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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 48291 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    14001 3g5k:C (1.7) BS01 BB2 3.5.1.88 GO:0042586 ... Q9HBH1 19236878 BindingDB: IC50=1.5nM, Ki=0.300000nM
    14002 3g5k:D (1.7) BS01 BB2 3.5.1.88 GO:0042586 ... Q9HBH1 19236878 BindingDB: IC50=1.5nM, Ki=0.300000nM
    14003 3g5m:A (1.84) BS02 XM5 1.10.5.1 GO:0001512 ... P16083 19265439 MOAD: ic50=54.1uM
    BindingDB: IC50=54100nM
    14004 3g5m:A (1.84) BS03 XM5 1.10.5.1 GO:0001512 ... P16083 19265439 MOAD: ic50=54.1uM
    BindingDB: IC50=54100nM
    14005 3g5m:A (1.84) BS05 XM5 1.10.5.1 GO:0001512 ... P16083 19265439 MOAD: ic50=54.1uM
    BindingDB: IC50=54100nM
    14006 3g5m:B (1.84) BS01 XM5 1.10.5.1 GO:0001512 ... P16083 19265439 MOAD: ic50=54.1uM
    BindingDB: IC50=54100nM
    14007 3g5m:B (1.84) BS02 XM5 1.10.5.1 GO:0001512 ... P16083 19265439 MOAD: ic50=54.1uM
    BindingDB: IC50=54100nM
    14008 3g5m:B (1.84) BS04 XM5 1.10.5.1 GO:0001512 ... P16083 19265439 MOAD: ic50=54.1uM
    BindingDB: IC50=54100nM
    14009 3g5n:A (2.5) BS02 PB2 1.14.14.1 GO:0004497 ... P00178 19397311 MOAD: ic50=0.035uM
    14010 3g5n:A (2.5) BS03 PB2 1.14.14.1 GO:0004497 ... P00178 19397311 MOAD: ic50=0.035uM
    14011 3g5n:A (2.5) BS05 PB2 1.14.14.1 GO:0004497 ... P00178 19397311 MOAD: ic50=0.035uM
    14012 3g5n:B (2.5) BS01 PB2 1.14.14.1 GO:0004497 ... P00178 19397311 MOAD: ic50=0.035uM
    14013 3g5n:B (2.5) BS02 PB2 1.14.14.1 GO:0004497 ... P00178 19397311 MOAD: ic50=0.035uM
    14014 3g5n:B (2.5) BS04 PB2 1.14.14.1 GO:0004497 ... P00178 19397311 MOAD: ic50=0.035uM
    14015 3g5n:B (2.5) BS05 PB2 1.14.14.1 GO:0004497 ... P00178 19397311 MOAD: ic50=0.035uM
    14016 3g5n:C (2.5) BS02 PB2 1.14.14.1 GO:0004497 ... P00178 19397311 MOAD: ic50=0.035uM
    14017 3g5n:C (2.5) BS03 PB2 1.14.14.1 GO:0004497 ... P00178 19397311 MOAD: ic50=0.035uM
    14018 3g5n:C (2.5) BS04 PB2 1.14.14.1 GO:0004497 ... P00178 19397311 MOAD: ic50=0.035uM
    14019 3g5n:C (2.5) BS06 PB2 1.14.14.1 GO:0004497 ... P00178 19397311 MOAD: ic50=0.035uM
    14020 3g5n:C (2.5) BS07 PB2 1.14.14.1 GO:0004497 ... P00178 19397311 MOAD: ic50=0.035uM
    14021 3g5n:D (2.5) BS01 PB2 1.14.14.1 GO:0004497 ... P00178 19397311 MOAD: ic50=0.035uM
    14022 3g5n:D (2.5) BS02 PB2 1.14.14.1 GO:0004497 ... P00178 19397311 MOAD: ic50=0.035uM
    14023 3g5n:D (2.5) BS03 PB2 1.14.14.1 GO:0004497 ... P00178 19397311 MOAD: ic50=0.035uM
    14024 3g5n:D (2.5) BS06 PB2 1.14.14.1 GO:0004497 ... P00178 19397311 MOAD: ic50=0.035uM
    14025 3g5n:D (2.5) BS07 PB2 1.14.14.1 GO:0004497 ... P00178 19397311 MOAD: ic50=0.035uM
    14026 3g5n:D (2.5) BS08 PB2 1.14.14.1 GO:0004497 ... P00178 19397311 MOAD: ic50=0.035uM
