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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 48291 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    12801 3cxc:1 (3.0) BS01 rna ? GO:0003735 ... P22452 18947996 PDBbind: IC50=4.6uM
    12802 3cxc:2 (3.0) BS01 rna ? GO:0000049 ... P32411 18947996 PDBbind: IC50=4.6uM
    12803 3cxc:A (3.0) BS01 rna ? GO:0002181 ... P20276 18947996 PDBbind: IC50=4.6uM
    12804 3cxc:B (3.0) BS01 rna ? GO:0003723 ... P20279 18947996 PDBbind: IC50=4.6uM
    12805 3cxc:C (3.0) BS01 rna ? GO:0003723 ... P12735 18947996 PDBbind: IC50=4.6uM
    12806 3cxc:D (3.0) BS01 rna ? GO:0000049 ... P14124 18947996 PDBbind: IC50=4.6uM
    12807 3cxc:D (3.0) BS02 rna ? GO:0000049 ... P14124 18947996 PDBbind: IC50=4.6uM
    12808 3cxc:E (3.0) BS01 rna ? GO:0002181 ... P14135 18947996 PDBbind: IC50=4.6uM
    12809 3cxc:F (3.0) BS01 rna ? GO:0001682 ... P12743 18947996 PDBbind: IC50=4.6uM
    12810 3cxc:H (3.0) BS01 rna N/A GO:0003735 ... N/A 18947996 PDBbind: IC50=4.6uM
    12811 3cxc:I (3.0) BS01 rna ? GO:0003729 ... P29198 18947996 PDBbind: IC50=4.6uM
    12812 3cxc:J (3.0) BS01 rna ? GO:0003735 ... P22450 18947996 PDBbind: IC50=4.6uM
    12813 3cxc:K (3.0) BS01 rna ? GO:0003735 ... P12737 18947996 PDBbind: IC50=4.6uM
    12814 3cxc:L (3.0) BS01 rna N/A GO:0003735 ... N/A 18947996 PDBbind: IC50=4.6uM
    12815 3cxc:M (3.0) BS01 rna ? GO:0000027 ... P14123 18947996 PDBbind: IC50=4.6uM
    12816 3cxc:M (3.0) BS02 rna ? GO:0000027 ... P14123 18947996 PDBbind: IC50=4.6uM
    12817 3cxc:N (3.0) BS01 rna ? GO:0003723 ... P12733 18947996 PDBbind: IC50=4.6uM
    12818 3cxc:O (3.0) BS01 rna ? GO:0003723 ... P14119 18947996 PDBbind: IC50=4.6uM
    12819 3cxc:P (3.0) BS01 rna ? GO:0003735 ... P12734 18947996 PDBbind: IC50=4.6uM
    12820 3cxc:P (3.0) BS02 rna ? GO:0003735 ... P12734 18947996 PDBbind: IC50=4.6uM
    12821 3cxc:Q (3.0) BS01 rna ? GO:0002181 ... P10970 18947996 PDBbind: IC50=4.6uM
    12822 3cxc:R (3.0) BS01 rna ? GO:0000027 ... P12732 18947996 PDBbind: IC50=4.6uM
    12823 3cxc:S (3.0) BS01 rna ? GO:0002181 ... P10972 18947996 PDBbind: IC50=4.6uM
    12824 3cxc:T (3.0) BS01 rna ? GO:0003735 ... P14116 18947996 PDBbind: IC50=4.6uM
    12825 3cxc:U (3.0) BS01 rna ? GO:0003735 ... P10971 18947996 PDBbind: IC50=4.6uM
    12826 3cxc:V (3.0) BS01 rna ? GO:0000463 ... P14121 18947996 PDBbind: IC50=4.6uM
    12827 3cxc:V (3.0) BS02 rna ? GO:0000463 ... P14121 18947996 PDBbind: IC50=4.6uM
    12828 3cxc:W (3.0) BS01 rna ? GO:0002181 ... P18138 18947996 PDBbind: IC50=4.6uM
    12829 3cxc:X (3.0) BS01 rna ? GO:0000166 ... P12736 18947996 PDBbind: IC50=4.6uM
    12830 3cxc:Y (3.0) BS01 rna N/A GO:0003735 ... N/A 18947996 PDBbind: IC50=4.6uM
    12831 3cxc:Z (3.0) BS01 rna ? GO:0003723 ... P32410 18947996 PDBbind: IC50=4.6uM
    12832 3cy2:A (2.01) BS02 MB9 2.7.11.1 GO:0004672 ... P11309 22136433 MOAD: ic50=60nM
    PDBbind: -logKd/Ki=7.22, IC50=60nM
