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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 48291 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    13201 3e5u:D (1.83) BS02 3C4 ? GO:0003677 ... B8FW11 18717788 PDBbind: -logKd/Ki=5.85, Kd=1.4uM
    13202 3e62:A (1.922) BS01 5B1 2.7.10.2 GO:0004672 ... O60674 19019674 MOAD: ic50=40.9uM
    PDBbind: -logKd/Ki=4.39, IC50=40.9uM
    BindingDB: IC50=40900nM
    13203 3e63:A (1.9) BS01 5B2 2.7.10.2 GO:0004672 ... O60674 19019674 MOAD: ic50=1.6uM
    PDBbind: -logKd/Ki=5.80, IC50=1.6uM
    BindingDB: IC50=1600nM
    13204 3e64:A (1.8) BS01 5B3 2.7.10.2 GO:0004672 ... O60674 19019674 MOAD: ic50=0.078uM
    PDBbind: -logKd/Ki=7.11, Kd=0.078uM
    BindingDB: IC50=78nM
    13205 3e65:A (2.05) BS03 XXZ 1.14.13.39 GO:0004517 ... P29477 18849972 MOAD: ic50=0.13uM
    13206 3e65:B (2.05) BS03 XXZ 1.14.13.39 GO:0004517 ... P29477 18849972 MOAD: ic50=0.13uM
    13207 3e68:A (2.2) BS01 AT6 1.14.13.39 GO:0004517 ... P29477 18849972 MOAD: ic50=0.12uM
    13208 3e68:B (2.2) BS01 AT6 1.14.13.39 GO:0004517 ... P29477 18849972 MOAD: ic50=0.12uM
    13209 3e6k:A (2.1) BS03 ABH 3.5.3.1 GO:0000050 ... P05089 19093830 MOAD: Kd=7000nM
    PDBbind: -logKd/Ki=5.15, Kd=7uM
    13210 3e6k:B (2.1) BS03 ABH 3.5.3.1 GO:0000050 ... P05089 19093830 MOAD: Kd=7000nM
    13211 3e6l:A (2.3) BS03 A11 1.14.13.39 GO:0004517 ... P29477 18849972 MOAD: ic50=0.72uM
    13212 3e6l:B (2.3) BS03 A11 1.14.13.39 GO:0004517 ... P29477 18849972 MOAD: ic50=0.72uM
    13213 3e6n:A (2.4) BS03 AS3 1.14.13.39 GO:0004517 ... P29477 18849972 MOAD: ic50=0.015uM
    13214 3e6n:B (2.4) BS03 AS3 1.14.13.39 GO:0004517 ... P29477 18849972 MOAD: ic50=0.015uM
    13215 3e6t:A (2.5) BS03 1A2 1.14.13.39 GO:0004517 ... P29477 18849972 MOAD: ic50=1.2uM
    13216 3e6t:B (2.5) BS03 1A2 1.14.13.39 GO:0004517 ... P29477 18849972 MOAD: ic50=1.2uM
    13217 3e6v:A (1.72) BS03 ABH 3.5.3.1 GO:0000050 ... P05089 19093830 MOAD: Kd=147nM
    PDBbind: -logKd/Ki=6.83, Kd=147nM
    13218 3e6v:B (1.72) BS03 ABH 3.5.3.1 GO:0000050 ... P05089 19093830 MOAD: Kd=147nM
    13219 3e6y:A (2.5) BS02 CW1 ? GO:0005737 ... P93343 19244612 MOAD: Kd=2.5uM
    PDBbind: -logKd/Ki=5.60, Kd=2.5uM
    13220 3e6y:B (2.5) BS02 CW1 ? GO:0005737 ... P93343 19244612 MOAD: Kd=2.5uM
    13221 3e73:A (2.8) BS02 GSH 2.5.1.18 GO:0004364 ... O43813 19528316 PDBbind: -logKd/Ki=3.15, Kd=0.7mM
    13222 3e7b:A (1.7) BS03 E7B 3.1.3.16 GO:0016787 ... P62136 18992256 MOAD: ic50=0.16nM
    PDBbind: -logKd/Ki=9.80, IC50=0.16nM
    13223 3e7b:B (1.7) BS03 E7B 3.1.3.16 GO:0016787 ... P62136 18992256 MOAD: ic50=0.16nM
    13224 3e7c:A (2.15) BS02 866 ? N/A P04150 18952422 BindingDB: EC50=2nM, IC50=3.16nM
    13225 3e7c:B (2.15) BS02 866 ? N/A P04150 18952422 BindingDB: EC50=2nM, IC50=3.16nM
    13226 3e7f:A (2.2) BS02 6PG 3.1.1.31 GO:0005737 ... Q9GRG6 19345229 BindingDB: Kd=10000nM
