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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 48291 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    15801 3lmy:A (2.8) BS01 CP6 3.2.1.52 GO:0004553 ... P07686 N/A BindingDB: IC50=9100nM
    15802 3lmy:B (2.8) BS01 CP6 3.2.1.52 GO:0004553 ... P07686 N/A BindingDB: IC50=9100nM
    15803 3ln0:A (2.2) BS02 52B 1.14.99.1 GO:0001516 ... Q05769 20709553 MOAD: ic50=0.01uM
    15804 3ln0:B (2.2) BS02 52B 1.14.99.1 GO:0001516 ... Q05769 20709553 MOAD: ic50=0.01uM
    15805 3ln0:C (2.2) BS02 52B 1.14.99.1 GO:0001516 ... Q05769 20709553 MOAD: ic50=0.01uM
    15806 3ln0:D (2.2) BS02 52B 1.14.99.1 GO:0001516 ... Q05769 20709553 MOAD: ic50=0.01uM
    15807 3ln1:A (2.4) BS02 CEL 1.14.99.1 GO:0001516 ... Q05769 20709553 BindingDB: IC50=60nM
    15808 3ln1:B (2.4) BS02 CEL 1.14.99.1 GO:0001516 ... Q05769 20709553 BindingDB: IC50=60nM
    15809 3ln1:C (2.4) BS02 CEL 1.14.99.1 GO:0001516 ... Q05769 20709553 BindingDB: IC50=60nM
    15810 3ln1:D (2.4) BS02 CEL 1.14.99.1 GO:0001516 ... Q05769 20709553 BindingDB: IC50=60nM
    15811 3lnk:A (1.8) BS01 74A 3.4.23.46 GO:0004190 ... P56817 20347593 MOAD: ic50=1150nM
    PDBbind: -logKd/Ki=5.94, IC50=1150nM
    BindingDB: IC50=1150nM
    15812 3lnk:B (1.8) BS01 74A 3.4.23.46 GO:0004190 ... P56817 20347593 MOAD: ic50=1150nM
    BindingDB: IC50=1150nM
    15813 3lnq:A (2.25) BS01 dna ? GO:0000981 ... Q06453 20389279 PDBbind: Kd=0.276uM
    15814 3lnq:A (2.25) BS02 dna ? GO:0000981 ... Q06453 20389279 PDBbind: Kd=0.276uM
    15815 3lok:A (2.48) BS01 DJK 2.7.10.2 GO:0004672 ... P00523 21080395 PDBbind: -logKd/Ki=6.92, IC50=120nM
    BindingDB: IC50=>27000nM
    15816 3lok:B (2.48) BS01 DJK 2.7.10.2 GO:0004672 ... P00523 21080395 BindingDB: IC50=>27000nM
    15817 3loo:A (2.0) BS01 B4P N/A GO:0004001 ... N/A 21247194 MOAD: Ki=860nM
    PDBbind: -logKd/Ki=6.07, Ki=860nM
    15818 3loo:B (2.0) BS01 B4P N/A GO:0004001 ... N/A 21247194 MOAD: Ki=860nM
    15819 3loo:C (2.0) BS01 B4P N/A GO:0004001 ... N/A 21247194 MOAD: Ki=860nM
    15820 3lox:A (2.65) BS04 MCX 3.4.21.98
    3.6.1.15
    3.6.4.13    		 GO:0006508 ... Q9ELS8 20303756 PDBbind: -logKd/Ki=8.10, Ki=8nM
    15821 3lp0:A (2.79) BS03 LP7 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P04585 20484498 PDBbind: -logKd/Ki=6.96, IC50=0.11uM
    15822 3lp1:A (2.23) BS01 LP8 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P04585 20484498 PDBbind: -logKd/Ki=6.92, IC50=0.12uM
    15823 3lp2:A (2.8) BS01 LP9 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P04585 20484498 PDBbind: -logKd/Ki=6.66, IC50=0.22uM
    15824 3lp4:A (1.9) BS03 LYS 3.5.3.1 GO:0000050 ... P05089 20153713 MOAD: Kd=13100nM
    PDBbind: -logKd/Ki=4.88, Kd=13.1uM
    15825 3lp4:B (1.9) BS03 LYS 3.5.3.1 GO:0000050 ... P05089 20153713 MOAD: Kd=13100nM