    12833 3cy3:A (2.15) BS02 JN5 2.7.11.1 GO:0004672 ... P11309 N/A BindingDB: IC50=80nM
    12834 3cyu:A (1.7) BS02 0CR 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 18461940 MOAD: Kd=60nM
    PDBbind: -logKd/Ki=7.22, Kd=60nM
    12835 3cyu:A (1.7) BS03 1CR 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 18461940 MOAD: Kd=60nM
    12836 3cyw:A (1.4) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18597780 MOAD: Ki=17nM
    PDBbind: -logKd/Ki=7.77, Ki=17nM
    12837 3cyw:B (1.4) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18597780 PDBbind: -logKd/Ki=7.77, Ki=17nM
    12838 3cyx:A (1.2) BS01 ROC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18597780 MOAD: Ki=10nM
    PDBbind: -logKd/Ki=8.00, Ki=10nM
    12839 3cyx:B (1.2) BS01 ROC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18597780 PDBbind: -logKd/Ki=8.00, Ki=10nM
    12840 3cyz:A (1.8) BS01 9OD ? GO:0005549 ... Q9U9J6 19481550 MOAD: Kd=60nM
    PDBbind: -logKd/Ki=7.22, Kd=60.0nM
    12841 3cyz:B (1.8) BS01 9OD ? GO:0005549 ... Q9U9J6 19481550 MOAD: Kd=60nM
    PDBbind: -logKd/Ki=7.22, Kd=60.0nM
    12842 3cyz:B (1.8) BS02 9OD ? GO:0005549 ... Q9U9J6 19481550 MOAD: Kd=60nM
    PDBbind: -logKd/Ki=7.22, Kd=60.0nM
    12843 3cz0:A (1.7) BS01 9OD ? GO:0005549 ... Q9U9J6 19481550 MOAD: Kd=60nM
    12844 3cz0:B (1.7) BS01 9OD ? GO:0005549 ... Q9U9J6 19481550 MOAD: Kd=60nM
    12845 3cz0:B (1.7) BS02 9OD ? GO:0005549 ... Q9U9J6 19481550 MOAD: Kd=60nM
    12846 3cz1:A (1.5) BS01 NBB ? GO:0005549 ... Q9U9J6 19481550 MOAD: Kd=55nM
    PDBbind: -logKd/Ki=7.26, Kd=55.0nM
    12847 3cz1:B (1.5) BS01 NBB ? GO:0005549 ... Q9U9J6 19481550 MOAD: Kd=55nM
    PDBbind: -logKd/Ki=7.26, Kd=55.0nM
    12848 3cz1:B (1.5) BS02 NBB ? GO:0005549 ... Q9U9J6 19481550 MOAD: Kd=55nM
    PDBbind: -logKd/Ki=7.26, Kd=55.0nM
    12849 3czr:A (2.35) BS02 3CZ 1.1.1.146
    1.1.1.201    		 GO:0005496 ... P28845 18511278 MOAD: ic50=3nM
    BindingDB: IC50=3nM
    12850 3czv:A (2.0) BS02 AZM 4.2.1.1 GO:0004089 ... Q8N1Q1 18618712 MOAD: Ki=16nM
    PDBbind: -logKd/Ki=7.80, Ki=16nM
    BindingDB: Ki=17nM, Kd=50nM
    12851 3czv:B (2.0) BS02 AZM 4.2.1.1 GO:0004089 ... Q8N1Q1 18618712 MOAD: Ki=16nM
    BindingDB: Ki=17nM, Kd=50nM
    12852 3d04:A (2.4) BS01 SAK 4.2.1.59 GO:0005737 ... Q5G940 18780820 MOAD: Ki=0.9uM
    PDBbind: -logKd/Ki=6.05, Ki=0.9uM
    12853 3d04:B (2.4) BS01 SAK 4.2.1.59 GO:0005737 ... Q5G940 18780820 PDBbind: -logKd/Ki=6.05, Ki=0.9uM
    12854 3d04:C (2.4) BS01 SAK 4.2.1.59 GO:0005737 ... Q5G940 18780820 MOAD: Ki=0.9uM
    12855 3d0b:A (1.74) BS01 SNX 3.6.4.10 GO:0005524 ... P07900 18511277 MOAD: Kd=0.29uM
    PDBbind: -logKd/Ki=6.54, Kd=0.29uM
    12856 3d0e:A (2.0) BS01 G93 2.7.11.1 GO:0004672 ... P31751 18800763 MOAD: ic50=13nM
    PDBbind: -logKd/Ki=8.40, Ki=4nM
    BindingDB: IC50=13nM, Kd=2.1nM, Ki=4nM
    12857 3d0e:B (2.0) BS01 G93 2.7.11.1 GO:0004672 ... P31751 18800763 MOAD: ic50=13nM