    13227 3e7f:B (2.2) BS02 6PG 3.1.1.31 GO:0005737 ... Q9GRG6 19345229 BindingDB: Kd=10000nM
    13228 3e7g:A (2.2) BS04 AT2 1.14.13.39 GO:0004517 ... P35228 18849972 MOAD: ic50=0.35uM
    BindingDB: IC50=350nM
    13229 3e7g:B (2.2) BS03 AT2 1.14.13.39 GO:0004517 ... P35228 18849972 MOAD: ic50=0.35uM
    BindingDB: IC50=350nM
    13230 3e7g:C (2.2) BS04 AT2 1.14.13.39 GO:0004517 ... P35228 18849972 MOAD: ic50=0.35uM
    BindingDB: IC50=350nM
    13231 3e7g:D (2.2) BS05 AT2 1.14.13.39 GO:0004517 ... P35228 18849972 MOAD: ic50=0.35uM
    BindingDB: IC50=350nM
    13232 3e7o:A (2.14) BS01 35F 2.7.11.24 GO:0004672 ... P45984 18801372 MOAD: ic50=120nM
    PDBbind: -logKd/Ki=6.92, IC50=120nM
    13233 3e7o:B (2.14) BS01 35F 2.7.11.24 GO:0004672 ... P45984 18801372 MOAD: ic50=120nM
    13234 3e81:A (1.629) BS03 SLB 3.1.3.103 GO:0016787 ... Q8A712 18986982 PDBbind: -logKd/Ki=1.43, Ki=37mM
    13235 3e81:A (1.629) BS04 SLB 3.1.3.103 GO:0016787 ... Q8A712 18986982 PDBbind: -logKd/Ki=1.43, Ki=37mM
    13236 3e81:B (1.629) BS01 SLB 3.1.3.103 GO:0016787 ... Q8A712 18986982 PDBbind: -logKd/Ki=1.43, Ki=37mM
    13237 3e81:B (1.629) BS04 SLB 3.1.3.103 GO:0016787 ... Q8A712 18986982 PDBbind: -logKd/Ki=1.43, Ki=37mM
    13238 3e85:A (1.95) BS01 BSU 3.1.27.- GO:0004518 ... Q9LLQ2 19220853 MOAD: Kd=4.2uM
    PDBbind: -logKd/Ki=5.38, Kd=4.2uM
    13239 3e85:A (1.95) BS02 BSU 3.1.27.- GO:0004518 ... Q9LLQ2 19220853 MOAD: Kd=4.2uM
    PDBbind: -logKd/Ki=5.38, Kd=4.2uM
    13240 3e85:A (1.95) BS03 BSU 3.1.27.- GO:0004518 ... Q9LLQ2 19220853 MOAD: Kd=4.2uM
    PDBbind: -logKd/Ki=5.38, Kd=4.2uM
    13241 3e85:A (1.95) BS04 BSU 3.1.27.- GO:0004518 ... Q9LLQ2 19220853 MOAD: Kd=4.2uM
    PDBbind: -logKd/Ki=5.38, Kd=4.2uM
    13242 3e88:A (2.5) BS02 G96 2.7.11.1 GO:0004672 ... P31751 19179070 MOAD: Ki=2nM
    BindingDB: Ki=2nM, IC50=10nM
    13243 3e88:B (2.5) BS02 G96 2.7.11.1 GO:0004672 ... P31751 19179070 MOAD: Ki=2nM
    BindingDB: Ki=2nM, IC50=10nM
    13244 3e8n:A (2.5) BS03 VRA 2.7.12.2 GO:0004672 ... Q02750 19706763 MOAD: ic50=19nM
    PDBbind: -logKd/Ki=7.72, IC50=19nM
    13245 3e8r:A (1.9) BS02 615 3.4.24.86 GO:0004222 ... P78536 18835710 PDBbind: -logKd/Ki=9.74, Ki=0.18nM
    BindingDB: Ki=0.180000nM
    13246 3e8r:B (1.9) BS02 615 3.4.24.86 GO:0004222 ... P78536 18835710 BindingDB: Ki=0.180000nM
    13247 3e90:A (2.45) BS01 NKK 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004252 ... P06935 19059417 PDBbind: -logKd/Ki=7.39, Ki=41nM
    13248 3e90:B (2.45) BS01 NKK 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P06935 19059417 PDBbind: -logKd/Ki=7.39, Ki=41nM
    13249 3e92:A (2.0) BS01 G6A 2.7.11.24 GO:0000077 ... Q16539 18789685 MOAD: Ki=10nM
    PDBbind: -logKd/Ki=8.00, Ki=10nM
    BindingDB: Ki=10.0nM
    13250 3e93:A (2.0) BS01 19B 2.7.11.24 GO:0000077 ... Q16539 18789685 MOAD: Ki=1.4nM
    PDBbind: -logKd/Ki=8.85, Ki=1.4nM
    BindingDB: Ki=1.4nM
    13251 3e9b:A (2.15) BS03 S2C 3.5.3.1 GO:0000050 ... P07824 19093830 MOAD: Ki=4500nM