    15826 3lp7:A (2.04) BS03 HAR 3.5.3.1 GO:0000050 ... P05089 20153713 MOAD: Kd=3600nM
    PDBbind: -logKd/Ki=5.44, Kd=3.6uM
    15827 3lp7:B (2.04) BS03 HAR 3.5.3.1 GO:0000050 ... P05089 20153713 MOAD: Kd=3600nM
    15828 3lpb:A (2.0) BS01 NVB 2.7.10.2 GO:0004672 ... O60674 20231096 MOAD: ic50=42nM
    PDBbind: -logKd/Ki=7.38, IC50=42nM
    BindingDB: IC50=42nM
    15829 3lpb:B (2.0) BS01 NVB 2.7.10.2 GO:0004672 ... O60674 20231096 MOAD: ic50=42nM
    BindingDB: IC50=42nM
    15830 3lpf:A (2.26) BS01 Z77 3.2.1.31 GO:0004553 ... P05804 21051639 MOAD: Ki=208nM
    PDBbind: -logKd/Ki=6.68, Ki=208nM
    BindingDB: Ki=2.1e+2nM
    15831 3lpf:B (2.26) BS01 Z77 3.2.1.31 GO:0004553 ... P05804 21051639 MOAD: Ki=208nM
    BindingDB: Ki=2.1e+2nM
    15832 3lpg:A (2.425) BS01 Z78 3.2.1.31 GO:0004553 ... P05804 21051639 PDBbind: -logKd/Ki=6.16, Ki=684nM
    15833 3lpi:A (2.05) BS01 Z74 3.4.23.46 GO:0004190 ... P56817 20347593 MOAD: Ki=3nM
    PDBbind: -logKd/Ki=8.52, Ki=3nM
    BindingDB: IC50=120nM, Ki=3nM
    15834 3lpi:B (2.05) BS01 Z74 3.4.23.46 GO:0004190 ... P56817 20347593 MOAD: Ki=3nM
    BindingDB: IC50=120nM, Ki=3nM
    15835 3lpj:A (1.79) BS01 Z75 3.4.23.46 GO:0004190 ... P56817 20347593 MOAD: ic50=120nM
    PDBbind: -logKd/Ki=6.92, IC50=120nM
    BindingDB: IC50=120nM
    15836 3lpj:B (1.79) BS01 Z75 3.4.23.46 GO:0004190 ... P56817 20347593 MOAD: ic50=120nM
    BindingDB: IC50=120nM
    15837 3lpk:A (1.93) BS01 Z76 3.4.23.46 GO:0004190 ... P56817 20347593 MOAD: Ki=0.8nM
    PDBbind: -logKd/Ki=9.10, Ki=0.8nM
    BindingDB: IC50=7nM, Ki=0.800000nM
    15838 3lpk:B (1.93) BS01 Z76 3.4.23.46 GO:0004190 ... P56817 20347593 MOAD: Ki=0.8nM
    BindingDB: IC50=7nM, Ki=0.800000nM
    15839 3lpp:B (2.15) BS01 KTL 3.2.1.10
    3.2.1.48    		 GO:0003824 ... P14410 20356844 MOAD: Ki=0.6uM
    PDBbind: -logKd/Ki=6.22, Ki=0.60uM
    15840 3lpp:D (2.15) BS01 KTL 3.2.1.10
    3.2.1.48    		 GO:0003824 ... P14410 20356844 MOAD: Ki=0.6uM
    15841 3lpt:A (2.0) BS01 723 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 20473303 PDBbind: -logKd/Ki=4.91, IC50=12.2uM
    15842 3lpu:A (1.95) BS01 976 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 20473303 PDBbind: -logKd/Ki=5.86, IC50=1.37uM
    15843 3lq5:A (3.0) BS01 SLQ 2.7.11.22
    2.7.11.23    		 GO:0004672 ... P50750 21779453 PDBbind: -logKd/Ki=6.96, IC50=0.11uM
    BindingDB: IC50=110nM
    15844 3lq8:A (2.02) BS01 88Z 2.7.10.1 GO:0004672 ... P08581 19808973 MOAD: ic50=0.4nM
    PDBbind: -logKd/Ki=9.40, IC50=0.4nM
    BindingDB: IC50=0.400000nM
    15845 3lqg:A (1.35) BS02 388 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 21185307 MOAD: Kd=0.301uM
    BindingDB: IC50=4.0e+2nM
    15846 3lql:A (1.13) BS02 LDT 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 21185307 MOAD: Kd=1.64uM
    BindingDB: IC50=30nM
    15847 3lrn:A (2.6) BS01 rna 3.6.4.13 N/A O95786 20637642 PDBbind: Kd=0.32nM