    BindingDB: IC50=13nM, Kd=2.1nM, Ki=4nM
    12858 3d14:A (1.9) BS01 AK1 2.7.11.1 GO:0004672 ... P97477 18678489 MOAD: ic50=22nM
    PDBbind: -logKd/Ki=7.66, IC50=22nM
    BindingDB: IC50=22nM
    12859 3d15:A (2.3) BS01 AK2 2.7.11.1 GO:0004672 ... P97477 18678489 BindingDB: IC50=9nM
    12860 3d1g:A (1.64) BS01 322 2.7.7.7 GO:0003677 ... P0A988 18678908 MOAD: Ki~10uM
    PDBbind: -logKd/Ki=5.00, Ki=10uM
    12861 3d1g:B (1.64) BS01 322 2.7.7.7 GO:0003677 ... P0A988 18678908 MOAD: Ki~10uM
    12862 3d1v:A (2.7) BS01 D1V 2.4.2.1 GO:0000255 ... P00491 18790691 PDBbind: -logKd/Ki=3.49, Kd=0.324mM
    12863 3d1x:A (1.05) BS01 ROC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18597780 MOAD: Ki=2.2nM
    PDBbind: -logKd/Ki=8.66, Ki=2.2nM
    12864 3d1x:B (1.05) BS01 ROC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18597780 PDBbind: -logKd/Ki=8.66, Ki=2.2nM
    12865 3d1y:A (1.05) BS01 ROC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18597780 MOAD: Ki=6nM
    PDBbind: -logKd/Ki=8.22, Ki=6nM
    12866 3d1y:B (1.05) BS01 ROC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18597780 PDBbind: -logKd/Ki=8.22, Ki=6nM
    12867 3d1z:A (1.3) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18597780 PDBbind: -logKd/Ki=8.80, Ki=1.6nM
    12868 3d1z:B (1.3) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18597780 MOAD: Ki=1.6nM
    PDBbind: -logKd/Ki=8.80, Ki=1.6nM
    12869 3d20:A (1.05) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18597780 MOAD: Ki=5nM
    PDBbind: -logKd/Ki=8.30, Ki=5nM
    12870 3d20:B (1.05) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18597780 PDBbind: -logKd/Ki=8.30, Ki=5nM
    12871 3d27:A (2.2) BS03 W29 3.4.11.18 GO:0004177 ... P0AE18 18785729 MOAD: ic50=55.7uM
    PDBbind: -logKd/Ki=4.25, IC50=55.7uM
    12872 3d28:A (2.3) BS01 B34 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 18554907 MOAD: ic50=1.4uM
    PDBbind: -logKd/Ki=5.85, IC50=1.4uM
    12873 3d28:B (2.3) BS01 B34 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 18554907 MOAD: ic50=1.4uM
    12874 3d2e:A (2.35) BS01 ATP ? GO:0005524 ... P32589 18555782 PDBbind: -logKd/Ki=6.42, Kd=0.38uM
    12875 3d2r:A (2.03) BS01 ADP 2.7.11.2 GO:0004672 ... Q16654 18658136 MOAD: Kd=3.3uM
    PDBbind: -logKd/Ki=5.48, Kd=3.3uM
    12876 3d2r:B (2.03) BS01 ADP 2.7.11.2 GO:0004672 ... Q16654 18658136 MOAD: Kd=3.3uM
    12877 3d2s:A (1.7) BS01 rna ? GO:0046872 ... Q9NR56 19043415 PDBbind: Kd=140nM
    12878 3d2s:B (1.7) BS01 rna ? GO:0046872 ... Q9NR56 19043415 PDBbind: Kd=140nM
    12879 3d2s:C (1.7) BS01 rna ? GO:0046872 ... Q9NR56 19043415 PDBbind: Kd=140nM
    12880 3d2s:D (1.7) BS01 rna ? GO:0046872 ... Q9NR56 19043415 PDBbind: Kd=140nM
    12881 3d2t:A (1.85) BS01 1FL ? GO:0005179 ... P02766 14711308 MOAD: Kd=75nM
    PDBbind: -logKd/Ki=7.12, Kd=75nM
    BindingDB: IC50=12000nM, Kd=407nM, EC50=5600nM
