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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 48291 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1601 1hw5:A (1.82) BS01 CMP ? GO:0003677 ... P0ACJ8 11124966 Manual survey: Kb=2.0+-0.3M^-1 (11124966)
    1602 1hw5:A (1.82) BS02 CMP ? GO:0003677 ... P0ACJ8 11124966 Manual survey: Kb=2.0+-0.3M^-1 (11124966)
    1603 1hw5:B (1.82) BS01 CMP ? GO:0003677 ... P0ACJ8 11124966 Manual survey: Kb=2.0+-0.3M^-1 (11124966)
    1604 1hw5:B (1.82) BS02 CMP ? GO:0003677 ... P0ACJ8 11124966 Manual survey: Kb=2.0+-0.3M^-1 (11124966)
    1605 1hw8:A (2.1) BS01 114 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=23nM
    1606 1hw8:A (2.1) BS02 114 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=23nM
    1607 1hw8:B (2.1) BS01 114 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=23nM
    1608 1hw8:B (2.1) BS02 114 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=23nM
    1609 1hw8:C (2.1) BS01 114 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=23nM
    1610 1hw8:C (2.1) BS02 114 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=23nM
    1611 1hw8:D (2.1) BS01 114 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=23nM
    1612 1hw8:D (2.1) BS02 114 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=23nM
    1613 1hw9:A (2.33) BS02 SIM 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=11nM
    1614 1hw9:A (2.33) BS04 SIM 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=11nM
    1615 1hw9:B (2.33) BS02 SIM 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=11nM
    1616 1hw9:B (2.33) BS05 SIM 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=11nM
    1617 1hw9:C (2.33) BS02 SIM 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=11nM
    1618 1hw9:C (2.33) BS03 SIM 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=11nM
    1619 1hwi:A (2.3) BS01 115 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=28nM
    BindingDB: IC50=28nM
    1620 1hwi:A (2.3) BS03 115 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=28nM
    BindingDB: IC50=28nM
    1621 1hwi:B (2.3) BS01 115 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=28nM
    BindingDB: IC50=28nM
    1622 1hwi:B (2.3) BS04 115 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=28nM
    BindingDB: IC50=28nM
    1623 1hwi:C (2.3) BS01 115 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=28nM
    BindingDB: IC50=28nM
    1624 1hwi:C (2.3) BS02 115 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=28nM
    BindingDB: IC50=28nM
    1625 1hwi:D (2.3) BS01 115 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=28nM
    BindingDB: IC50=28nM
    1626 1hwi:D (2.3) BS03 115 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=28nM
    BindingDB: IC50=28nM
    1627 1hwj:A (2.26) BS03 116 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=10nM