    14027 3g6g:A (2.31) BS01 G6G 2.7.10.2 GO:0004672 ... P00523 19276351 MOAD: ic50=2.8nM
    PDBbind: -logKd/Ki=8.55, IC50=2.8nM
    14028 3g6g:B (2.31) BS01 G6G 2.7.10.2 GO:0004672 ... P00523 19276351 MOAD: ic50=2.8nM
    14029 3g6h:B (2.35) BS01 G6H 2.7.10.2 GO:0004672 ... P00523 19276351 MOAD: ic50=4.6nM
    PDBbind: -logKd/Ki=8.19, IC50=6.4nM
    14030 3g6m:A (1.65) BS01 CFF 3.2.1.14 GO:0000272 ... A9LI60 20829286 MOAD: Ki=19.7mM
    PDBbind: -logKd/Ki=1.71, Ki=19.7mM
    14031 3g6m:A (1.65) BS02 CFF 3.2.1.14 GO:0000272 ... A9LI60 20829286 MOAD: Ki=19.7mM
    PDBbind: -logKd/Ki=1.71, Ki=19.7mM
    14032 3g6p:A (1.985) BS01 dna ? GO:0003700 ... P06536 19372434 PDBbind: Kd=0.44uM
    14033 3g6p:A (1.985) BS02 dna ? GO:0003700 ... P06536 19372434 PDBbind: Kd=0.44uM
    14034 3g6p:B (1.985) BS01 dna ? GO:0003700 ... P06536 19372434 PDBbind: Kd=0.44uM
    14035 3g6p:B (1.985) BS02 dna ? GO:0003700 ... P06536 19372434 PDBbind: Kd=0.44uM
    14036 3g6z:A (2.0) BS01 A7T 3.4.23.15 GO:0004190 ... P00797 19358611 MOAD: ic50=0.2nM
    PDBbind: -logKd/Ki=9.70, IC50=0.2nM
    BindingDB: IC50=19nM
    14037 3g6z:B (2.0) BS01 A7T 3.4.23.15 GO:0004190 ... P00797 19358611 MOAD: ic50=0.2nM
    BindingDB: IC50=19nM
    14038 3g70:A (2.0) BS01 A5T 3.4.23.15 GO:0004190 ... P00797 19358611 MOAD: ic50=0.4nM
    PDBbind: -logKd/Ki=9.40, IC50=0.4nM
    BindingDB: IC50=36nM
    14039 3g70:B (2.0) BS01 A5T 3.4.23.15 GO:0004190 ... P00797 19358611 MOAD: ic50=0.4nM
    BindingDB: IC50=36nM
    14040 3g72:A (1.9) BS01 A6T 3.4.23.15 GO:0004190 ... P00797 19358611 MOAD: ic50=0.8nM
    PDBbind: -logKd/Ki=9.10, IC50=0.8nM
    BindingDB: IC50=88nM
    14041 3g72:B (1.9) BS01 A6T 3.4.23.15 GO:0004190 ... P00797 19358611 MOAD: ic50=0.8nM
    BindingDB: IC50=88nM
    14042 3g73:A (2.21) BS01 dna ? GO:0000086 ... Q08050 20360045 PDBbind: Kd=7uM
    14043 3g73:A (2.21) BS02 dna ? GO:0000086 ... Q08050 20360045 PDBbind: Kd=7uM
    14044 3g73:B (2.21) BS01 dna ? GO:0000086 ... Q08050 20360045 PDBbind: Kd=7uM
    14045 3g73:B (2.21) BS02 dna ? GO:0000086 ... Q08050 20360045 PDBbind: Kd=7uM
    14046 3g76:A (3.0) BS02 CZ3 2.3.2.27 N/A P98170 19393243 PDBbind: -logKd/Ki=6.64, IC50=230.8nM
    14047 3g86:A (2.2) BS01 T18 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 19457662 MOAD: ic50=0.005uM
    PDBbind: -logKd/Ki=8.30, IC50=5nM
    14048 3g86:B (2.2) BS01 T18 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 19457662 MOAD: ic50=0.005uM
    14049 3g8e:A (3.0) BS01 IS1 2.4.2.12 GO:0000166 ... Q80Z29 19533035 PDBbind: -logKd/Ki=5.35, Kd=4.5uM
    14050 3g8e:B (3.0) BS01 IS1 2.4.2.12 GO:0000166 ... Q80Z29 19533035 PDBbind: -logKd/Ki=5.35, Kd=4.5uM