    15848 3lrn:B (2.6) BS01 rna 3.6.4.13 N/A O95786 20637642 PDBbind: Kd=0.32nM
    15849 3ls4:H (2.0) BS01 TCI N/A N/A N/A 20630472 PDBbind: -logKd/Ki=6.30, IC50=500nM
    15850 3ls4:L (2.0) BS01 TCI N/A N/A N/A 20630472 PDBbind: -logKd/Ki=6.30, IC50=500nM
    15851 3lsp:A (2.66) BS01 dna ? GO:0000976 ... Q9HUS3 20639888 PDBbind: Kd=2.2uM
    15852 3lsp:A (2.66) BS02 dna ? GO:0000976 ... Q9HUS3 20639888 PDBbind: Kd=2.2uM
    15853 3lt0:A (1.96) BS02 FT1 1.3.1.9 GO:0004318 ... Q9BJJ9 20503440 MOAD: Ki=0.18uM
    15854 3lt0:B (1.96) BS02 FT1 1.3.1.9 GO:0004318 ... Q9BJJ9 20503440 MOAD: Ki=0.18uM
    15855 3lt1:A (2.2) BS02 FT2 1.3.1.9 GO:0004318 ... Q9BJJ9 20503440 MOAD: Ki=0.32uM
    15856 3lt1:B (2.2) BS02 FT2 1.3.1.9 GO:0004318 ... Q9BJJ9 20503440 MOAD: Ki=0.32uM
    15857 3lt2:A (2.5) BS02 FT3 1.3.1.9 GO:0004318 ... Q9BJJ9 20503440 MOAD: Ki=0.38uM
    15858 3lt2:B (2.5) BS02 FT3 1.3.1.9 GO:0004318 ... Q9BJJ9 20503440 MOAD: Ki=0.38uM
    15859 3lt4:A (2.25) BS02 FB4 1.3.1.9 GO:0004318 ... Q9BJJ9 20503440 MOAD: Ki=0.1uM
    15860 3lt4:B (2.25) BS02 FB4 1.3.1.9 GO:0004318 ... Q9BJJ9 20503440 MOAD: Ki=0.1uM
    15861 3lud:A (2.095) BS01 AMP 3.1.26.n2 GO:0003676 ... Q9UKV8 20505670 MOAD: Kd=0.26mM
    15862 3lud:B (2.095) BS01 AMP 3.1.26.n2 GO:0003676 ... Q9UKV8 20505670 MOAD: Kd=0.26mM
    15863 3lud:C (2.095) BS01 AMP 3.1.26.n2 GO:0003676 ... Q9UKV8 20505670 MOAD: Kd=0.26mM
    15864 3lug:A (1.849) BS02 C5P 3.1.26.n2 GO:0003676 ... Q9UKV8 20505670 MOAD: Kd=3.6mM
    15865 3lug:B (1.849) BS01 C5P 3.1.26.n2 GO:0003676 ... Q9UKV8 20505670 MOAD: Kd=3.6mM
    15866 3lug:C (1.849) BS02 C5P 3.1.26.n2 GO:0003676 ... Q9UKV8 20505670 MOAD: Kd=3.6mM
    15867 3luh:A (1.999) BS01 5GP 3.1.26.n2 GO:0003676 ... Q9UKV8 20505670 MOAD: Kd=3.3mM
    15868 3luh:B (1.999) BS01 5GP 3.1.26.n2 GO:0003676 ... Q9UKV8 20505670 MOAD: Kd=3.3mM
    15869 3luj:A (1.796) BS01 U5P 3.1.26.n2 GO:0003676 ... Q9UKV8 20505670 MOAD: Kd=0.12mM
    15870 3luj:B (1.796) BS01 U5P 3.1.26.n2 GO:0003676 ... Q9UKV8 20505670 MOAD: Kd=0.12mM
    15871 3luj:C (1.796) BS01 U5P 3.1.26.n2 GO:0003676 ... Q9UKV8 20505670 MOAD: Kd=0.12mM
    15872 3lvp:A (3.0) BS01 PDR 2.7.10.1 GO:0004672 ... P08069 20545947 PDBbind: -logKd/Ki=8.70, IC50=2nM
    15873 3lvw:A (2.5) BS01 GSH 6.3.2.2 GO:0003824 ... P32477 20220146 MOAD: Ki=2.12mM
    PDBbind: -logKd/Ki=2.67, Ki=2.12mM
    15874 3lw0:A (1.79) BS01 CCX 2.7.10.1 GO:0004672 ... P08069 24900194 PDBbind: -logKd/Ki=6.40, IC50=0.4uM
    15875 3lw0:A (1.79) BS02 CCX 2.7.10.1 GO:0004672 ... P08069 24900194 PDBbind: -logKd/Ki=6.40, IC50=0.4uM
    15876 3lw0:A (1.79) BS03 CCX 2.7.10.1 GO:0004672 ... P08069 24900194 PDBbind: -logKd/Ki=6.40, IC50=0.4uM
    15877 3lwl:A (2.25) BS01 dna 2.7.7.7 GO:0001882 ... P19821 20400942 PDBbind: Kd=149uM
    15878 3lwl:A (2.25) BS02 dna 2.7.7.7 GO:0001882 ... P19821 20400942 PDBbind: Kd=149uM