    1628 1hwj:A (2.26) BS04 116 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=10nM
    1629 1hwj:B (2.26) BS03 116 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=10nM
    1630 1hwj:B (2.26) BS05 116 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=10nM
    1631 1hwj:C (2.26) BS03 116 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=10nM
    1632 1hwj:C (2.26) BS04 116 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=10nM
    1633 1hwj:D (2.26) BS02 116 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=10nM
    1634 1hwj:D (2.26) BS04 116 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=10nM
    1635 1hwk:A (2.22) BS04 117 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=8nM
    BindingDB: IC50=6nM, Ki=6.2nM
    1636 1hwk:A (2.22) BS05 117 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=8nM
    BindingDB: IC50=6nM, Ki=6.2nM
    1637 1hwk:B (2.22) BS03 117 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=8nM
    BindingDB: IC50=6nM, Ki=6.2nM
    1638 1hwk:B (2.22) BS05 117 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=8nM
    BindingDB: IC50=6nM, Ki=6.2nM
    1639 1hwk:C (2.22) BS01 117 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=8nM
    BindingDB: IC50=6nM, Ki=6.2nM
    1640 1hwk:C (2.22) BS02 117 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=8nM
    BindingDB: IC50=6nM, Ki=6.2nM
    1641 1hwk:D (2.22) BS01 117 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=8nM
    BindingDB: IC50=6nM, Ki=6.2nM
    1642 1hwk:D (2.22) BS03 117 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=8nM
    BindingDB: IC50=6nM, Ki=6.2nM
    1643 1hwl:A (2.1) BS03 FBI 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=5nM
    1644 1hwl:A (2.1) BS04 FBI 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=5nM
    1645 1hwl:B (2.1) BS03 FBI 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=5nM
    1646 1hwl:B (2.1) BS04 FBI 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=5nM
    1647 1hwl:C (2.1) BS02 FBI 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=5nM
    1648 1hwl:C (2.1) BS03 FBI 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=5nM
    1649 1hwl:D (2.1) BS02 FBI 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=5nM
    1650 1hwl:D (2.1) BS03 FBI 1.1.1.34 GO:0004420 ... P04035 11349148 MOAD: ic50=5nM
    1651 1hwr:A (1.8) BS01 216 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04585 9575185 PDBbind: -logKd/Ki=8.33, Ki=4.70nM
    1652 1hwr:B (1.8) BS01 216 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04585 9575185 MOAD: Ki=4.7nM
    PDBbind: -logKd/Ki=8.33, Ki=4.70nM
    1653 1hww:A (1.87) BS02 SWA 3.2.1.114 GO:0000139 ... Q24451 11406577 MOAD: ic50=20nM
    PDBbind: -logKd/Ki=7.70, IC50=20nM
    BindingDB: IC50=37nM, Ki=3.0nM