    PDBbind: -logKd/Ki=5.35, Ki=4.5uM
    13252 3e9b:B (2.15) BS03 S2C 3.5.3.1 GO:0000050 ... P07824 19093830 MOAD: Ki=4500nM
    13253 3e9b:C (2.15) BS03 S2C 3.5.3.1 GO:0000050 ... P07824 19093830 MOAD: Ki=4500nM
    13254 3e9h:A (2.1) BS02 KAA 6.1.1.6 GO:0000049 ... Q9RHV9 19174549 PDBbind: -logKd/Ki=7.55, Ki=28nM
    13255 3e9i:A (2.2) BS01 XAH 6.1.1.6 GO:0000049 ... Q9RHV9 19174549 PDBbind: -logKd/Ki=6.22, Ki=0.6uM
    13256 3e9k:A (1.7) BS02 3XH 3.7.1.3 GO:0005654 ... Q16719 19143568 MOAD: Ki=60uM
    BindingDB: Ki=60000nM
    13257 3e9s:A (2.5) BS01 TTT 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69    		 GO:0006508 ... P0C6U8 N/A BindingDB: IC50=600nM
    13258 3ea4:A (2.8) BS01 2SM 2.2.1.6 GO:0000287 ... P17597 19187232 BindingDB: Ki=8530nM
    13259 3eah:A (2.44) BS03 327 1.14.13.39 GO:0004517 ... P29474 18849972 MOAD: ic50=0.04uM
    13260 3eah:B (2.44) BS03 327 1.14.13.39 GO:0004517 ... P29474 18849972 MOAD: ic50=0.04uM
    13261 3eai:A (2.2) BS03 328 1.14.13.39 GO:0004517 ... P29477 18849972 MOAD: ic50=0.074uM
    13262 3eai:B (2.2) BS03 328 1.14.13.39 GO:0004517 ... P29477 18849972 MOAD: ic50=0.074uM
    13263 3eax:A (1.9) BS01 LZP 3.1.3.48 GO:0004725 ... P18031 19012396 MOAD: Ki=12uM
    PDBbind: -logKd/Ki=4.92, Ki=12uM
    13264 3eb1:A (2.4) BS01 LZQ 3.1.3.48 GO:0004725 ... P18031 19012396 MOAD: Ki=16.3uM
    PDBbind: -logKd/Ki=4.79, Ki=16.3uM
    BindingDB: IC50=20000nM
    13265 3ebd:A (2.4) BS03 329 1.14.13.39 GO:0004517 ... P29477 18849972 MOAD: ic50=0.04uM
    13266 3ebd:B (2.4) BS03 329 1.14.13.39 GO:0004517 ... P29477 18849972 MOAD: ic50=0.04uM
    13267 3ebf:A (2.29) BS03 332 1.14.13.39 GO:0004517 ... P29477 18849972 MOAD: ic50=0.4uM
    13268 3ebf:B (2.29) BS03 332 1.14.13.39 GO:0004517 ... P29477 18849972 MOAD: ic50=0.4uM
    13269 3ebh:A (1.65) BS02 BES 3.4.11.- GO:0006508 ... O96935 19196988 MOAD: Ki=478.2nM
    PDBbind: -logKd/Ki=6.32, Ki=478.2nM
    BindingDB: Ki=190nM, IC50=284nM
    13270 3ebi:A (2.0) BS02 BEY 3.4.11.- GO:0006508 ... O96935 19196988 MOAD: Ki=79nM
    PDBbind: -logKd/Ki=7.10, Ki=79nM
    13271 3ebl:A (1.9) BS01 GA4 3.-.-.- GO:0005634 ... Q6L545 19037316 MOAD: Kd=0.5uM
    PDBbind: -logKd/Ki=6.30, Kd=0.5uM
    13272 3ebl:B (1.9) BS01 GA4 3.-.-.- GO:0005634 ... Q6L545 19037316 MOAD: Kd=0.5uM
    13273 3ebl:C (1.9) BS01 GA4 3.-.-.- GO:0005634 ... Q6L545 19037316 MOAD: Kd=0.5uM
    13274 3ebl:D (1.9) BS01 GA4 3.-.-.- GO:0005634 ... Q6L545 19037316 MOAD: Kd=0.5uM
    13275 3ebl:E (1.9) BS01 GA4 3.-.-.- GO:0005634 ... Q6L545 19037316 MOAD: Kd=0.5uM
    13276 3ebl:F (1.9) BS01 GA4 3.-.-.- GO:0005634 ... Q6L545 19037316 MOAD: Kd=0.5uM
    13277 3ebo:A (1.9) BS01 57D 2.4.1.1 GO:0000166 ... P00489 23279842 PDBbind: -logKd/Ki=4.72, Ki=19.01uM
    13278 3ebp:A (2.0) BS01 CPB 2.4.1.1 GO:0000166 ... P00489 23279842 PDBbind: -logKd/Ki=5.91, Ki=1.24uM
    BindingDB: IC50=1200nM