    14051 3g8e:B (3.0) BS02 IS1 2.4.2.12 GO:0000166 ... Q80Z29 19533035 PDBbind: -logKd/Ki=5.35, Kd=4.5uM
    14052 3g8i:A (2.2) BS02 RO7 ? GO:0003677 ... Q07869 19349176 MOAD: ic50=0.038uM
    PDBbind: -logKd/Ki=7.42, IC50=0.038uM
    BindingDB: IC50=38nM, EC50=103nM
    14053 3g8o:A (1.9) BS01 30X ? N/A P06401 19595590 MOAD: ic50=125nM
    PDBbind: -logKd/Ki=7.80, IC50=16nM
    BindingDB: IC50=125nM, EC50=1300nM
    14054 3g8o:B (1.9) BS01 30X ? N/A P06401 19595590 MOAD: ic50=125nM
    BindingDB: IC50=125nM, EC50=1300nM
    14055 3g8u:A (1.9) BS01 dna ? GO:0003700 ... P06536 19372434 PDBbind: Kd=0.89uM
    14056 3g8u:A (1.9) BS02 dna ? GO:0003700 ... P06536 19372434 PDBbind: Kd=0.89uM
    14057 3g8u:B (1.9) BS01 dna ? GO:0003700 ... P06536 19372434 PDBbind: Kd=0.89uM
    14058 3g8u:B (1.9) BS02 dna ? GO:0003700 ... P06536 19372434 PDBbind: Kd=0.89uM
    14059 3g90:X (2.4) BS01 J72 2.7.11.24 GO:0004672 ... P53779 19361991 MOAD: Ki=0.44uM
    PDBbind: -logKd/Ki=6.36, Ki=0.44uM
    14060 3g99:A (1.81) BS01 dna ? GO:0003700 ... P06536 19372434 PDBbind: Kd=0.08uM
    14061 3g99:A (1.81) BS02 dna ? GO:0003700 ... P06536 19372434 PDBbind: Kd=0.08uM
    14062 3g99:B (1.81) BS01 dna ? GO:0003700 ... P06536 19372434 PDBbind: Kd=0.08uM
    14063 3g99:B (1.81) BS02 dna ? GO:0003700 ... P06536 19372434 PDBbind: Kd=0.08uM
    14064 3g9e:A (2.3) BS02 RO7 ? GO:0003677 ... P37231 19349176 MOAD: ic50=0.019uM
    PDBbind: -logKd/Ki=7.72, IC50=0.019uM
    BindingDB: IC50=19nM, EC50=21nM
    14065 3g9l:X (2.2) BS01 J67 2.7.11.24 GO:0004672 ... P53779 19361991 MOAD: Ki=0.74uM
    PDBbind: -logKd/Ki=6.13, Ki=0.74uM
    BindingDB: Ki=740nM
    14066 3g9m:A (1.61) BS01 dna ? GO:0003700 ... P06536 19372434 PDBbind: Kd=0.15uM
    14067 3g9m:A (1.61) BS02 dna ? GO:0003700 ... P06536 19372434 PDBbind: Kd=0.15uM
    14068 3g9m:B (1.61) BS01 dna ? GO:0003700 ... P06536 19372434 PDBbind: Kd=0.15uM
    14069 3g9m:B (1.61) BS02 dna ? GO:0003700 ... P06536 19372434 PDBbind: Kd=0.15uM
    14070 3g9n:A (2.8) BS01 J88 2.7.11.24 GO:0004672 ... P53779 19361991 PDBbind: -logKd/Ki=5.74, Ki=1.8uM
    BindingDB: Ki=1800nM
    14071 3ga5:A (1.87) BS01 RGG ? GO:0006935 ... P23905 19292879 MOAD: Kd=3.2uM
    PDBbind: -logKd/Ki=5.49, Kd=3.2uM
    14072 3ga5:B (1.87) BS01 RGG ? GO:0006935 ... P23905 19292879 MOAD: Kd=3.2uM
    14073 3gam:A (1.98) BS01 MXX 1.10.5.1 GO:0001512 ... P16083 19265439 MOAD: ic50=4.1uM
    BindingDB: IC50=4100nM
    14074 3gam:A (1.98) BS04 MXX 1.10.5.1 GO:0001512 ... P16083 19265439 MOAD: ic50=4.1uM
    BindingDB: IC50=4100nM
    14075 3gam:B (1.98) BS01 MXX 1.10.5.1 GO:0001512 ... P16083 19265439 MOAD: ic50=4.1uM
    BindingDB: IC50=4100nM
    14076 3gam:B (1.98) BS02 MXX 1.10.5.1 GO:0001512 ... P16083 19265439 MOAD: ic50=4.1uM