    1654 1hxb:A (2.3) BS01 ROC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04585 1956054 MOAD: Ki=0.12nM
    PDBbind: -logKd/Ki=9.92, Ki=0.12nM
    1655 1hxb:B (2.3) BS01 ROC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04585 1956054 PDBbind: -logKd/Ki=9.92, Ki=0.12nM
    1656 1hxk:A (1.5) BS02 DMJ 3.2.1.114 GO:0000139 ... Q24451 11406577 MOAD: ic50=400uM
    PDBbind: -logKd/Ki=3.40, IC50=400uM
    1657 1hxw:A (1.8) BS01 RIT 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P12499 7708670 PDBbind: -logKd/Ki=10.82, Ki=15pM
    1658 1hxw:B (1.8) BS01 RIT 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P12499 7708670 MOAD: Ki=15pM
    PDBbind: -logKd/Ki=10.82, Ki=15pM
    1659 1hy7:B (1.5) BS06 MBS 3.4.24.17 GO:0004222 ... P08254 11297453 MOAD: ic50=4090nM
    PDBbind: -logKd/Ki=5.39, IC50=4.09uM
    BindingDB: IC50=4090nM
    1660 1hyo:A (1.3) BS04 HBU 3.7.1.2 GO:0003824 ... P35505 11154690 MOAD: Ki=84.8uM
    1661 1hyo:B (1.3) BS04 HBU 3.7.1.2 GO:0003824 ... P35505 11154690 MOAD: Ki=84.8uM
    1662 1hyv:A (1.7) BS01 TTA 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 11264582 MOAD: ic50>5mM
    PDBbind: -logKd/Ki=2.30, IC50>5mM
    1663 1hzz:A (2.5) BS01 NAD 7.1.1.1 GO:0000166 ... Q2RSB2 11250201 MOAD: Kd=30uM
    1664 1i00:A (2.5) BS02 D16 2.1.1.45 GO:0000900 ... P04818 11316879 MOAD: Ki=0.46uM
    PDBbind: -logKd/Ki=6.34, Ki=0.46uM
    BindingDB: IC50=29000nM
    1665 1i00:B (2.5) BS03 D16 2.1.1.45 GO:0000900 ... P04818 11316879 MOAD: Ki=0.46uM
    PDBbind: -logKd/Ki=6.34, Ki=0.46uM
    BindingDB: IC50=29000nM
    1666 1i1e:A (2.5) BS01 DM2 3.4.24.69 GO:0004222 ... P10844 11679763 MOAD: Kd=9.4uM
    PDBbind: -logKd/Ki=5.03, Kd=9.4uM
    1667 1i2z:A (2.8) BS02 654 1.3.1.9 GO:0004318 ... P0AEK4 11514139 BindingDB: IC50=13700nM
    1668 1i2z:B (2.8) BS02 654 1.3.1.9 GO:0004318 ... P0AEK4 11514139 BindingDB: IC50=13700nM
    1669 1i30:A (2.4) BS02 826 1.3.1.9 GO:0004318 ... P0AEK4 11527706 BindingDB: IC50=4200nM
    1670 1i30:B (2.4) BS02 826 1.3.1.9 GO:0004318 ... P0AEK4 11527706 BindingDB: IC50=4200nM
    1671 1i32:A (2.6) BS01 NMD 1.2.1.12 GO:0004365 ... Q27890 11371162 PDBbind: -logKd/Ki=5.70, IC50=2uM
    1672 1i32:B (2.6) BS01 NMD 1.2.1.12 GO:0004365 ... Q27890 11371162 PDBbind: -logKd/Ki=5.70, IC50=2uM
    1673 1i33:A (3.0) BS01 TND 1.2.1.12 GO:0004365 ... Q27890 11371162 PDBbind: -logKd/Ki=4.12, IC50=75uM
    1674 1i33:B (3.0) BS01 TND 1.2.1.12 GO:0004365 ... Q27890 11371162 PDBbind: -logKd/Ki=4.12, IC50=75uM
    1675 1i33:B (3.0) BS02 TND 1.2.1.12 GO:0004365 ... Q27890 11371162 PDBbind: -logKd/Ki=4.12, IC50=75uM
    1676 1i37:A (2.0) BS01 DHT ? N/A P15207 11320241 PDBbind: -logKd/Ki=9.57, Ki=0.27nM
    BindingDB: IC50=3.1nM, EC50=0.97nM, Ki=0.43nM
    1677 1i38:A (2.0) BS01 DHT ? N/A P15207 11320241 BindingDB: IC50=3.1nM, EC50=0.97nM, Ki=0.43nM