    15879 3lwm:A (2.186) BS01 dna 2.7.7.7 GO:0001882 ... P19821 20400942 PDBbind: Kd=275uM
    15880 3lwm:A (2.186) BS02 dna 2.7.7.7 GO:0001882 ... P19821 20400942 PDBbind: Kd=275uM
    15881 3lxe:A (1.9) BS02 TOR 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 20505865 MOAD: Ki=250nM
    PDBbind: -logKd/Ki=6.60, Ki=250nM
    BindingDB: Ki=250nM, IC50=250nM
    15882 3lxe:B (1.9) BS02 TOR 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 20505865 MOAD: Ki=250nM
    BindingDB: Ki=250nM, IC50=250nM
    15883 3lxg:A (2.3) BS01 Z73 3.1.4.17 GO:0004114 ... Q9QYJ6 20450197 MOAD: ic50=7.28nM
    PDBbind: -logKd/Ki=8.14, IC50=7.28nM
    15884 3lxi:A (2.2) BS02 CAM ? GO:0004497 ... Q2GB12 20576606 MOAD: Kd=9.1uM
    15885 3lxi:B (2.2) BS02 CAM ? GO:0004497 ... Q2GB12 20576606 MOAD: Kd=9.1uM
    15886 3lxk:A (2.0) BS01 MI1 2.7.10.2 GO:0004672 ... P52333 20478313 MOAD: Ki=0.2nM
    PDBbind: -logKd/Ki=9.80, Kd=0.16nM
    BindingDB: IC50=55nM, Ki=0.400000nM, Kd=2.2nM
    15887 3lxl:A (1.74) BS01 IZA 2.7.10.2 GO:0004672 ... P52333 20478313 PDBbind: -logKd/Ki=8.30, IC50=5nM
    BindingDB: IC50=5nM
    15888 3lxn:A (2.5) BS01 MI1 2.7.10.2 GO:0004672 ... P29597 20478313 MOAD: Ki=4.4nM
    BindingDB: IC50=489nM, Kd=620nM, Ki=4.39nM
    15889 3lxo:A (1.549) BS01 T3P 4.6.1.18 GO:0003676 ... P61823 20602460 MOAD: Kd=15uM
    PDBbind: -logKd/Ki=4.82, Kd=15uM
    15890 3lxp:A (1.65) BS01 IZA 2.7.10.2 GO:0004672 ... P29597 20478313 BindingDB: IC50=1nM
    15891 3lxs:A (1.5) BS01 4MC 3.4.22.51 GO:0006508 ... P25779 20856868 PDBbind: -logKd/Ki=8.10, IC50=8nM
    15892 3ly2:A (2.6) BS01 Z72 3.1.4.53 GO:0004114 ... Q07343 20378348 PDBbind: -logKd/Ki=8.30, IC50=5nM
    BindingDB: IC50=5nM
    15893 3ly2:B (2.6) BS01 Z72 3.1.4.53 GO:0004114 ... Q07343 20378348 BindingDB: IC50=5nM
    15894 3ly2:C (2.6) BS01 Z72 3.1.4.53 GO:0004114 ... Q07343 20378348 BindingDB: IC50=5nM
    15895 3ly2:D (2.6) BS01 Z72 3.1.4.53 GO:0004114 ... Q07343 20378348 BindingDB: IC50=5nM
    15896 3ly2:E (2.6) BS01 Z72 3.1.4.53 GO:0004114 ... Q07343 20378348 BindingDB: IC50=5nM
    15897 3ly2:F (2.6) BS01 Z72 3.1.4.53 GO:0004114 ... Q07343 20378348 BindingDB: IC50=5nM
    15898 3ly2:G (2.6) BS01 Z72 3.1.4.53 GO:0004114 ... Q07343 20378348 BindingDB: IC50=5nM
    15899 3ly2:H (2.6) BS01 Z72 3.1.4.53 GO:0004114 ... Q07343 20378348 BindingDB: IC50=5nM
    15900 3lz3:A (1.03) BS02 388 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 21185307 BindingDB: IC50=4.0e+2nM
    15901 3lz5:A (0.95) BS02 LDT 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 21185307 MOAD: Kd=0.827uM
    BindingDB: IC50=30nM
    15902 3lzb:A (2.7) BS02 ITI 2.7.10.1 GO:0004672 ... P00533 20346655 PDBbind: -logKd/Ki=7.20, IC50=63nM
    BindingDB: Ki=32nM
    15903 3lzb:B (2.7) BS02 ITI 2.7.10.1 GO:0004672 ... P00533 20346655 BindingDB: Ki=32nM