    BindingDB: IC50=4100nM
    14077 3gay:A (1.8) BS02 P6T 4.1.2.13 GO:0004332 ... A8B2U2 19236002 MOAD: Kd=20nM
    14078 3gay:B (1.8) BS02 P6T 4.1.2.13 GO:0004332 ... A8B2U2 19236002 MOAD: Kd=20nM
    14079 3gb2:A (2.4) BS01 G3B 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P49841 19775160 MOAD: ic50=34nM
    PDBbind: -logKd/Ki=7.47, IC50=34nM
    14080 3gba:A (1.35) BS01 DYH ? GO:0015276 ... P22756 19297335 MOAD: Ki=0.848nM
    PDBbind: -logKd/Ki=9.07, Ki=0.848nM
    14081 3gba:B (1.35) BS01 DYH ? GO:0015276 ... P22756 19297335 MOAD: Ki=0.848nM
    14082 3gba:C (1.35) BS01 DYH ? GO:0015276 ... P22756 19297335 MOAD: Ki=0.848nM
    14083 3gba:D (1.35) BS01 DYH ? GO:0015276 ... P22756 19297335 MOAD: Ki=0.848nM
    14084 3gbb:A (2.1) BS01 MS8 ? GO:0015276 ... P22756 19297335 MOAD: Ki=126nM
    PDBbind: -logKd/Ki=6.90, Ki=126nM
    14085 3gbb:B (2.1) BS01 MS8 ? GO:0015276 ... P22756 19297335 MOAD: Ki=126nM
    14086 3gbe:A (1.7) BS01 NOJ 5.4.99.11 GO:0004556 ... D0VX20 19427862 MOAD: Ki=10uM
    PDBbind: -logKd/Ki=5.00, Ki=10uM
    14087 3gbk:A (2.3) BS01 2PQ ? GO:0003677 ... P37231 19301897 BindingDB: EC50=50nM
    14088 3gc4:A (1.8) BS01 AAQ 2.4.2.29 GO:0002099 ... P28720 19894214 MOAD: Ki=25nM
    PDBbind: -logKd/Ki=7.60, Ki=25nM
    14089 3gc5:A (1.4) BS02 2MQ 2.4.2.29 GO:0002099 ... P28720 19894214 MOAD: Ki=55nM
    PDBbind: -logKd/Ki=7.26, Ki=55nM
    14090 3gc7:A (1.8) BS01 B45 2.7.11.24 GO:0000077 ... Q16539 19622861 MOAD: ic50=0.4nM
    PDBbind: -logKd/Ki=9.22, IC50=0.6nM
    BindingDB: IC50=5.6nM
    14091 3gcj:A (2.34) BS03 SHA 1.11.1.7 GO:0004601 ... P80025 N/A BindingDB: IC50=4.0e+2nM
    14092 3gcp:A (2.25) BS01 SB2 2.7.11.24 GO:0000077 ... Q16539 19572644 MOAD: Kd=15nM
    PDBbind: -logKd/Ki=7.82, Kd=15nM
    14093 3gcq:A (2.0) BS01 1BU 2.7.11.24 GO:0000077 ... Q16539 19572644 MOAD: Kd=342nM
    PDBbind: -logKd/Ki=6.47, Kd=342nM
    BindingDB: IC50=800nM
    14094 3gcs:A (2.1) BS01 BAX 2.7.11.24 GO:0000077 ... Q16539 19572644 MOAD: Kd=56nM
    PDBbind: -logKd/Ki=7.25, Kd=56nM
    BindingDB: Kd=370nM, IC50=400nM
    14095 3gcu:A (2.1) BS01 R48 2.7.11.24 GO:0000077 ... Q16539 19572644 PDBbind: -logKd/Ki=6.78, Kd=165nM
    BindingDB: IC50=370nM
    14096 3gcu:B (2.1) BS01 R48 2.7.11.24 GO:0000077 ... Q16539 19572644 BindingDB: IC50=370nM
    14097 3gcv:A (2.3) BS01 SS6 2.7.11.24 GO:0000077 ... Q16539 19572644 MOAD: Kd=74nM
    PDBbind: -logKd/Ki=7.13, Kd=74nM
    BindingDB: IC50=420nM
    14098 3gdl:A (1.65) BS01 UP6 4.1.1.23 GO:0004590 ... P03962 19435314 BindingDB: Ki=64nM
    14099 3gdl:A (1.65) BS02 UP6 4.1.1.23 GO:0004590 ... P03962 19435314 BindingDB: Ki=64nM
    14100 3gdl:B (1.65) BS01 UP6 4.1.1.23 GO:0004590 ... P03962 19435314 BindingDB: Ki=64nM