    1678 1i41:A (3.2) BS01 HEN 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531 PDBbind: -logKd/Ki=4.57, Ki=27uM
    1679 1i41:A (3.2) BS02 HEN 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531 PDBbind: -logKd/Ki=4.57, Ki=27uM
    1680 1i41:C (3.2) BS01 HEN 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531 PDBbind: -logKd/Ki=4.57, Ki=27uM
    1681 1i41:C (3.2) BS02 HEN 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531 PDBbind: -logKd/Ki=4.57, Ki=27uM
    1682 1i43:A (3.1) BS02 PMC 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531 PDBbind: -logKd/Ki=3.70, Ki=200uM
    1683 1i43:A (3.1) BS04 PMC 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531 PDBbind: -logKd/Ki=3.70, Ki=200uM
    1684 1i43:C (3.1) BS02 PMC 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531 PDBbind: -logKd/Ki=3.70, Ki=200uM
    1685 1i43:C (3.1) BS04 PMC 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531 PDBbind: -logKd/Ki=3.70, Ki=200uM
    1686 1i48:A (3.25) BS02 CCO 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531 PDBbind: -logKd/Ki=5.70, Ki=2.0uM
    1687 1i48:C (3.25) BS03 CCO 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531 PDBbind: -logKd/Ki=5.70, Ki=2.0uM
    1688 1i4d:D (2.5) BS01 GDP 3.6.5.2 GO:0001764 ... P63000 11346801 MOAD: Kd=3uM
    1689 1i5d:A (2.9) BS01 128 2.7.13.3 GO:0016310 ... Q56310 11276258 PDBbind: -logKd/Ki=8.00, Kd<0.010uM
    1690 1i5r:A (1.6) BS01 HYC 1.1.1.51
    1.1.1.62    		 GO:0003824 ... P14061 12223444 MOAD: Ki=3nM
    PDBbind: -logKd/Ki=8.52, Ki=3.0nM
    BindingDB: IC50=52nM, Ki=3nM
    1691 1i6v:C (3.3) BS01 RFP 2.7.7.6 GO:0000428 ... Q9KWU7 11290327 PDBbind: -logKd/Ki=5.00, Ki=10uM
    1692 1i72:A (2.0) BS01 MAO 4.1.1.50 GO:0004014 ... P17707 11583147 PDBbind: -logKd/Ki=7.26, IC50=55nM
    BindingDB: IC50=55nM
    1693 1i72:B (2.0) BS01 MAO 4.1.1.50 GO:0004014 ... P17707 11583147 PDBbind: -logKd/Ki=7.26, IC50=55nM
    BindingDB: IC50=55nM
    1694 1i7c:A (2.4) BS02 MGB 4.1.1.50 GO:0004014 ... P17707 11583147 MOAD: ic50=0.4uM
    PDBbind: -logKd/Ki=6.40, IC50=0.4uM
    1695 1i7c:B (2.4) BS01 MGB 4.1.1.50 GO:0004014 ... P17707 11583147 PDBbind: -logKd/Ki=6.40, IC50=0.4uM
    1696 1i7g:A (2.2) BS01 AZ2 ? GO:0003677 ... Q07869 11587644 MOAD: ic50=1uM
    PDBbind: -logKd/Ki=6.00, IC50=1.0uM
    BindingDB: EC50=820nM, Ki=1000nM
    1697 1i7i:A (2.35) BS01 AZ2 ? GO:0003677 ... P37231 11587644 PDBbind: -logKd/Ki=6.70, IC50=0.2uM
    BindingDB: EC50=704nM, Ki=18nM
    1698 1i7i:B (2.35) BS01 AZ2 ? GO:0003677 ... P37231 11587644 BindingDB: EC50=704nM, Ki=18nM
    1699 1i7m:A (2.24) BS02 CG 4.1.1.50 GO:0004014 ... P17707 11583147 MOAD: ic50=0.23nM
    PDBbind: -logKd/Ki=9.64, IC50=0.23nM
    1700 1i7m:B (2.24) BS01 CG 4.1.1.50 GO:0004014 ... P17707 11583147 PDBbind: -logKd/Ki=9.64, IC50=0.23nM
    1701 1i7m:D (2.24) BS01 CG 4.1.1.50 GO:0004014 ... P17707 11583147 MOAD: ic50=0.23nM