    13279 3ebs:A (2.15) BS02 N4E 1.14.14.- GO:0004497 ... P11509 18779312 MOAD: Kd=21uM
    13280 3ebs:B (2.15) BS02 N4E 1.14.14.- GO:0004497 ... P11509 18779312 MOAD: Kd=21uM
    13281 3ebs:D (2.15) BS02 N4E 1.14.14.- GO:0004497 ... P11509 18779312 MOAD: Kd=21uM
    13282 3ecn:A (2.1) BS01 IBM 3.1.4.53 GO:0004114 ... O60658 18983167 MOAD: ic50=698uM
    PDBbind: -logKd/Ki=3.16, IC50=698uM
    BindingDB: IC50=700000nM
    13283 3ecn:B (2.1) BS01 IBM 3.1.4.53 GO:0004114 ... O60658 18983167 MOAD: ic50=698uM
    BindingDB: IC50=700000nM
    13284 3ed0:A (2.3) BS01 EMO 4.2.1.59 GO:0005737 ... Q5G940 19433000 MOAD: Kd=0.45uM
    PDBbind: -logKd/Ki=6.35, Kd=0.45uM
    13285 3ed0:B (2.3) BS01 EMO 4.2.1.59 GO:0005737 ... Q5G940 19433000 PDBbind: -logKd/Ki=6.35, Kd=0.45uM
    13286 3ed0:C (2.3) BS01 EMO 4.2.1.59 GO:0005737 ... Q5G940 19433000 MOAD: Kd=0.45uM
    13287 3edl:B (28.0) BS02 TA1 ? GO:0000226 ... P02554 19000825 BindingDB: EC50=520nM
    13288 3edz:B (1.9) BS02 550 3.4.24.86 GO:0004222 ... P78536 18835710 BindingDB: Ki=8nM
    13289 3ee2:A (1.91) BS02 NZO 2.5.1.18
    5.3.99.2    		 GO:0000287 ... O60760 19939518 MOAD: ic50~65uM
    PDBbind: -logKd/Ki=4.19, IC50=65uM
    13290 3eeb:A (2.1) BS01 IHP 2.3.1.-
    3.4.22.-
    6.3.2.-    		 N/A Q9KS12 18845756 MOAD: Kd=1.3uM
    PDBbind: -logKd/Ki=5.89, Kd=1.3uM
    13291 3eeb:B (2.1) BS01 IHP 2.3.1.-
    3.4.22.-
    6.3.2.-    		 N/A Q9KS12 18845756 MOAD: Kd=1.3uM
    13292 3eej:A (2.11) BS02 53R 1.5.1.3 GO:0000166 ... Q6FPH0 19152636 MOAD: ic50=7.3nM
    BindingDB: IC50=7.3nM
    13293 3eej:B (2.11) BS02 53R 1.5.1.3 GO:0000166 ... Q6FPH0 19152636 MOAD: ic50=7.3nM
    BindingDB: IC50=7.3nM
    13294 3eek:A (2.03) BS02 53S 1.5.1.3 GO:0000166 ... Q6FPH0 19152636 MOAD: ic50=0.61nM
    BindingDB: IC50=0.61nM
    13295 3eek:B (2.03) BS02 53S 1.5.1.3 GO:0000166 ... Q6FPH0 19152636 MOAD: ic50=0.61nM
    BindingDB: IC50=0.61nM
    13296 3eel:A (1.95) BS02 53T 1.5.1.3 GO:0000166 ... Q6FPH0 19152636 MOAD: ic50=0.55nM
    BindingDB: IC50=0.55nM
    13297 3eel:B (1.95) BS02 53T 1.5.1.3 GO:0000166 ... Q6FPH0 19152636 MOAD: ic50=0.55nM
    BindingDB: IC50=0.55nM
    13298 3eem:A (2.11) BS02 53V 1.5.1.3 GO:0000166 ... Q6FPH0 19152636 MOAD: ic50=5.5nM
    13299 3eem:B (2.11) BS02 53V 1.5.1.3 GO:0000166 ... Q6FPH0 19152636 MOAD: ic50=5.5nM
    13300 3efj:A (2.6) BS01 MT3 2.7.10.1 GO:0004672 ... P08581 18763753 PDBbind: -logKd/Ki=7.41, Ki=39nM
    BindingDB: IC50=39nM, Ki=39nM
    13301 3efj:B (2.6) BS01 MT3 2.7.10.1 GO:0004672 ... P08581 18763753 PDBbind: -logKd/Ki=7.41, Ki=39nM
    BindingDB: IC50=39nM, Ki=39nM
    13302 3efk:A (2.2) BS01 MT4 2.7.10.1 GO:0004672 ... P08581 18763753 MOAD: Ki=14nM
    PDBbind: -logKd/Ki=7.85, Ki=14nM
    BindingDB: Ki=14nM, IC50=14nM
    13303 3efk:B (2.2) BS01 MT4 2.7.10.1 GO:0004672 ... P08581 18763753 MOAD: Ki=14nM
    PDBbind: -logKd/Ki=7.85, Ki=14nM
    BindingDB: Ki=14nM, IC50=14nM