    14101 3gdl:B (1.65) BS02 UP6 4.1.1.23 GO:0004590 ... P03962 19435314 BindingDB: Ki=64nM
    14102 3gdt:A (1.6) BS01 UP6 4.1.1.23 GO:0004590 ... P03962 19435314 PDBbind: -logKd/Ki=7.19, Ki=64nM
    BindingDB: Ki=64nM
    14103 3gdt:B (1.6) BS01 UP6 4.1.1.23 GO:0004590 ... P03962 19435314 BindingDB: Ki=64nM
    14104 3gdt:C (1.6) BS01 UP6 4.1.1.23 GO:0004590 ... P03962 19435314 BindingDB: Ki=64nM
    14105 3gdt:D (1.6) BS01 UP6 4.1.1.23 GO:0004590 ... P03962 19435314 PDBbind: -logKd/Ki=7.19, Ki=64nM
    BindingDB: Ki=64nM
    14106 3ge7:A (1.5) BS02 AFQ 2.4.2.29 GO:0002099 ... P28720 19894214 MOAD: Ki=2nM
    PDBbind: -logKd/Ki=8.70, Ki=2nM
    14107 3gen:A (1.6) BS01 B43 2.7.10.2 GO:0004672 ... Q06187 20052711 PDBbind: -logKd/Ki=9.14, IC50=0.72nM
    BindingDB: IC50=310nM
    14108 3gep:A (2.6) BS01 24H 2.4.2.8 GO:0000166 ... P00492 19527031 PDBbind: -logKd/Ki=3.75, Ki=176.8uM
    14109 3gey:A (2.2) BS01 P34 2.4.2.- GO:0003950 ... Q460N3 25635049 BindingDB: IC50=8913nM
    14110 3gey:B (2.2) BS01 P34 2.4.2.- GO:0003950 ... Q460N3 25635049 BindingDB: IC50=8913nM
    14111 3gf4:A (2.45) BS02 UPG 5.4.99.9 GO:0008767 ... Q48485 19500588 MOAD: Kd=750uM
    14112 3gfe:A (2.1) BS01 P37 2.7.11.24 GO:0000077 ... Q16539 19574047 MOAD: ic50=3.2nM
    PDBbind: -logKd/Ki=8.49, IC50=3.2nM
    BindingDB: IC50=3.2nM
    14113 3gfw:A (2.74) BS01 S22 2.7.12.1 GO:0004672 ... P33981 20383151 PDBbind: -logKd/Ki=7.57, Kd=27nM
    BindingDB: IC50=367nM
    14114 3ggc:B (2.78) BS01 H26 2.4.2.8 GO:0000166 ... P00492 19527031 PDBbind: -logKd/Ki=5.44, Ki=3.6uM
    14115 3ggj:A (2.6) BS01 25H 2.4.2.8 GO:0000166 ... P00492 19527031 PDBbind: -logKd/Ki=6.00, Ki=1uM
    14116 3ggu:A (1.8) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 19535439 PDBbind: -logKd/Ki=9.77, Ki=170pM
    14117 3ggu:B (1.8) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 19535439 MOAD: Ki=170pM
    PDBbind: -logKd/Ki=9.77, Ki=170pM
    14118 3ggv:A (3.09) BS01 GGV 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 19323562 PDBbind: -logKd/Ki=10.85, Ki=0.014nM
    14119 3ggv:B (3.09) BS01 GGV 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 19323562 PDBbind: -logKd/Ki=10.85, Ki=0.014nM
    14120 3ghc:A (1.3) BS01 GHC 1.5.1.3 GO:0000900 ... P00374 19719239 BindingDB: IC50=19nM
    14121 3ghr:A (1.0) BS02 LDT 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 19233199 BindingDB: IC50=30nM
    14122 3ghs:A (1.0) BS02 LDT 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 19233199 BindingDB: IC50=30nM
    14123 3ght:A (1.1) BS02 LDT 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 19233199 BindingDB: IC50=30nM
    14124 3ghu:A (1.2) BS02 LDT 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 19233199 BindingDB: IC50=30nM