    1702 1i7z:A (2.3) BS01 COC ? GO:0002250 ... P01834 11469854 MOAD: Kd=0.4uM
    PDBbind: -logKd/Ki=6.40, Kd=0.4uM
    1703 1i7z:B (2.3) BS01 COC ? N/A P01857 11469854 PDBbind: -logKd/Ki=6.40, Kd=0.4uM
    1704 1i7z:C (2.3) BS01 COC ? GO:0002250 ... P01834 11469854 MOAD: Kd=0.4uM
    1705 1i80:A (2.0) BS02 9HX 2.4.2.1 GO:0003824 ... P9WP01 11444966 MOAD: Kd=0.39uM
    1706 1i80:B (2.0) BS01 9HX 2.4.2.1 GO:0003824 ... P9WP01 11444966 MOAD: Kd=0.39uM
    PDBbind: -logKd/Ki=6.41, Kd=0.39uM
    1707 1i80:C (2.0) BS01 9HX 2.4.2.1 GO:0003824 ... P9WP01 11444966 MOAD: Kd=0.39uM
    PDBbind: -logKd/Ki=6.41, Kd=0.39uM
    1708 1i8j:A (1.9) BS02 DSB 4.2.1.24 GO:0000287 ... P0ACB2 11444968 PDBbind: -logKd/Ki=4.41, IC50=39uM
    1709 1i8m:A (2.1) BS01 dna ? N/A Q7TS98 11733999 PDBbind: Kd=2700nM
    1710 1i8m:B (2.1) BS01 dna ? N/A Q924Q6 11733999 PDBbind: Kd=2700nM
    1711 1i8m:B (2.1) BS02 dna ? N/A Q924Q6 11733999 PDBbind: Kd=2700nM
    1712 1i8m:H (2.1) BS01 dna ? N/A Q924Q6 11733999 PDBbind: Kd=2700nM
    1713 1i8m:L (2.1) BS01 dna ? N/A Q7TS98 11733999 PDBbind: Kd=2700nM
    1714 1i8z:A (1.93) BS02 INL 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11831900 MOAD: ic50=1.27nM
    PDBbind: -logKd/Ki=8.90, IC50=1.27nM
    BindingDB: Ki=0.15nM, IC50=1.3nM
    1715 1i90:A (2.0) BS02 INM 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11831900 MOAD: ic50=1.28nM
    PDBbind: -logKd/Ki=8.89, IC50=1.28nM
    1716 1i91:A (2.0) BS02 INQ 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11831900 MOAD: ic50=1.15nM
    PDBbind: -logKd/Ki=8.94, IC50=1.15nM
    BindingDB: Ki=0.15nM, IC50=1.2nM
    1717 1i9l:A (1.93) BS02 INV 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11572683 MOAD: Kd=3.3nM
    PDBbind: -logKd/Ki=8.48, Kd=3.3nM
    1718 1i9l:A (1.93) BS03 INV 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11572683 MOAD: Kd=3.3nM
    PDBbind: -logKd/Ki=8.48, Kd=3.3nM
    1719 1i9m:A (1.84) BS02 INW 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11572683 MOAD: Kd=3.3nM
    PDBbind: -logKd/Ki=8.48, Kd=3.3nM
    1720 1i9m:A (1.84) BS03 INW 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11572683 MOAD: Kd=3.3nM
    PDBbind: -logKd/Ki=8.48, Kd=3.3nM
    1721 1i9n:A (1.86) BS02 IOA 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11572683 MOAD: Kd=2.2nM
    PDBbind: -logKd/Ki=8.66, Kd=2.2nM
    1722 1i9o:A (1.86) BS02 IOC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11572683 MOAD: Kd=3.8nM
    PDBbind: -logKd/Ki=8.42, Kd=3.8nM
    BindingDB: Kd=2.3nM
    1723 1i9o:A (1.86) BS03 IOC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11572683 MOAD: Kd=3.8nM
    PDBbind: -logKd/Ki=8.42, Kd=3.8nM
    BindingDB: Kd=2.3nM
    1724 1i9p:A (1.92) BS02 IOE 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11572683 MOAD: Kd=3.9nM