    12882 3d2t:B (1.85) BS01 1FL ? GO:0005179 ... P02766 14711308 MOAD: Kd=75nM
    PDBbind: -logKd/Ki=7.12, Kd=75nM
    BindingDB: IC50=12000nM, Kd=407nM, EC50=5600nM
    12883 3d2w:A (1.65) BS01 dna ? GO:0003676 ... Q921F2 19174564 PDBbind: Kd=137.5nM
    12884 3d3e:A (2.6) BS02 D3E 1.1.1.146
    1.1.1.201    		 GO:0005496 ... P28845 18553955 BindingDB: IC50=1.4nM
    12885 3d3e:B (2.6) BS02 D3E 1.1.1.146
    1.1.1.201    		 GO:0005496 ... P28845 18553955 BindingDB: IC50=1.4nM
    12886 3d3e:C (2.6) BS02 D3E 1.1.1.146
    1.1.1.201    		 GO:0005496 ... P28845 18553955 BindingDB: IC50=1.4nM
    12887 3d3e:D (2.6) BS02 D3E 1.1.1.146
    1.1.1.201    		 GO:0005496 ... P28845 18553955 BindingDB: IC50=1.4nM
    12888 3d3p:A (1.75) BS02 20A 3.1.4.53 GO:0004114 ... Q07343 18539455 MOAD: ic50=3.1nM
    PDBbind: -logKd/Ki=8.50, IC50=3.16nM
    BindingDB: IC50=3.16nM
    12889 3d45:A (3.0) BS01 7MG 3.1.13.4 GO:0003676 ... Q8VDG3 19217398 PDBbind: -logKd/Ki=5.68, Kd=2.1uM
    12890 3d45:B (3.0) BS01 7MG 3.1.13.4 GO:0003676 ... Q8VDG3 19217398 PDBbind: -logKd/Ki=5.68, Kd=2.1uM
    12891 3d4f:A (1.55) BS02 LN1 3.5.2.6 GO:0008800 ... P0AD64 18955486 PDBbind: -logKd/Ki=7.72, Kd=19nM
    12892 3d4l:A (2.0) BS01 605 3.4.14.5 GO:0001618 ... P27487 18524582 MOAD: ic50=32nM
    PDBbind: -logKd/Ki=7.49, IC50=32nM
    BindingDB: IC50=32nM
    12893 3d4l:B (2.0) BS01 605 3.4.14.5 GO:0001618 ... P27487 18524582 MOAD: ic50=32nM
    BindingDB: IC50=32nM
    12894 3d4n:A (2.5) BS02 D4N 1.1.1.146
    1.1.1.201    		 GO:0005496 ... P28845 18553955 BindingDB: IC50=0.83nM, Ki=2.7nM
    12895 3d4n:B (2.5) BS02 D4N 1.1.1.146
    1.1.1.201    		 GO:0005496 ... P28845 18553955 BindingDB: IC50=0.83nM, Ki=2.7nM
    12896 3d4n:C (2.5) BS02 D4N 1.1.1.146
    1.1.1.201    		 GO:0005496 ... P28845 18553955 BindingDB: IC50=0.83nM, Ki=2.7nM
    12897 3d4n:D (2.5) BS02 D4N 1.1.1.146
    1.1.1.201    		 GO:0005496 ... P28845 18553955 BindingDB: IC50=0.83nM, Ki=2.7nM
    12898 3d4q:A (2.8) BS01 SM5 2.7.11.1 GO:0004672 ... P15056 18676143 PDBbind: -logKd/Ki=10.52, IC50=0.03nM
    BindingDB: IC50=0.030000nM
    12899 3d4q:B (2.8) BS01 SM5 2.7.11.1 GO:0004672 ... P15056 18676143 BindingDB: IC50=0.030000nM
    12900 3d4y:A (1.52) BS02 MVL 3.2.1.114 GO:0000139 ... Q24451 18759458 MOAD: Ki=2uM
    PDBbind: -logKd/Ki=5.70, Ki=2uM
    12901 3d4z:A (1.39) BS02 GIM 3.2.1.114 GO:0000139 ... Q24451 18759458 MOAD: Ki=13uM
    PDBbind: -logKd/Ki=4.89, Ki=13uM
    12902 3d50:A (1.79) BS02 OEV 3.2.1.114 GO:0000139 ... Q24451 18759458 MOAD: Ki=17uM
    PDBbind: -logKd/Ki=4.77, Ki=17uM
    12903 3d51:A (1.43) BS02 GOX 3.2.1.114 GO:0000139 ... Q24451 18759458 MOAD: Ki=70uM
    PDBbind: -logKd/Ki=4.15, Ki=70uM
    12904 3d52:A (1.6) BS02 GHR 3.2.1.114 GO:0000139 ... Q24451 18759458 MOAD: Ki=520uM
    PDBbind: -logKd/Ki=3.28, Ki=520uM
    12905 3d57:A (2.2) BS01 4HY ? GO:0003677 ... P10828 18798561 BindingDB: IC50=0.0407nM