    14125 3ghv:A (1.3) BS01 GHC 1.5.1.3 GO:0000900 ... P00374 19719239 BindingDB: IC50=19nM
    14126 3ghw:A (1.24) BS01 GHW 1.5.1.3 GO:0000900 ... P00374 19719239 MOAD: Kd=0.02uM
    BindingDB: IC50=20nM
    14127 3gi2:A (1.53) BS01 GHW 1.5.1.3 GO:0000900 ... P00374 19719239 BindingDB: IC50=20nM
    14128 3gi3:A (2.4) BS01 B10 2.7.11.24 GO:0000077 ... Q16539 19356929 MOAD: Kd<1.8nM
    14129 3gi4:A (1.85) BS01 K60 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 20237088 MOAD: Ki=0.016nM
    PDBbind: -logKd/Ki=10.80, Ki=16pM
    14130 3gi4:B (1.85) BS01 K60 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 20237088 PDBbind: -logKd/Ki=10.80, Ki=16pM
    14131 3gi5:A (1.8) BS01 K62 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 20237088 MOAD: Ki=0.006nM
    PDBbind: -logKd/Ki=11.22, Ki=6pM
    14132 3gi5:B (1.8) BS01 K62 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 20237088 PDBbind: -logKd/Ki=11.22, Ki=6pM
    14133 3gi6:A (1.84) BS01 D78 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 20237088 MOAD: Ki=0.006nM
    PDBbind: -logKd/Ki=11.22, Ki=6pM
    14134 3gi6:B (1.84) BS01 D78 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 20237088 PDBbind: -logKd/Ki=11.22, Ki=6pM
    14135 3gib:A (2.4) BS01 rna ? GO:0003723 ... P0A6X3 19889981 PDBbind: Kd=1.4nM
    14136 3gib:B (2.4) BS01 rna ? GO:0003723 ... P0A6X3 19889981 PDBbind: Kd=1.4nM
    14137 3gib:C (2.4) BS01 rna ? GO:0003723 ... P0A6X3 19889981 PDBbind: Kd=1.4nM
    14138 3gjd:A (2.0) BS03 LEU ? GO:0005886 ... O67854 19307590 PDBbind: -logKd/Ki=7.33, Kd=46.8nM
    14139 3gjw:A (2.3) BS01 GJW 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 19553114 MOAD: Ki=0.005uM
    PDBbind: -logKd/Ki=8.30, Ki=5nM
    BindingDB: EC50=6nM, Ki=5nM
    14140 3gk1:A (2.1) BS03 32A ? GO:0005509 ... P02638 19469484 MOAD: Kd=80uM
    PDBbind: -logKd/Ki=4.10, Kd=80uM
    14141 3gk2:A (1.984) BS03 27A ? GO:0005509 ... P02638 19469484 MOAD: Kd=2mM
    PDBbind: -logKd/Ki=2.70, Kd=2mM
    14142 3gk4:X (1.9) BS03 53A ? GO:0005509 ... P02638 19469484 MOAD: Kd=120uM
    PDBbind: -logKd/Ki=3.92, Kd=120uM
    14143 3gkz:A (1.9) BS01 B40 N/A N/A N/A 19760665 MOAD: Kd=10nM
    PDBbind: -logKd/Ki=8.00, Kd=10nM
    14144 3glf:A (3.388) BS01 dna 2.7.7.7 GO:0003677 ... P28630 19450514 PDBbind: Kd=0.18uM
    14145 3glf:B (3.388) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514 PDBbind: Kd=0.18uM
    14146 3glf:C (3.388) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514 PDBbind: Kd=0.18uM
    14147 3glf:D (3.388) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514 PDBbind: Kd=0.18uM
    14148 3glf:E (3.388) BS01 dna 2.7.7.7 GO:0003677 ... P28631 19450514 PDBbind: Kd=0.18uM