    PDBbind: -logKd/Ki=8.41, Kd=3.9nM
    1725 1i9q:A (1.8) BS02 IOF 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11572683 MOAD: Kd=3.9nM
    1726 1i9q:A (1.8) BS03 IOF 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11572683 MOAD: Kd=3.9nM
    1727 1ia1:A (1.7) BS02 TQ3 1.5.1.3 GO:0004146 ... P22906 11520201 MOAD: ic50=0.034uM
    BindingDB: IC50=34nM
    1728 1ia1:B (1.7) BS02 TQ3 1.5.1.3 GO:0004146 ... P22906 11520201 MOAD: ic50=0.034uM
    BindingDB: IC50=34nM
    1729 1ia2:A (1.82) BS02 TQ4 1.5.1.3 GO:0004146 ... P22906 11520201 MOAD: ic50=0.023uM
    BindingDB: IC50=23nM
    1730 1ia2:B (1.82) BS02 TQ4 1.5.1.3 GO:0004146 ... P22906 11520201 MOAD: ic50=0.023uM
    BindingDB: IC50=23nM
    1731 1ia3:A (1.78) BS02 TQ5 1.5.1.3 GO:0004146 ... P22906 11520201 MOAD: ic50=8nM
    BindingDB: IC50=8nM
    1732 1ia3:B (1.78) BS02 TQ5 1.5.1.3 GO:0004146 ... P22906 11520201 MOAD: ic50=8nM
    BindingDB: IC50=8nM
    1733 1ia4:A (1.85) BS02 TQ6 1.5.1.3 GO:0004146 ... P22906 11520201 MOAD: ic50=0.13uM
    BindingDB: IC50=130nM
    1734 1ia4:B (1.85) BS02 TQ6 1.5.1.3 GO:0004146 ... P22906 11520201 MOAD: ic50=0.13uM
    BindingDB: IC50=130nM
    1735 1ibg:H (2.7) BS01 OBN N/A N/A N/A 7739045 PDBbind: -logKd/Ki=8.55, Ki=2.8nM
    1736 1ibg:L (2.7) BS01 OBN N/A N/A N/A 7739045 PDBbind: -logKd/Ki=8.55, Ki=2.8nM
    1737 1ict:A (3.0) BS01 T44 ? GO:0005179 ... P02766 11418763 BindingDB: IC50=10500nM
    1738 1ict:B (3.0) BS01 T44 ? GO:0005179 ... P02766 11418763 BindingDB: IC50=10500nM
    1739 1ict:C (3.0) BS01 T44 ? GO:0005179 ... P02766 11418763 BindingDB: IC50=10500nM
    1740 1ict:D (3.0) BS01 T44 ? GO:0005179 ... P02766 11418763 BindingDB: IC50=10500nM
    1741 1ida:A (1.7) BS01 0PO 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.47    		 GO:0004190 ... P04584 7743130 PDBbind: -logKd/Ki=8.70, IC50<=2.0nM
    1742 1ida:B (1.7) BS01 0PO 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.47    		 GO:0004190 ... P04584 7743130 MOAD: ic50<2nM
    PDBbind: -logKd/Ki=8.70, IC50<=2.0nM
    1743 1idb:A (2.2) BS01 0DO 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.47    		 GO:0004190 ... P04584 7743130 PDBbind: -logKd/Ki=7.96, IC50=11nM
    1744 1idb:B (2.2) BS01 0DO 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.47    		 GO:0004190 ... P04584 7743130 MOAD: ic50=11nM
    PDBbind: -logKd/Ki=7.96, IC50=11nM
    1745 1ie3:C (2.5) BS02 PYR 1.1.1.37 GO:0003824 ... P61889 11389141 MOAD: Ki=56mM
    1746 1ie9:A (1.4) BS01 VDX ? GO:0003677 ... P11473 11344298 PDBbind: -logKd/Ki=10.19, Kd=0.065nM
    BindingDB: EC50=10nM, IC50=1.1nM, Kd=0.065nM
    1747 1iei:A (2.5) BS02 ZES 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 11914486 MOAD: ic50=44nM
    BindingDB: IC50=8nM
    1748 1iem:A (2.3) BS01 CB4 3.5.2.6 GO:0008800 ... P00811 11478888 PDBbind: -logKd/Ki=7.70, Ki=20nM