    13304 3efl:A (2.2) BS01 706 2.7.10.1 GO:0004672 ... P35968 N/A BindingDB: IC50=3nM, Kd=26nM, Ki=3.00nM
    13305 3efl:B (2.2) BS01 706 2.7.10.1 GO:0004672 ... P35968 N/A BindingDB: IC50=3nM, Kd=26nM, Ki=3.00nM
    13306 3efr:A (2.55) BS01 BTN 6.3.4.15 GO:0004077 ... O66837 19385043 PDBbind: -logKd/Ki=5.08, Kd=8.3uM
    13307 3efs:A (2.3) BS01 ATP 6.3.4.15 GO:0004077 ... O66837 19385043 MOAD: Kd=7.2uM
    PDBbind: -logKd/Ki=5.34, Kd=4.6uM
    13308 3efs:A (2.3) BS02 BTN 6.3.4.15 GO:0004077 ... O66837 19385043 MOAD: Kd=3.5uM
    13309 3efs:A (2.3) BS03 ATP 6.3.4.15 GO:0004077 ... O66837 19385043 MOAD: Kd=7.2uM
    PDBbind: -logKd/Ki=5.34, Kd=4.6uM
    13310 3efs:B (2.3) BS01 ATP 6.3.4.15 GO:0004077 ... O66837 19385043 MOAD: Kd=7.2uM
    13311 3efs:B (2.3) BS02 ATP 6.3.4.15 GO:0004077 ... O66837 19385043 MOAD: Kd=7.2uM
    13312 3efs:B (2.3) BS03 BTN 6.3.4.15 GO:0004077 ... O66837 19385043 MOAD: Kd=3.5uM
    13313 3eft:A (1.85) BS02 3BS 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 19778001 MOAD: Ki=12nM
    PDBbind: -logKd/Ki=7.92, Ki=12nM
    13314 3efw:A (2.29) BS01 AK8 2.7.11.1 GO:0000212 ... O14965 19062275 PDBbind: -logKd/Ki=8.40, IC50=4nM
    13315 3egk:H (2.2) BS03 M18 3.4.21.5 GO:0004252 ... P00734 17955562 MOAD: Ki=22uM
    PDBbind: -logKd/Ki=4.66, Ki=22uM
    13316 3egt:A (2.0) BS03 722 2.5.1.10 GO:0004161 ... Q86C09 19309137 MOAD: Ki=1.26nM
    PDBbind: -logKd/Ki=8.90, Ki=1.26nM
    13317 3egt:B (2.0) BS01 722 2.5.1.10 GO:0004161 ... Q86C09 19309137 MOAD: Ki=1.26nM
    PDBbind: -logKd/Ki=8.90, Ki=1.26nM
    13318 3egt:B (2.0) BS04 722 2.5.1.10 GO:0004161 ... Q86C09 19309137 MOAD: Ki=1.26nM
    PDBbind: -logKd/Ki=8.90, Ki=1.26nM
    13319 3egz:A (2.2) BS01 rna ? GO:0003676 ... P09012 18940672 PDBbind: Kd=0.6nM
    13320 3eh8:A (2.7) BS01 dna 3.1.-.- GO:0004519 ... P03880 19103658 PDBbind: Kd=12nM
    13321 3eh8:A (2.7) BS02 dna 3.1.-.- GO:0004519 ... P03880 19103658 PDBbind: Kd=12nM
    13322 3eh8:D (2.7) BS01 dna 3.1.-.- GO:0004519 ... P03880 19103658 PDBbind: Kd=12nM
    13323 3eh8:D (2.7) BS02 dna 3.1.-.- GO:0004519 ... P03880 19103658 PDBbind: Kd=12nM
    13324 3eh8:G (2.7) BS01 dna 3.1.-.- GO:0004519 ... P03880 19103658 PDBbind: Kd=12nM
    13325 3eh8:G (2.7) BS02 dna 3.1.-.- GO:0004519 ... P03880 19103658 PDBbind: Kd=12nM
    13326 3ehw:A (1.8) BS01 DUP 3.6.1.23 GO:0000287 ... P33316 N/A PDBbind: -logKd/Ki=4.82, IC50=15.2uM
    13327 3ehw:A (1.8) BS02 DUP 3.6.1.23 GO:0000287 ... P33316 N/A PDBbind: -logKd/Ki=4.82, IC50=15.2uM
    13328 3ehw:A (1.8) BS03 DUP 3.6.1.23 GO:0000287 ... P33316 N/A PDBbind: -logKd/Ki=4.82, IC50=15.2uM
    13329 3ehw:B (1.8) BS01 DUP 3.6.1.23 GO:0000287 ... P33316 N/A PDBbind: -logKd/Ki=4.82, IC50=15.2uM
    13330 3ehw:B (1.8) BS02 DUP 3.6.1.23 GO:0000287 ... P33316 N/A PDBbind: -logKd/Ki=4.82, IC50=15.2uM
    13331 3ehw:B (1.8) BS03 DUP 3.6.1.23 GO:0000287 ... P33316 N/A PDBbind: -logKd/Ki=4.82, IC50=15.2uM