    12906 3d57:B (2.2) BS01 4HY ? GO:0003677 ... P10828 18798561 BindingDB: IC50=0.0407nM
    12907 3d5f:A (2.2) BS01 L41 ? GO:0003677 ... Q03181 N/A BindingDB: EC50=39nM, IC50=13nM, Kd=0.430000nM
    12908 3d5f:B (2.2) BS01 L41 ? GO:0003677 ... Q03181 N/A BindingDB: EC50=39nM, IC50=13nM, Kd=0.430000nM
    12909 3d5m:A (2.2) BS01 4MS 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 18554907 MOAD: ic50<0.01uM
    PDBbind: -logKd/Ki=8.00, IC50=0.01uM
    12910 3d5m:B (2.2) BS01 4MS 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 18554907 MOAD: ic50<0.01uM
    12911 3d5q:A (2.55) BS02 T30 1.1.1.146
    1.1.1.201    		 GO:0005496 ... P28845 18789704 BindingDB: IC50=1.6nM
    12912 3d5q:B (2.55) BS02 T30 1.1.1.146
    1.1.1.201    		 GO:0005496 ... P28845 18789704 BindingDB: IC50=1.6nM
    12913 3d5q:C (2.55) BS02 T30 1.1.1.146
    1.1.1.201    		 GO:0005496 ... P28845 18789704 BindingDB: IC50=1.6nM
    12914 3d5q:D (2.55) BS02 T30 1.1.1.146
    1.1.1.201    		 GO:0005496 ... P28845 18789704 BindingDB: IC50=1.6nM
    12915 3d62:A (2.7) BS01 959 2.1.1.-
    2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0C6X7 18611220 PDBbind: -logKd/Ki=6.10, Kd=800nM
    12916 3d67:A (3.4) BS02 GEM 3.4.17.20 GO:0003331 ... Q96IY4 18559974 PDBbind: -logKd/Ki=4.96, Ki=11uM
    12917 3d6d:A (2.4) BS01 LRG ? GO:0003677 ... P37231 19053776 BindingDB: EC50=550nM
    12918 3d6o:A (1.58) BS01 U1S 4.6.1.18 GO:0003676 ... P61823 19173562 MOAD: Ki=77uM
    PDBbind: -logKd/Ki=4.11, Ki=77uM
    12919 3d6p:A (1.6) BS01 U2S 4.6.1.18 GO:0003676 ... P61823 19173562 MOAD: Ki=179uM
    PDBbind: -logKd/Ki=3.75, Ki=179uM
    12920 3d6q:A (1.6) BS01 U3S 4.6.1.18 GO:0003676 ... P61823 19173562 MOAD: Ki=172uM
    PDBbind: -logKd/Ki=3.76, Ki=172uM
    12921 3d6y:A (2.7) BS01 dna ? GO:0003677 ... P39075 18658145 PDBbind: Kd=10.3uM
    12922 3d6z:A (2.6) BS01 dna ? GO:0003677 ... P39075 18658145 PDBbind: Kd=0.96uM
    12923 3d76:A (1.9) BS01 NBB ? GO:0005549 ... Q9U9J6 19481550 MOAD: Kd=23nM
    12924 3d78:A (1.6) BS01 NBB ? GO:0005549 ... Q9U9J6 19481550 MOAD: Kd=23nM
    PDBbind: -logKd/Ki=7.64, Kd=23nM
    12925 3d78:B (1.6) BS01 NBB ? GO:0005549 ... Q9U9J6 19481550 MOAD: Kd=23nM
    12926 3d78:B (1.6) BS02 NBB ? GO:0005549 ... Q9U9J6 19481550 MOAD: Kd=23nM
    12927 3d7b:A (1.6) BS01 U4S 4.6.1.18 GO:0003676 ... P61823 19173562 MOAD: Ki=203uM
    PDBbind: -logKd/Ki=3.69, Ki=203uM
    12928 3d7d:A (1.69) BS04 FBD 3.4.17.21 GO:0004180 ... Q04609 19053759 MOAD: ic50=14nM
    PDBbind: -logKd/Ki=7.85, IC50=14nM
    BindingDB: Ki=50.0nM
    12929 3d7f:A (1.54) BS04 YBY 3.4.17.21 GO:0004180 ... Q04609 19053759 MOAD: ic50=0.5nM
    PDBbind: -logKd/Ki=9.30, IC50=0.5nM
    BindingDB: Kd=143nM
    12930 3d7g:A (1.75) BS04 MUD 3.4.17.21 GO:0004180 ... Q04609 19053759 MOAD: ic50=17nM
    PDBbind: -logKd/Ki=7.77, IC50=17nM
    12931 3d7h:A (1.55) BS04 YC2 3.4.17.21 GO:0004180 ... Q04609 19053759 MOAD: ic50=0.06nM
    PDBbind: -logKd/Ki=10.22, IC50=0.06nM