    1749 1iep:A (2.1) BS01 STI 2.7.10.2 GO:0004672 ... P00520 12154025 MOAD: ic50=100nM
    PDBbind: -logKd/Ki=7.00, IC50=100nM
    BindingDB: IC50=10.8nM
    1750 1iep:B (2.1) BS01 STI 2.7.10.2 GO:0004672 ... P00520 12154025 MOAD: ic50=100nM
    BindingDB: IC50=10.8nM
    1751 1iew:A (2.55) BS01 G2F 3.2.1.21 GO:0004553 ... Q9XEI3 11709165 PDBbind: -logKd/Ki=4.59, Ki=25.50uM
    1752 1if4:A (1.93) BS02 FBS 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A BindingDB: Kd=435nM, IC50=203nM
    1753 1if7:A (1.98) BS02 SBR 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11818565 MOAD: Kd=30pM
    PDBbind: -logKd/Ki=10.52, Kd=30pM
    1754 1if8:A (1.94) BS02 SBS 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11818565 MOAD: Kd=230pM
    PDBbind: -logKd/Ki=9.64, Kd=230pM
    1755 1igb:A (2.3) BS03 IPO 3.4.11.10 GO:0006508 ... Q01693 8647077 MOAD: Ki=0.4uM
    PDBbind: -logKd/Ki=6.40, Ki=0.4uM
    1756 1igj:B (2.5) BS01 DGX N/A N/A N/A 8234291 MOAD: Kd=0.1nM
    1757 1igj:D (2.5) BS01 DGX N/A N/A N/A 8234291 MOAD: Kd=0.1nM
    PDBbind: -logKd/Ki=10.00, Kd=0.1nM
    1758 1ign:A (2.25) BS01 dna ? GO:0000723 ... P11938 8620531 PDBbind: Kd=13pM
    1759 1ign:A (2.25) BS02 dna ? GO:0000723 ... P11938 8620531 PDBbind: Kd=13pM
    1760 1ign:B (2.25) BS01 dna ? GO:0000723 ... P11938 8620531 PDBbind: Kd=13pM
    1761 1ign:B (2.25) BS02 dna ? GO:0000723 ... P11938 8620531 PDBbind: Kd=13pM
    1762 1ih0:A (-1.00) BS03 EMD ? GO:0005509 ... P63316 11320096 PDBbind: -logKd/Ki=5.00, Kd=10uM
    1763 1ihy:A (3.0) BS01 APR 1.2.1.12 GO:0004365 ... P56649 12136140 PDBbind: -logKd/Ki=3.74, Ki=0.18mM
    1764 1ihy:C (3.0) BS01 APR 1.2.1.12 GO:0004365 ... P56649 12136140 PDBbind: -logKd/Ki=3.74, Ki=0.18mM
    1765 1ii5:A (1.6) BS01 GLU ? GO:0015276 ... P73797 11518533 MOAD: Kd=240nM
    PDBbind: -logKd/Ki=6.62, Kd=240nM
    1766 1iig:B (2.6) BS01 3PP 5.3.1.1 GO:0004807 ... P04789 2062828 PDBbind: -logKd/Ki=1.57, Ki=27mM
    1767 1iiq:A (1.83) BS01 0ZR 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 11906284 MOAD: Ki=33nM
    PDBbind: -logKd/Ki=7.48, Ki=33nM
    1768 1iiq:B (1.83) BS01 0ZR 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 11906284 PDBbind: -logKd/Ki=7.48, Ki=33nM
    1769 1ijr:A (2.2) BS01 CC0 2.7.10.2 N/A P06239 11527723 PDBbind: -logKd/Ki=5.44, IC50=3.6uM
    1770 1ijw:C (2.4) BS01 dna ? GO:0000150 ... P03013 11847127 PDBbind: Kd=3.8nM
    1771 1ijw:C (2.4) BS02 dna ? GO:0000150 ... P03013 11847127 PDBbind: Kd=3.8nM
    1772 1ik4:A (2.0) BS01 PGH 4.2.3.3 GO:0005737 ... P0A731 11389594 MOAD: Ki=39nM
    PDBbind: -logKd/Ki=7.41, Ki=39nM
    1773 1ik4:B (2.0) BS01 PGH 4.2.3.3 GO:0005737 ... P0A731 11389594 MOAD: Ki=39nM
    1774 1ik4:C (2.0) BS01 PGH 4.2.3.3 GO:0005737 ... P0A731 11389594 MOAD: Ki=39nM
    1775 1ik4:D (2.0) BS01 PGH 4.2.3.3 GO:0005737 ... P0A731 11389594 MOAD: Ki=39nM