    13332 3ehw:C (1.8) BS01 DUP 3.6.1.23 GO:0000287 ... P33316 N/A PDBbind: -logKd/Ki=4.82, IC50=15.2uM
    13333 3ehw:C (1.8) BS02 DUP 3.6.1.23 GO:0000287 ... P33316 N/A PDBbind: -logKd/Ki=4.82, IC50=15.2uM
    13334 3ehw:C (1.8) BS03 DUP 3.6.1.23 GO:0000287 ... P33316 N/A PDBbind: -logKd/Ki=4.82, IC50=15.2uM
    13335 3ehx:A (1.9) BS06 BDL 3.4.24.65 GO:0004222 ... P39900 19275207 MOAD: Ki=25nM
    PDBbind: -logKd/Ki=7.60, Ki=25nM
    13336 3ehy:A (1.9) BS06 TBL 3.4.24.65 GO:0004222 ... P39900 19275207 MOAD: Ki=1.4uM
    PDBbind: -logKd/Ki=5.85, Ki=1.4uM
    13337 3eid:A (3.15) BS01 PO5 2.7.11.22 GO:0000082 ... P24941 18835709 PDBbind: -logKd/Ki=6.35, IC50=0.45uM
    BindingDB: IC50=450nM
    13338 3eig:A (1.7) BS01 MTX 1.5.1.3 GO:0000900 ... P00374 19478082 MOAD: Ki=21nM
    PDBbind: -logKd/Ki=7.68, Ki=21nM
    BindingDB: IC50=22nM, Kd=0.194984nM, Ki=4420nM, EC50=13.3nM
    13339 3eio:A (2.0) BS01 AJH 3.4.14.5 GO:0001618 ... P27487 18996694 MOAD: ic50=223nM
    PDBbind: -logKd/Ki=6.65, IC50=223nM
    BindingDB: IC50=223nM
    13340 3eio:B (2.0) BS01 AJH 3.4.14.5 GO:0001618 ... P27487 18996694 MOAD: ic50=223nM
    BindingDB: IC50=223nM
    13341 3ej1:A (3.22) BS01 5BP 2.7.11.22 GO:0000082 ... P24941 18835709 PDBbind: -logKd/Ki=6.92, IC50=0.12uM
    BindingDB: IC50=120nM
    13342 3ej1:C (3.22) BS01 5BP 2.7.11.22 GO:0000082 ... P24941 18835709 BindingDB: IC50=120nM
    13343 3ej5:X (2.5) BS01 EJ5 3.2.2.22 GO:0017148 ... P02879 19138659 MOAD: ic50=0.27mM
    PDBbind: -logKd/Ki=3.57, IC50=0.27mM
    13344 3ejl:C (3.2) BS01 UFP 2.1.1.45 GO:0000900 ... P04818 20151707 BindingDB: Ki=14nM
    13345 3ejl:D (3.2) BS01 UFP 2.1.1.45 GO:0000900 ... P04818 20151707 BindingDB: Ki=14nM
    13346 3ejp:A (1.32) BS02 HN2 3.2.1.114 GO:0000139 ... Q24451 20209559 MOAD: Ki=2.8nM
    PDBbind: -logKd/Ki=8.55, Ki=2.8nM
    13347 3ejq:A (1.45) BS02 HN3 3.2.1.114 GO:0000139 ... Q24451 20209559 MOAD: Ki=2.7nM
    PDBbind: -logKd/Ki=8.57, Ki=2.7nM
    13348 3ejr:A (1.27) BS02 HN4 3.2.1.114 GO:0000139 ... Q24451 20209559 MOAD: Ki=2.7nM
    PDBbind: -logKd/Ki=8.57, Ki=2.7nM
    13349 3ejs:A (1.35) BS02 HN5 3.2.1.114 GO:0000139 ... Q24451 20209559 MOAD: ic50=250nM
    PDBbind: -logKd/Ki=6.60, IC50=250nM
    13350 3ejt:A (1.35) BS02 HN6 3.2.1.114 GO:0000139 ... Q24451 20209559 MOAD: ic50=44nM
    PDBbind: -logKd/Ki=7.36, IC50=44nM
    13351 3eju:A (1.32) BS02 HN7 3.2.1.114 GO:0000139 ... Q24451 20209559 MOAD: ic50=250nM
    PDBbind: -logKd/Ki=6.60, IC50=250nM
    13352 3ekk:A (2.1) BS01 GS2 2.7.10.1 GO:0004672 ... P06213 19056263 MOAD: ic50=2nM
    13353 3ekn:A (2.2) BS01 GS3 2.7.10.1 GO:0004672 ... P06213 19071018 MOAD: ic50=2nM
    PDBbind: -logKd/Ki=8.40, IC50=4nM
    13354 3eko:A (1.55) BS01 PYU 3.6.4.10 GO:0005524 ... P07900 18929486 MOAD: Ki=0.2uM
    PDBbind: -logKd/Ki=6.70, Ki=0.2uM
    13355 3eko:B (1.55) BS01 PYU 3.6.4.10 GO:0005524 ... P07900 18929486 MOAD: Ki=0.2uM
    13356 3ekp:A (2.15) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22712830 PDBbind: -logKd/Ki=8.89, Kd=1.3nM
