ki=0.039uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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