    15904 3lzb:C (2.7) BS02 ITI 2.7.10.1 GO:0004672 ... P00533 20346655 BindingDB: Ki=32nM
    15905 3lzb:D (2.7) BS02 ITI 2.7.10.1 GO:0004672 ... P00533 20346655 BindingDB: Ki=32nM
    15906 3lzi:A (2.3) BS01 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 20411947 PDBbind: Kd=48uM
    15907 3lzi:A (2.3) BS02 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 20411947 PDBbind: Kd=48uM
    15908 3lzj:A (2.05) BS01 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 20411947 PDBbind: Kd=29uM
    15909 3lzj:A (2.05) BS02 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 20411947 PDBbind: Kd=29uM
    15910 3lzs:A (1.95) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P24740 20660190 MOAD: Kd=0.0109nM
    PDBbind: -logKd/Ki=10.96, Kd=0.0109nM
    15911 3lzs:B (1.95) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P24740 20660190 PDBbind: -logKd/Ki=10.96, Kd=0.0109nM
    15912 3lzu:A (1.76) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P24740 20660190 MOAD: Kd=0.087nM
    PDBbind: -logKd/Ki=10.06, Kd=0.087nM
    15913 3lzu:B (1.76) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P24740 20660190 PDBbind: -logKd/Ki=10.06, Kd=0.087nM
    15914 3lzv:A (2.15) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 20660190 MOAD: Kd=0.026nM
    PDBbind: -logKd/Ki=10.59, Kd=0.026nM
    15915 3lzv:B (2.15) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 20660190 PDBbind: -logKd/Ki=10.59, Kd=0.026nM
    15916 3lzw:A (1.8) BS02 NAP 1.18.1.2 GO:0004324 ... O05268 20878669 MOAD: Kd=14uM
    15917 3lzx:A (1.9) BS02 NAP 1.18.1.2 GO:0004324 ... O05268 20878669 MOAD: Kd=14uM
    15918 3lzx:B (1.9) BS03 NAP 1.18.1.2 GO:0004324 ... O05268 20878669 MOAD: Kd=14uM
    15919 3lzz:A (2.5) BS01 GDP ? N/A Q6WRH7 N/A PDBbind: -logKd/Ki=3.84, Kd=146uM
    15920 3m08:A (2.014) BS01 RAR 1.5.1.3 GO:0004146 ... P0A017 20606069 MOAD: Ki=2.8nM
    BindingDB: IC50=12.5nM, Ki=0.9nM
    15921 3m09:A (2.009) BS01 RAR 1.5.1.3 GO:0004146 ... P0A017 20606069 MOAD: Ki=0.9nM
    BindingDB: IC50=12.5nM, Ki=0.9nM
    15922 3m0i:A (1.07) BS02 ZST 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 21684320 MOAD: Kd=1.85uM
    BindingDB: IC50=3.1nM, Ki=19nM
    15923 3m11:A (2.75) BS01 AKI 2.7.11.1 GO:0000212 ... O14965 20550212 PDBbind: -logKd/Ki=7.37, IC50=43nM
    BindingDB: IC50=43nM
    15924 3m1k:A (1.35) BS02 BEW 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 20629007 MOAD: Ki=4.1uM
    PDBbind: -logKd/Ki=5.39, Ki=4.1uM
    15925 3m1s:A (3.134) BS01 DW1 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 20821241 PDBbind: -logKd/Ki=9.00, IC50=1.0nM
    15926 3m2u:A (1.4) BS04 TXZ 2.8.4.1 GO:0005737 ... P11558 20707311 PDBbind: -logKd/Ki=7.00, Ki=0.1uM
    15927 3m2u:A (1.4) BS07 TXZ 2.8.4.1 GO:0005737 ... P11558 20707311 PDBbind: -logKd/Ki=7.00, Ki=0.1uM
    15928 3m2u:B (1.4) BS03 TXZ 2.8.4.1 GO:0005737 ... P11560 20707311 PDBbind: -logKd/Ki=7.00, Ki=0.1uM