    13357 3ekp:B (2.15) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22712830 MOAD: Kd=1.3nM
    PDBbind: -logKd/Ki=8.89, Kd=1.3nM
    13358 3ekp:C (2.15) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22712830 MOAD: Kd=1.3nM
    13359 3ekq:A (2.2) BS01 ROC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22712830 MOAD: Kd=176nM
    PDBbind: -logKd/Ki=6.75, Kd=176.0nM
    13360 3ekq:B (2.2) BS01 ROC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22712830 PDBbind: -logKd/Ki=6.75, Kd=176.0nM
    13361 3ekr:A (2.0) BS01 PY9 3.6.4.10 GO:0005524 ... P07900 18929486 MOAD: Ki=0.03uM
    PDBbind: -logKd/Ki=7.52, Ki=0.03uM
    13362 3ekr:B (2.0) BS01 PY9 3.6.4.10 GO:0005524 ... P07900 18929486 MOAD: Ki=0.03uM
    13363 3eks:A (1.8) BS03 CY9 3.6.4.- GO:0000281 ... P10987 18938176 PDBbind: -logKd/Ki=5.70, Kd=2uM
    13364 3ekt:A (1.97) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22712830 PDBbind: -logKd/Ki=10.59, Kd=26pM
    13365 3ekt:B (1.97) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22712830 MOAD: Kd=0.026nM
    PDBbind: -logKd/Ki=10.59, Kd=26pM
    13366 3ekt:D (1.97) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22712830 MOAD: Kd=0.026nM
    13367 3ekv:A (1.75) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22712830 MOAD: Kd=0.39nM
    PDBbind: -logKd/Ki=9.41, Kd=0.39nM
    13368 3ekv:B (1.75) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22712830 PDBbind: -logKd/Ki=9.41, Kd=0.39nM
    13369 3ekw:A (1.6) BS01 DR7 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22712830 PDBbind: -logKd/Ki=7.96, Kd=10.9nM
    13370 3ekw:B (1.6) BS01 DR7 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22712830 MOAD: Kd=10.9nM
    PDBbind: -logKd/Ki=7.96, Kd=10.9nM
    13371 3ekx:A (1.97) BS01 1UN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22712830 PDBbind: -logKd/Ki=9.41, Kd=0.39nM
    13372 3ekx:B (1.97) BS01 1UN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22712830 MOAD: Kd=0.39nM
    PDBbind: -logKd/Ki=9.41, Kd=0.39nM
    13373 3eky:A (1.8) BS01 DR7 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22712830 MOAD: Kd=0.23nM
    PDBbind: -logKd/Ki=9.64, Kd=0.23nM
    13374 3eky:B (1.8) BS01 DR7 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22712830 PDBbind: -logKd/Ki=9.64, Kd=0.23nM
    13375 3el0:A (2.0) BS01 1UN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22712830 MOAD: Kd=34.1nM
    PDBbind: -logKd/Ki=7.47, Kd=34.1nM
    13376 3el0:B (2.0) BS01 1UN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22712830 PDBbind: -logKd/Ki=7.47, Kd=34.1nM
    13377 3el1:A (1.7) BS01 DR7 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22712830 MOAD: Kd=0.23nM
    PDBbind: -logKd/Ki=9.64, Kd=0.23nM
    13378 3el1:B (1.7) BS01 DR7 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22712830 PDBbind: -logKd/Ki=9.64, Kd=0.23nM