    14149 3glf:F (3.388) BS01 dna 2.7.7.7 GO:0003677 ... P28630 19450514 PDBbind: Kd=0.18uM
    14150 3glf:G (3.388) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514 PDBbind: Kd=0.18uM
    14151 3glf:H (3.388) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514 PDBbind: Kd=0.18uM
    14152 3glf:I (3.388) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514 PDBbind: Kd=0.18uM
    14153 3glf:J (3.388) BS01 dna 2.7.7.7 GO:0003677 ... P28631 19450514 PDBbind: Kd=0.18uM
    14154 3gli:A (3.5) BS01 dna 2.7.7.7 GO:0003677 ... P28630 19450514 PDBbind: Kd=0.38uM
    14155 3gli:B (3.5) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514 PDBbind: Kd=0.38uM
    14156 3gli:C (3.5) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514 PDBbind: Kd=0.38uM
    14157 3gli:D (3.5) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514 PDBbind: Kd=0.38uM
    14158 3gli:E (3.5) BS01 dna 2.7.7.7 GO:0003677 ... P28631 19450514 PDBbind: Kd=0.38uM
    14159 3gli:F (3.5) BS01 dna 2.7.7.7 GO:0003677 ... P28630 19450514 PDBbind: Kd=0.38uM
    14160 3gli:G (3.5) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514 PDBbind: Kd=0.38uM
    14161 3gli:H (3.5) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514 PDBbind: Kd=0.38uM
    14162 3gli:I (3.5) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514 PDBbind: Kd=0.38uM
    14163 3gli:J (3.5) BS01 dna 2.7.7.7 GO:0003677 ... P28631 19450514 PDBbind: Kd=0.38uM
    14164 3gm0:A (2.4) BS01 B41 N/A N/A N/A 19760665 MOAD: Kd=17nM
    PDBbind: -logKd/Ki=7.77, Kd=17nM
    14165 3gn0:A (1.7) BS03 DMO 3.5.3.1 GO:0000050 ... P05089 21728378 MOAD: Ki=3.9mM
    14166 3gn0:B (1.7) BS03 DMO 3.5.3.1 GO:0000050 ... P05089 21728378 MOAD: Ki=3.9mM
    14167 3gn1:C (2.0) BS02 AX7 ? GO:0000166 ... O76290 19527033 MOAD: Ki=288uM
    BindingDB: Ki=288000nM
    14168 3gn1:D (2.0) BS02 AX7 ? GO:0000166 ... O76290 19527033 MOAD: Ki=288uM
    BindingDB: Ki=288000nM
    14169 3gn2:A (1.6) BS02 AX8 ? GO:0000166 ... O76290 19527033 MOAD: Ki=0.4uM
    BindingDB: Ki=400nM
    14170 3gn2:A (1.6) BS03 AX8 ? GO:0000166 ... O76290 19527033 MOAD: Ki=0.4uM
    BindingDB: Ki=400nM
    14171 3gn2:B (1.6) BS02 AX8 ? GO:0000166 ... O76290 19527033 MOAD: Ki=0.4uM
    BindingDB: Ki=400nM
    14172 3gn2:C (1.6) BS02 AX8 ? GO:0000166 ... O76290 19527033 MOAD: Ki=0.4uM
    BindingDB: Ki=400nM
    14173 3gn2:D (1.6) BS02 AX8 ? GO:0000166 ... O76290 19527033 MOAD: Ki=0.4uM
    BindingDB: Ki=400nM
    14174 3gn2:D (1.6) BS03 AX8 ? GO:0000166 ... O76290 19527033 MOAD: Ki=0.4uM
    BindingDB: Ki=400nM
    14175 3gn7:A (2.5) BS01 3GN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 N/A PDBbind: -logKd/Ki=8.30, Ki=5nM
    BindingDB: Ki=4nM
    14176 3gni:B (2.35) BS01 ATP ? GO:0004672 ... Q7RTN6 19513107 MOAD: Kd=0.02uM