    15929 3m2u:D (1.4) BS03 TXZ 2.8.4.1 GO:0005737 ... P11558 20707311 PDBbind: -logKd/Ki=7.00, Ki=0.1uM
    15930 3m2u:D (1.4) BS07 TXZ 2.8.4.1 GO:0005737 ... P11558 20707311 PDBbind: -logKd/Ki=7.00, Ki=0.1uM
    15931 3m2w:A (2.41) BS01 L8I 2.7.11.1 GO:0004672 ... P49137 20591669 MOAD: ic50<0.003uM
    PDBbind: -logKd/Ki=8.52, IC50<3nM
    BindingDB: IC50=<3nM
    15932 3m2y:A (1.17) BS02 BE0 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A BindingDB: Ki=148nM
    15933 3m2y:A (1.17) BS03 BE0 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A BindingDB: Ki=148nM
    15934 3m2z:A (1.7) BS03 CO3 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A BindingDB: Ki=73000000nM
    15935 3m35:A (2.2) BS01 M35 3.4.21.4 GO:0004175 ... P00760 14640539 PDBbind: -logKd/Ki=7.22, Ki=60nM
    BindingDB: Ki=60nM
    15936 3m36:A (2.15) BS01 M35 3.4.21.6 GO:0004252 ... P00742 14640539 PDBbind: -logKd/Ki=9.82, Ki=0.15nM
    BindingDB: Ki=0.15nM, IC50=2.4nM
    15937 3m37:A (1.9) BS01 M37 3.4.21.6 GO:0004252 ... P00742 14640539 PDBbind: -logKd/Ki=9.04, Ki=0.91nM
    BindingDB: Ki=0.910nM
    15938 3m3c:A (2.0) BS01 GAL 3.1.21.- GO:0004518 ... Q6WY08 20530247 PDBbind: -logKd/Ki=4.06, Kd=86.21uM
    15939 3m3e:A (2.1) BS01 GAL 3.1.21.- GO:0004518 ... Q6WY08 20530247 PDBbind: -logKd/Ki=4.43, Kd=37.45uM
    15940 3m3o:A (2.1) BS01 GAL 3.1.21.- GO:0004518 ... Q6WY08 20530247 PDBbind: -logKd/Ki=3.60, Kd=250.63uM
    15941 3m3x:A (1.68) BS02 JS7 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 20889345 MOAD: Kd=0.15uM
    PDBbind: -logKd/Ki=6.82, Kd=0.15uM
    BindingDB: Kd=150nM
    15942 3m3z:A (2.1) BS01 3F5 3.6.4.10 GO:0005524 ... P11142 21526763 MOAD: Kd=12.36uM
    PDBbind: -logKd/Ki=5.73, Ki=1.85uM
    15943 3m40:A (1.6) BS02 J45 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 20889345 MOAD: Kd=0.17uM
    PDBbind: -logKd/Ki=6.77, Kd=0.17uM
    BindingDB: Kd=90nM
    15944 3m42:A (2.68) BS02 HGF 2.7.11.1 GO:0004672 ... P49137 N/A BindingDB: IC50=700nM
    15945 3m4h:A (0.94) BS02 388 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 21185307 MOAD: Kd=1.01uM
    BindingDB: IC50=4.0e+2nM
    15946 3m54:A (1.6) BS02 SAH 2.1.1.364 GO:0005694 ... Q8WTS6 20675860 BindingDB: IC50=30000nM
    15947 3m5e:A (1.7) BS02 JDR 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 20889345 MOAD: Kd=0.043uM
    PDBbind: -logKd/Ki=7.37, Kd=0.043uM
    BindingDB: Kd=24nM
    15948 3m5s:A (1.4) BS02 CO3 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A BindingDB: Ki=73000000nM
    15949 3m5t:A (1.95) BS03 CO3 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A BindingDB: Ki=73000000nM
    15950 3m64:A (1.3) BS02 393 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 21684320 MOAD: Kd=1.51uM
    BindingDB: IC50=6nM, Kd=14nM