    13379 3el4:A (2.0) BS01 ROC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22712830 MOAD: Kd=67.4nM
    PDBbind: -logKd/Ki=7.17, Kd=67.4nM
    13380 3el4:B (2.0) BS01 ROC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22712830 PDBbind: -logKd/Ki=7.17, Kd=67.4nM
    13381 3el5:A (1.6) BS01 1UN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22712830 PDBbind: -logKd/Ki=7.72, Kd=18.9nM
    13382 3el5:B (1.6) BS01 1UN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22712830 MOAD: Kd=18.9nM
    PDBbind: -logKd/Ki=7.72, Kd=18.9nM
    13383 3el7:A (2.8) BS01 PD3 2.7.10.2 GO:0004672 ... P00523 18940662 PDBbind: -logKd/Ki=6.32, IC50=0.48uM
    13384 3el8:A (2.3) BS01 PD5 2.7.10.2 GO:0004672 ... P00523 18940662 MOAD: ic50=25nM
    PDBbind: -logKd/Ki=7.60, IC50=25nM
    13385 3el9:A (1.6) BS01 DR7 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22712830 MOAD: Kd=4nM
    PDBbind: -logKd/Ki=8.40, Kd=4.00nM
    13386 3el9:B (1.6) BS01 DR7 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22712830 PDBbind: -logKd/Ki=8.40, Kd=4.00nM
    13387 3elc:A (2.5) BS02 F01 4.6.1.12 GO:0005515 ... P62617 19320487 MOAD: Kd=2.02mM
    PDBbind: -logKd/Ki=2.69, Kd=2.02mM
    BindingDB: Kd=2020000nM
    13388 3elc:A (2.5) BS03 F01 4.6.1.12 GO:0005515 ... P62617 19320487 MOAD: Kd=2.02mM
    PDBbind: -logKd/Ki=2.69, Kd=2.02mM
    BindingDB: Kd=2020000nM
    13389 3elc:B (2.5) BS02 F01 4.6.1.12 GO:0005515 ... P62617 19320487 MOAD: Kd=2.02mM
    BindingDB: Kd=2020000nM
    13390 3elc:C (2.5) BS02 F01 4.6.1.12 GO:0005515 ... P62617 19320487 MOAD: Kd=2.02mM
    PDBbind: -logKd/Ki=2.69, Kd=2.02mM
    BindingDB: Kd=2020000nM
    13391 3elj:A (1.8) BS01 GS7 2.7.11.24 GO:0004672 ... P45983 19071018 PDBbind: -logKd/Ki=5.30, IC50=5uM
    13392 3elm:A (1.9) BS07 24F 3.4.24.- GO:0004222 ... P45452 19422229 MOAD: Ki=0.19nM
    PDBbind: -logKd/Ki=9.72, Ki=0.19nM
    BindingDB: IC50=0.5nM, Ki=0.19nM
    13393 3elm:B (1.9) BS06 24F 3.4.24.- GO:0004222 ... P45452 19422229 MOAD: Ki=0.19nM
    PDBbind: -logKd/Ki=9.72, Ki=0.19nM
    BindingDB: IC50=0.5nM, Ki=0.19nM
    13394 3emg:A (2.6) BS01 685 2.7.10.2 GO:0004672 ... P43405 18938080 PDBbind: -logKd/Ki=8.05, Ki=9nM
    BindingDB: IC50=6.0nM, Ki=9nM
    13395 3eml:A (2.6) BS01 ZMA ?
    3.2.1.17    		 GO:0003796 ... P00720
    P29274    		 18832607 PDBbind: -logKd/Ki=8.74, Kd=1.8nM
    13396 3en3:A (2.43) BS01 KAI ? GO:0015276 ... P19493 19102704 BindingDB: EC50=47000nM, Ki=3570nM
    13397 3en6:B (2.39) BS01 KS5 2.7.10.2 GO:0004672 ... P00523 18849971 MOAD: ic50=0.235uM
    13398 3ene:A (2.4) BS01 NPZ 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 GO:0016301 ... P48736 18849971 MOAD: Ki=0.57uM
    13399 3ens:B (2.3) BS01 ENS 3.4.21.6 GO:0004252 ... P00742 18998662 MOAD: ic50=8.9nM
    PDBbind: -logKd/Ki=8.05, IC50=8.9nM
    13400 3ens:D (2.3) BS01 ENS 3.4.21.6 GO:0004252 ... P00742 18998662 MOAD: ic50=8.9nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218