    BindingDB: Ki=0.01nM, IC50=0.021000nM
    12932 3d7k:A (2.49) BS02 D7K 4.1.2.38 GO:0000287 ... Q9F4L3 18570438 PDBbind: -logKd/Ki=4.60, Kd=25uM
    12933 3d7k:A (2.49) BS03 D7K 4.1.2.38 GO:0000287 ... Q9F4L3 18570438 PDBbind: -logKd/Ki=4.60, Kd=25uM
    12934 3d7k:B (2.49) BS01 D7K 4.1.2.38 GO:0000287 ... Q9F4L3 18570438 PDBbind: -logKd/Ki=4.60, Kd=25uM
    12935 3d7k:B (2.49) BS03 D7K 4.1.2.38 GO:0000287 ... Q9F4L3 18570438 PDBbind: -logKd/Ki=4.60, Kd=25uM
    12936 3d7m:A (2.9) BS03 GDP ? GO:0000287 ... P10824 19222191 PDBbind: -logKd/Ki=6.44, Kd=0.36uM
    12937 3d7z:A (2.1) BS01 GK5 2.7.11.24 GO:0000077 ... Q16539 18614366 MOAD: Ki=12nM
    PDBbind: -logKd/Ki=7.92, Ki=12nM
    BindingDB: Ki=12nM, IC50=75nM
    12938 3d83:A (1.9) BS01 GK6 2.7.11.24 GO:0000077 ... Q16539 18602262 MOAD: Ki=4.4nM
    PDBbind: -logKd/Ki=8.36, Ki=4.4nM
    BindingDB: IC50=6.0nM, Ki=4.4nM
    12939 3d8w:A (1.7) BS02 D8W 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 19170619 MOAD: Ki=7nM
    PDBbind: -logKd/Ki=8.15, Ki=7.0nM
    12940 3d8y:A (1.72) BS01 T3S 4.6.1.18 GO:0003676 ... P61823 19173562 MOAD: Ki=396uM
    PDBbind: -logKd/Ki=3.40, Ki=396uM
    BindingDB: Ki=396000nM
    12941 3d8z:A (1.98) BS01 TXS 4.6.1.18 GO:0003676 ... P61823 19173562 MOAD: Ki=423uM
    PDBbind: -logKd/Ki=3.37, Ki=423uM
    12942 3d91:A (2.2) BS01 REM 3.4.23.15 GO:0004190 ... P00797 N/A MOAD: Kd=131pM
    PDBbind: -logKd/Ki=9.15, Ki=0.7nM
    BindingDB: IC50=1nM, Ki=0.7nM, Kd=131nM
    12943 3d91:B (2.2) BS01 REM 3.4.23.15 GO:0004190 ... P00797 N/A MOAD: Kd=131pM
    BindingDB: IC50=1nM, Ki=0.7nM, Kd=131nM
    12944 3d94:A (2.3) BS02 D94 2.7.10.1 GO:0004672 ... P08069 18566589 MOAD: Ki=157nM
    PDBbind: -logKd/Ki=6.80, Ki=157nM
    BindingDB: IC50=19nM
    12945 3d9f:A (2.2) BS02 N6C 1.7.3.1 GO:0000166 ... Q8X1D8 19265437 MOAD: Ki=130mM
    12946 3d9f:B (2.2) BS03 N6C 1.7.3.1 GO:0000166 ... Q8X1D8 19265437 MOAD: Ki=130mM
    12947 3d9f:C (2.2) BS02 N6C 1.7.3.1 GO:0000166 ... Q8X1D8 19265437 MOAD: Ki=130mM
    12948 3d9f:D (2.2) BS03 N6C 1.7.3.1 GO:0000166 ... Q8X1D8 19265437 MOAD: Ki=130mM
    12949 3d9v:A (3.3) BS01 H52 2.7.11.1 GO:0004672 ... Q13464 16249185 PDBbind: -logKd/Ki=8.22, Ki=6nM
    BindingDB: Ki=6nM, IC50=30nM
    12950 3d9v:B (3.3) BS01 H52 2.7.11.1 GO:0004672 ... Q13464 16249185 BindingDB: Ki=6nM, IC50=30nM
    12951 3d9z:A (1.65) BS02 D9Z 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 19170619 MOAD: Ki=2nM
    PDBbind: -logKd/Ki=8.70, Ki=2.0nM
    BindingDB: Ki=12nM
    12952 3da6:A (2.0) BS01 BZ9 2.7.11.24 GO:0004672 ... P53779 19062275 PDBbind: -logKd/Ki=8.70, IC50=2nM
    12953 3da9:B (1.8) BS03 44U 3.4.21.5 GO:0004252 ... P00734 19371038 MOAD: Kd=3.1uM
    PDBbind: -logKd/Ki=5.51, Kd=3.1uM
    BindingDB: Kd=3100nM, IC50=18000nM
    12954 3daj:A (2.0) BS01 FXG 2.7.11.1 GO:0004672 ... P97477 18579375 MOAD: ic50=2.9uM
    PDBbind: -logKd/Ki=5.54, IC50=2.9uM