    15951 3m67:A (1.8) BS01 E36 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 20926301 MOAD: Kd=0.18uM
    PDBbind: -logKd/Ki=6.74, Kd=0.18uM
    BindingDB: Kd=20nM
    15952 3m6f:A (1.85) BS01 BJZ ? N/A P20701 20405922 PDBbind: -logKd/Ki=8.60, IC50=2.5nM
    BindingDB: IC50=60nM
    15953 3m6p:A (2.0) BS01 BB2 3.5.1.88 GO:0042586 ... Q9FUZ2 21629676 MOAD: Ki=0.9nM
    PDBbind: -logKd/Ki=8.35, Kd=4.5nM
    15954 3m6p:B (2.0) BS01 BB2 3.5.1.88 GO:0042586 ... Q9FUZ2 21629676 MOAD: Ki=0.9nM
    15955 3m6q:A (2.4) BS01 BB2 3.5.1.88 GO:0042586 ... Q9FUZ2 21629676 MOAD: Kd=48nM
    PDBbind: -logKd/Ki=7.32, Kd=48nM
    15956 3m6r:A (2.4) BS01 BB2 3.5.1.88 GO:0042586 ... Q9FUZ2 21629676 MOAD: Kd=32nM
    PDBbind: -logKd/Ki=7.49, Kd=32nM
    15957 3m6r:B (2.4) BS01 BB2 3.5.1.88 GO:0042586 ... Q9FUZ2 21629676 MOAD: Kd=32nM
    15958 3m6r:C (2.4) BS01 BB2 3.5.1.88 GO:0042586 ... Q9FUZ2 21629676 MOAD: Kd=32nM
    15959 3m6r:D (2.4) BS01 BB2 3.5.1.88 GO:0042586 ... Q9FUZ2 21629676 MOAD: Kd=32nM
    15960 3m7r:A (1.8) BS01 VDX ? GO:0003677 ... P11473 20403435 BindingDB: EC50=10nM, IC50=1.1nM, Kd=0.065nM
    15961 3m89:A (2.0) BS01 GSP 3.6.5.- N/A Q8KNP3 20534443 MOAD: Kd=0.69uM
    PDBbind: -logKd/Ki=6.16, Kd=0.69uM
    15962 3m8p:A (2.67) BS01 65B 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P04585 20538456 PDBbind: -logKd/Ki=8.68, IC50=2.1nM
    15963 3m8q:A (2.7) BS01 DJZ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P04585 20538456 PDBbind: -logKd/Ki=9.52, IC50=0.3nM
    15964 3m8r:A (2.0) BS01 dna 2.7.7.7 GO:0001882 ... P19821 20572212 PDBbind: Kd=115uM
    15965 3m8r:A (2.0) BS02 dna 2.7.7.7 GO:0001882 ... P19821 20572212 PDBbind: Kd=115uM
    15966 3m8s:A (2.2) BS01 dna 2.7.7.7 GO:0001882 ... P19821 20572212 PDBbind: Kd=119uM
    15967 3m8s:A (2.2) BS02 dna 2.7.7.7 GO:0001882 ... P19821 20572212 PDBbind: Kd=119uM
    15968 3m8u:A (1.85) BS01 GDS ? GO:0015833 ... B8F653 20628015 MOAD: Kd=12.9uM
    PDBbind: -logKd/Ki=4.89, Kd=12.9uM
    15969 3m93:A (2.9) BS02 M7G ? GO:0003723 ... Q6PKX2 21965542 PDBbind: -logKd/Ki=6.62, Kd=0.24uM
    15970 3m94:A (2.05) BS02 M7M ? GO:0003723 ... Q6PKX2 21965542 PDBbind: -logKd/Ki=5.08, Kd=8.4uM
    15971 3m96:A (1.4) BS02 E38 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 20926301 MOAD: Kd=0.06uM
    PDBbind: -logKd/Ki=7.22, Kd=60nM
    15972 3m98:A (1.5) BS02 E02 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A BindingDB: Kd=1560nM, kon=280000M-1-s-1, koff=0.15s-1
    15973 3m9e:A (2.406) BS01 dna ? GO:0003677 ... P18113 20610536 PDBbind: Kd=0.13uM
    15974 3m9e:A (2.406) BS02 dna ? GO:0003677 ... P18113 20610536 PDBbind: Kd=0.13uM
    15975 3m9e:B (2.406) BS01 dna ? GO:0003677 ... P18113 20610536 PDBbind: Kd=0.13uM
    15976 3m9e:B (2.406) BS02 dna ? GO:0003677 ... P18113 20610536 PDBbind: Kd=0.13uM
    15977 3m9e:E (2.406) BS01 dna ? GO:0003677 ... P18113 20610536 PDBbind: Kd=0.13uM