    1776 1ik4:E (2.0) BS01 PGH 4.2.3.3 GO:0005737 ... P0A731 11389594 MOAD: Ki=39nM
    1777 1ik4:F (2.0) BS01 PGH 4.2.3.3 GO:0005737 ... P0A731 11389594 MOAD: Ki=39nM
    PDBbind: -logKd/Ki=7.41, Ki=39nM
    1778 1ikt:A (1.75) BS01 OXN 1.1.1.n12
    4.2.1.107
    4.2.1.119    		 N/A P51659 11700068 PDBbind: -logKd/Ki=3.40, Kd=400uM
    1779 1ikv:A (3.0) BS01 EFZ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 11895437 PDBbind: -logKd/Ki=6.28, IC50=520nM
    1780 1ikw:A (3.0) BS01 EFZ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 11895437 PDBbind: -logKd/Ki=8.60, IC50=2.5nM
    1781 1ikx:A (2.8) BS01 PNU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 11895437 PDBbind: -logKd/Ki=8.15, IC50=7.0nM
    1782 1iky:A (3.0) BS01 MSD 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 11895437 PDBbind: -logKd/Ki=8.26, IC50=5.5nM
    1783 1il2:A (2.6) BS01 rna 6.1.1.12 GO:0000166 ... P21889 11566892 PDBbind: Kd=3uM
    1784 1il2:B (2.6) BS01 rna 6.1.1.12 GO:0000166 ... P21889 11566892 PDBbind: Kd=3uM
    1785 1il3:A (2.8) BS01 7DG 3.2.2.22 GO:0017148 ... P02879 11754581 PDBbind: -logKd/Ki=2.55, IC50=2.8mM
    1786 1il4:A (2.6) BS01 9DG 3.2.2.22 GO:0017148 ... P02879 11754581 PDBbind: -logKd/Ki=2.85, IC50=1.4mM
    BindingDB: IC50=1400000nM
    1787 1il5:A (2.8) BS01 DDP 3.2.2.22 GO:0017148 ... P02879 11754581 PDBbind: -logKd/Ki=2.66, IC50=2.2mM
    1788 1il9:A (3.1) BS01 MOG 3.2.2.22 GO:0017148 ... P02879 11754581 PDBbind: -logKd/Ki=3.40, IC50=0.40mM
    BindingDB: IC50=400000nM
    1789 1ilh:A (2.76) BS01 SRL ? GO:0003677 ... O75469 11408620 PDBbind: -logKd/Ki=7.39, Kd=41nM
    BindingDB: EC50=440nM
    1790 1imh:C (2.86) BS01 dna ? GO:0000978 ... O94916 11780147 PDBbind: Kd=30nM
    1791 1imh:C (2.86) BS02 dna ? GO:0000978 ... O94916 11780147 PDBbind: Kd=30nM
    1792 1imh:D (2.86) BS01 dna ? GO:0000978 ... O94916 11780147 PDBbind: Kd=30nM
    1793 1imx:A (1.82) BS01 CPQ ? GO:0005179 ... P05019 11551198 PDBbind: -logKd/Ki=3.52, Kd=300uM
    1794 1inc:A (1.94) BS02 ICL 3.4.21.36 GO:0004252 ... P00772 3430613 PDBbind: -logKd/Ki=9.34, Ki=0.46nM
    1795 1ind:H (2.2) BS01 EOT N/A N/A N/A 8218161 MOAD: Ka=11000000000M^-1
    PDBbind: -logKd/Ki=10.05, Kd=0.09nM
    1796 1ind:L (2.2) BS01 EOT N/A N/A N/A 8218161 PDBbind: -logKd/Ki=10.05, Kd=0.09nM
    1797 1inf:A (2.4) BS02 ST4 3.2.1.18 GO:0004308 ... P03474 7650674 MOAD: ic50=10uM
    PDBbind: -logKd/Ki=5.00, IC50=10uM
    1798 1ing:A (2.4) BS02 ST5 3.2.1.18 GO:0004308 ... P06820 7650674 PDBbind: -logKd/Ki=2.00, IC50>10mM
    1799 1inh:A (2.4) BS03 ST6 3.2.1.18 GO:0004308 ... P06820 7650674 PDBbind: -logKd/Ki=2.30, IC50=5mM
    1800 1io4:A (3.0) BS01 dna ? GO:0003700 ... P17676 11257229 PDBbind: Kd=7.56nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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