    12955 3dat:A (2.3) BS01 MTX 1.5.1.3 GO:0000166 ... Q81R22 19374017 BindingDB: IC50=15nM
    12956 3dau:A (1.5) BS01 MTX 1.5.1.3 GO:0004146 ... P0ABQ4 19374017 BindingDB: IC50=8.8nM, EC50=1nM
    12957 3daz:A (1.6) BS02 MZM 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 19170619 MOAD: Ki=11.8nM
    PDBbind: -logKd/Ki=7.93, Ki=11.8nM
    BindingDB: Ki=14nM, IC50=21nM, EC50=4e+1nM
    12958 3db6:A (2.85) BS01 FRS 2.7.11.21 GO:0004672 ... Q4KMI8 18678933 PDBbind: -logKd/Ki=6.14, IC50=0.73uM
    12959 3db8:A (3.15) BS01 1FR 2.7.11.21 GO:0004672 ... Q4KMI8 18790636 PDBbind: -logKd/Ki=7.00, IC50=99nM
    12960 3dba:A (2.57) BS01 35G 3.1.4.35 N/A P52731 18614542 PDBbind: -logKd/Ki=8.00, Kd=10nM
    12961 3dba:B (2.57) BS01 35G 3.1.4.35 N/A P52731 18614542 PDBbind: -logKd/Ki=8.00, Kd=10nM
    12962 3dbd:A (3.05) BS01 3FR 2.7.11.21 GO:0004672 ... Q4KMI8 18793847 PDBbind: -logKd/Ki=7.38, IC50=42nM
    12963 3dbs:A (2.8) BS01 GD9 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 GO:0016301 ... P48736 18754654 PDBbind: -logKd/Ki=7.12, IC50=75nM
    BindingDB: IC50=13nM, Ki=41.8nM, Kd=48nM
    12964 3dbu:A (1.7) BS02 D8W 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 19170619 MOAD: Ki=8.8nM
    PDBbind: -logKd/Ki=8.06, Ki=8.8nM
    12965 3dc3:A (1.7) BS02 AZM 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 19170619 MOAD: Ki=4.9nM
    PDBbind: -logKd/Ki=8.31, Ki=4.9nM
    BindingDB: Ki=12nM, Kd=17nM, IC50=10nM
    12966 3dcc:A (1.6) BS02 D9Z 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 19170619 MOAD: Ki=1.1nM
    PDBbind: -logKd/Ki=8.96, Ki=1.1nM
    BindingDB: Ki=12nM
    12967 3dcq:A (1.8) BS03 2G0 ? GO:0030246 ... Q9HYN5 19101469 MOAD: ic50=5.94uM
    PDBbind: -logKd/Ki=5.23, IC50=5.94uM
    12968 3dcq:B (1.8) BS03 2G0 ? GO:0030246 ... Q9HYN5 19101469 MOAD: ic50=5.94uM
    PDBbind: -logKd/Ki=5.23, IC50=5.94uM
    12969 3dcq:C (1.8) BS03 2G0 ? GO:0030246 ... Q9HYN5 19101469 MOAD: ic50=5.94uM
    12970 3dcq:D (1.8) BS03 2G0 ? GO:0030246 ... Q9HYN5 19101469 MOAD: ic50=5.94uM
    12971 3dcr:A (1.4) BS01 KVS 3.4.23.16 GO:0004190 ... O38732 18657969 PDBbind: -logKd/Ki=8.20, IC50=6.3nM
    12972 3dcr:B (1.4) BS01 KVS 3.4.23.16 GO:0004190 ... O38732 18657969 MOAD: ic50=6.3nM
    PDBbind: -logKd/Ki=8.20, IC50=6.3nM
    12973 3dcs:A (1.8) BS02 MZM 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 19170619 MOAD: Ki=11.4nM
    PDBbind: -logKd/Ki=7.94, Ki=11.4nM
    BindingDB: Ki=14nM, IC50=21nM, EC50=4e+1nM
    12974 3dct:A (2.5) BS02 064 ? GO:0004879 ... Q96RI1 18621523 PDBbind: -logKd/Ki=6.95, IC50=0.112uM
    BindingDB: EC50=65nM, IC50=20nM
    12975 3dcu:A (2.95) BS02 O62 ? GO:0004879 ... Q96RI1 18621523 BindingDB: EC50=68nM
    12976 3dcv:A (2.7) BS01 55E 2.7.11.1 GO:0004672 ... P11309 18672368 PDBbind: -logKd/Ki=8.52, IC50=3nM
    12977 3dcw:A (1.5) BS02 EZL 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 19170619 MOAD: Ki<1nM