    15978 3m9e:E (2.406) BS02 dna ? GO:0003677 ... P18113 20610536 PDBbind: Kd=0.13uM
    15979 3m9e:F (2.406) BS01 dna ? GO:0003677 ... P18113 20610536 PDBbind: Kd=0.13uM
    15980 3m9e:F (2.406) BS02 dna ? GO:0003677 ... P18113 20610536 PDBbind: Kd=0.13uM
    15981 3m9f:A (1.8) BS01 595 ? GO:0004190 ... Q9WFL7 20547452 MOAD: ic50=0.007nM
    PDBbind: -logKd/Ki=11.15, IC50=0.007nM
    15982 3m9f:A (1.8) BS02 595 ? GO:0004190 ... Q9WFL7 20547452 MOAD: ic50=0.007nM
    PDBbind: -logKd/Ki=11.15, IC50=0.007nM
    15983 3m9f:B (1.8) BS01 595 ? GO:0004190 ... Q9WFL7 20547452 MOAD: ic50=0.007nM
    PDBbind: -logKd/Ki=11.15, IC50=0.007nM
    15984 3m9f:B (1.8) BS02 595 ? GO:0004190 ... Q9WFL7 20547452 MOAD: ic50=0.007nM
    PDBbind: -logKd/Ki=11.15, IC50=0.007nM
    15985 3m9x:A (2.2) BS01 XYP ? GO:0015752 ... P37387 20678502 MOAD: Kd=0.13uM
    15986 3ma0:A (2.2) BS01 XYP ? GO:0015752 ... P37387 20678502 MOAD: Kd=0.13uM
    15987 3ma0:B (2.2) BS01 XYP ? GO:0015752 ... P37387 20678502 MOAD: Kd=0.13uM
    15988 3ma0:C (2.2) BS01 XYP ? GO:0015752 ... P37387 20678502 MOAD: Kd=0.13uM
    15989 3ma3:A (2.3) BS02 01I 2.7.11.1 GO:0004672 ... P11309 20400536 MOAD: ic50=60nM
    PDBbind: -logKd/Ki=7.22, IC50=60nM
    15990 3mag:A (1.8) BS02 3MA 2.1.1.57 GO:0003723 ... P07617 10377383 MOAD: Kd=86uM
    PDBbind: -logKd/Ki=4.07, Kd=86uM
    15991 3max:A (2.05) BS03 LLX 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 20392638 MOAD: ic50=0.027uM
    PDBbind: -logKd/Ki=6.05, IC50=0.90uM
    BindingDB: IC50=900nM
    15992 3max:B (2.05) BS03 LLX 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 20392638 MOAD: ic50=0.027uM
    BindingDB: IC50=900nM
    15993 3max:C (2.05) BS03 LLX 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 20392638 MOAD: ic50=0.027uM
    BindingDB: IC50=900nM
    15994 3mb6:A (1.75) BS01 01I 2.7.11.1 GO:0004672 ... P68400 20400536 MOAD: ic50=100nM
    PDBbind: -logKd/Ki=7.00, IC50=100nM
    15995 3mb7:A (1.65) BS01 14I 2.7.11.1 GO:0004672 ... P68400 20400536 MOAD: ic50=200nM
    PDBbind: -logKd/Ki=6.70, IC50=200nM
    15996 3mb9:A (1.65) BS02 ZST 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 21684320 MOAD: Kd=0.106uM
    BindingDB: IC50=3.1nM, Ki=19nM
    15997 3mbl:A (2.6) BS03 LSG 2.7.12.2 GO:0004672 ... Q02750 20621728 PDBbind: -logKd/Ki=7.74, IC50=0.018uM
    BindingDB: IC50=18nM
    15998 3mbz:A (2.6) BS01 MXC 3.5.2.6 GO:0008658 ... Q8RLA6 20822105 PDBbind: -logKd/Ki=5.80, Ki=1.6uM
    15999 3mc5:A (1.14) BS02 393 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 21684320 MOAD: Kd=1.51uM
    BindingDB: IC50=6nM, Kd=14nM
    16000 3mct:A (2.0) BS02 3MC 2.1.1.57 GO:0003746 ... P07617 10377383 MOAD: Kd=85.5uM
    PDBbind: -logKd/Ki=4.07, Kd=85.5uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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