    14177 3gnv:A (2.75) BS01 XNZ 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... O92972 19507864 PDBbind: -logKd/Ki=7.03, IC50=93nM
    14178 3gnw:A (2.39) BS01 XNC 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... O92972 19507864 MOAD: Kd=0.79nM
    PDBbind: -logKd/Ki=9.10, Kd=0.79nM
    14179 3gnw:B (2.39) BS01 XNC 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... O92972 19507864 MOAD: Kd=0.79nM
    14180 3goi:A (2.52) BS02 LOI 2.7.1.1 GO:0001678 ... P35557 19362831 BindingDB: EC50=330nM
    14181 3gok:A (3.2) BS01 P4O 2.7.11.1 GO:0004672 ... P49137 N/A BindingDB: IC50=8.5nM, EC50=49nM
    14182 3gok:B (3.2) BS01 P4O 2.7.11.1 GO:0004672 ... P49137 N/A BindingDB: IC50=8.5nM, EC50=49nM
    14183 3gok:C (3.2) BS01 P4O 2.7.11.1 GO:0004672 ... P49137 N/A BindingDB: IC50=8.5nM, EC50=49nM
    14184 3gok:D (3.2) BS01 P4O 2.7.11.1 GO:0004672 ... P49137 N/A BindingDB: IC50=8.5nM, EC50=49nM
    14185 3gok:E (3.2) BS01 P4O 2.7.11.1 GO:0004672 ... P49137 N/A BindingDB: IC50=8.5nM, EC50=49nM
    14186 3gok:F (3.2) BS01 P4O 2.7.11.1 GO:0004672 ... P49137 N/A BindingDB: IC50=8.5nM, EC50=49nM
    14187 3gok:G (3.2) BS01 P4O 2.7.11.1 GO:0004672 ... P49137 N/A BindingDB: IC50=8.5nM, EC50=49nM
    14188 3gok:H (3.2) BS01 P4O 2.7.11.1 GO:0004672 ... P49137 N/A BindingDB: IC50=8.5nM, EC50=49nM
    14189 3gok:I (3.2) BS01 P4O 2.7.11.1 GO:0004672 ... P49137 N/A BindingDB: IC50=8.5nM, EC50=49nM
    14190 3gok:J (3.2) BS01 P4O 2.7.11.1 GO:0004672 ... P49137 N/A BindingDB: IC50=8.5nM, EC50=49nM
    14191 3gok:K (3.2) BS01 P4O 2.7.11.1 GO:0004672 ... P49137 N/A BindingDB: IC50=8.5nM, EC50=49nM
    14192 3gok:L (3.2) BS01 P4O 2.7.11.1 GO:0004672 ... P49137 N/A BindingDB: IC50=8.5nM, EC50=49nM
    14193 3gol:A (2.85) BS01 XND 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... O92972 19342234 PDBbind: -logKd/Ki=7.09, IC50=0.081uM
    14194 3gp0:A (1.9) BS01 NIL 2.7.11.24 GO:0000165 ... Q15759 N/A PDBbind: -logKd/Ki=7.44, Kd=36nM
    BindingDB: Kd=36nM
    14195 3gpb:A (2.3) BS01 G1P 2.4.1.1 GO:0000166 ... P00489 2125493 MOAD: Kd=9.5mM
    14196 3gpb:A (2.3) BS02 G1P 2.4.1.1 GO:0000166 ... P00489 2125493 MOAD: Kd=9.5mM
    14197 3gpe:A (2.0) BS05 PT5 2.7.11.13 N/A P05696 19346474 PDBbind: -logKd/Ki=5.74, Kd=1.8uM
    14198 3gph:A (2.7) BS02 OID 1.14.13.n7
    1.14.14.1    		 GO:0001676 ... P05181 20463018 BindingDB: Kd=9.0e+3nM
    14199 3gph:B (2.7) BS02 OID 1.14.13.n7
    1.14.14.1    		 GO:0001676 ... P05181 20463018 BindingDB: Kd=9.0e+3nM
    14200 3gpj:H (2.7) BS01 SY2 3.4.25.1 GO:0004298 ... P25043 19359491 PDBbind: -logKd/Ki=5.11, Ki=7.8uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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