    PDBbind: -logKd/Ki=9.00, Ki=1nM
    BindingDB: Ki=8nM, IC50=3nM, Kd=0.71nM
    12978 3dd0:A (1.48) BS02 EZL 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 19170619 MOAD: Ki<1nM
    PDBbind: -logKd/Ki=9.00, Ki=1nM
    BindingDB: Ki=8nM, IC50=3nM, Kd=0.71nM
    12979 3dd1:A (2.57) BS04 25D 2.4.1.1 GO:0000166 ... P06737 19138846 BindingDB: IC50=10nM
    12980 3dd1:A (2.57) BS05 25D 2.4.1.1 GO:0000166 ... P06737 19138846 BindingDB: IC50=10nM
    12981 3dd1:B (2.57) BS01 25D 2.4.1.1 GO:0000166 ... P06737 19138846 BindingDB: IC50=10nM
    12982 3dd1:B (2.57) BS05 25D 2.4.1.1 GO:0000166 ... P06737 19138846 BindingDB: IC50=10nM
    12983 3dd8:A (1.9) BS02 2C7 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 18640037 MOAD: Ki=14nM
    PDBbind: -logKd/Ki=7.85, Ki=14nM
    BindingDB: Ki=14nM
    12984 3ddf:A (1.2) BS02 GB6 3.2.1.114 GO:0000139 ... Q24451 18599296 MOAD: Ki=67uM
    PDBbind: -logKd/Ki=4.66, Ki=22uM
    12985 3ddg:A (1.74) BS02 GB7 3.2.1.114 GO:0000139 ... Q24451 18599296 MOAD: Ki=1uM
    PDBbind: -logKd/Ki=6.00, Ki=1uM
    12986 3ddp:A (2.7) BS01 RC8 2.7.11.22 GO:0000082 ... P24941 18574471 BindingDB: IC50=62nM
    12987 3ddp:C (2.7) BS01 RC8 2.7.11.22 GO:0000082 ... P24941 18574471 PDBbind: -logKd/Ki=7.14, IC50=0.072uM
    BindingDB: IC50=62nM
    12988 3ddq:A (1.8) BS01 RRC 2.7.11.22 GO:0000082 ... P24941 18574471 MOAD: ic50=0.21uM
    BindingDB: IC50=700nM, Kd=3400nM, Ki=250nM
    12989 3ddq:C (1.8) BS01 RRC 2.7.11.22 GO:0000082 ... P24941 18574471 MOAD: ic50=0.21uM
    PDBbind: -logKd/Ki=6.68, IC50=0.21uM
    BindingDB: IC50=700nM, Kd=3400nM, Ki=250nM
    12990 3dds:A (1.8) BS04 26B 2.4.1.1 GO:0000166 ... P06737 19138846 MOAD: ic50=506nM
    BindingDB: IC50=7nM
    12991 3dds:A (1.8) BS05 26B 2.4.1.1 GO:0000166 ... P06737 19138846 MOAD: ic50=506nM
    BindingDB: IC50=7nM
    12992 3dds:B (1.8) BS01 26B 2.4.1.1 GO:0000166 ... P06737 19138846 MOAD: ic50=506nM
    BindingDB: IC50=7nM
    12993 3dds:B (1.8) BS05 26B 2.4.1.1 GO:0000166 ... P06737 19138846 MOAD: ic50=506nM
    BindingDB: IC50=7nM
    12994 3dds:B (1.8) BS06 26B 2.4.1.1 GO:0000166 ... P06737 19138846 MOAD: ic50=506nM
    BindingDB: IC50=7nM
    12995 3ddu:A (1.56) BS01 552 3.4.21.26 GO:0004252 ... P48147 18606544 MOAD: ic50=40nM
    PDBbind: -logKd/Ki=7.40, IC50=40nM
    12996 3ddw:A (1.9) BS04 055 2.4.1.1 GO:0000166 ... P06737 19138846 MOAD: ic50=1067nM
    12997 3ddw:A (1.9) BS05 055 2.4.1.1 GO:0000166 ... P06737 19138846 MOAD: ic50=1067nM
    12998 3ddw:B (1.9) BS01 055 2.4.1.1 GO:0000166 ... P06737 19138846 MOAD: ic50=1067nM
    12999 3ddw:B (1.9) BS05 055 2.4.1.1 GO:0000166 ... P06737 19138846 MOAD: ic50=1067nM
    13000 3deh:C (2.5) BS01 RXA 3.4.22.56 GO:0001554 ... P42574 18768468 MOAD: ic50=149nM
    PDBbind: -logKd/Ki=6.83, IC50=149nM
    BindingDB: IC50=149nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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