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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 48291 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    12001 3bbb:C (1.3) BS02 DG 2.7.13.3
    2.7.4.6    		 GO:0001726 ... P22392 19435876 PDBbind: -logKd/Ki=7.00, Kd=100nM
    12002 3bbf:A (1.7) BS01 GDP 2.7.13.3
    2.7.4.6    		 GO:0001726 ... P22392 19435876 PDBbind: -logKd/Ki=5.28, Kd=5.2uM
    12003 3bbf:B (1.7) BS01 GDP 2.7.13.3
    2.7.4.6    		 GO:0001726 ... P22392 19435876 PDBbind: -logKd/Ki=5.28, Kd=5.2uM
    12004 3bbt:B (2.8) BS01 FMM 2.7.10.1 GO:0004672 ... Q15303 18334220 PDBbind: -logKd/Ki=6.15, Ki=700nM
    BindingDB: Kd=54nM, IC50=>1000nM
    12005 3bbt:D (2.8) BS01 FMM 2.7.10.1 GO:0004672 ... Q15303 18334220 BindingDB: Kd=54nM, IC50=>1000nM
    12006 3bc3:A (2.2) BS01 OPT 3.4.22.15 GO:0006508 ... P07711 18278855 MOAD: Ki=0.155uM
    PDBbind: -logKd/Ki=6.81, Ki=0.155uM
    12007 3bc3:B (2.2) BS01 OPT 3.4.22.15 GO:0006508 ... P07711 18278855 MOAD: Ki=0.155uM
    12008 3bc4:A (1.82) BS01 LLG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18720485 MOAD: Ki=4.5uM
    PDBbind: -logKd/Ki=5.35, Ki=4.5uM
    12009 3bc4:A (1.82) BS02 LLG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18720485 MOAD: Ki=4.5uM
    PDBbind: -logKd/Ki=5.35, Ki=4.5uM
    12010 3bc5:A (2.27) BS01 ZAA ? GO:0003677 ... P37231 19201606 MOAD: ic50=0.005uM
    PDBbind: -logKd/Ki=8.30, IC50=5nM
    BindingDB: EC50=4nM, IC50=5nM
    12011 3bcn:A (2.85) BS01 E64 3.4.22.- GO:0004197 ... A5YVK8 18167146 PDBbind: -logKd/Ki=7.12, IC50=76.25nM
    12012 3bcs:A (2.0) BS01 CJB 2.4.1.1 GO:0000166 ... P00489 N/A PDBbind: -logKd/Ki=5.21, Ki=6.1uM
    BindingDB: Ki=6100nM
    12013 3bd7:A (1.9) BS02 CKB 2.4.1.1 GO:0000166 ... P00489 N/A BindingDB: IC50=6600nM
    12014 3bd7:A (1.9) BS03 CKB 2.4.1.1 GO:0000166 ... P00489 N/A BindingDB: IC50=6600nM
    12015 3bd8:A (2.1) BS02 C3B 2.4.1.1 GO:0000166 ... P00489 N/A BindingDB: Ki=7700nM
    12016 3be2:A (1.75) BS01 RAJ 2.7.10.1 GO:0004672 ... P35968 18324761 MOAD: ic50=2nM
    PDBbind: -logKd/Ki=8.70, IC50=2nM
    BindingDB: IC50=2nM
    12017 3be9:A (2.0) BS01 P04 2.7.11.1 GO:0004672 ... P28523 18055206 MOAD: Ki=24nM
    PDBbind: -logKd/Ki=7.62, Ki=24nM
    BindingDB: Ki=24nM
    12018 3bea:A (2.02) BS01 IXH 2.7.10.1 GO:0004672 ... P07333
    Q02763    		 18342505 MOAD: ic50=0.007uM
    PDBbind: -logKd/Ki=8.15, IC50=0.007uM
    12019 3bel:A (2.3) BS01 POX 2.7.10.1 GO:0004672 ... P00533 18508264 MOAD: ic50=0.014uM
    PDBbind: -logKd/Ki=7.85, IC50=0.014uM
    BindingDB: IC50=14nM
    12020 3ben:A (1.65) BS02 LEH 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 18298086 MOAD: Kd=0.32uM
    12021 3ben:B (1.65) BS02 LEH 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 18298086 MOAD: Kd=0.32uM
    12022 3bep:A (1.92) BS01 dna 2.7.7.7 GO:0003677 ... P0A988 18191219 PDBbind: Kd=120nM
    12023 3bep:B (1.92) BS01 dna 2.7.7.7 GO:0003677 ... P0A988 18191219 PDBbind: Kd=120nM
    12024 3bet:A (1.85) BS02 CTF 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 18260615 MOAD: ic50=1.5uM
    PDBbind: -logKd/Ki=5.82, IC50=1.5uM
    BindingDB: IC50=1500nM, Ki=1470nM
    12025 3bex:A (1.51) BS01 PAU 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 MOAD: Kd=2.7uM
    PDBbind: -logKd/Ki=5.57, Kd=2.7uM
    12026 3bex:A (1.51) BS02 PAU 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 MOAD: Kd=2.7uM
    PDBbind: -logKd/Ki=5.57, Kd=2.7uM
    12027 3bex:B (1.51) BS01 PAU 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 MOAD: Kd=2.7uM
    PDBbind: -logKd/Ki=5.57, Kd=2.7uM
    12028 3bex:B (1.51) BS02 PAU 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 MOAD: Kd=2.7uM
    PDBbind: -logKd/Ki=5.57, Kd=2.7uM
    12029 3bex:C (1.51) BS01 PAU 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 MOAD: Kd=2.7uM
    12030 3bex:C (1.51) BS02 PAU 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 MOAD: Kd=2.7uM
    12031 3bex:D (1.51) BS01 PAU 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 MOAD: Kd=2.7uM
    12032 3bex:D (1.51) BS02 PAU 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 MOAD: Kd=2.7uM
    12033 3bex:E (1.51) BS01 PAU 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 MOAD: Kd=2.7uM
    12034 3bex:E (1.51) BS02 PAU 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 MOAD: Kd=2.7uM
    12035 3bex:F (1.51) BS01 PAU 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 MOAD: Kd=2.7uM
    12036 3bex:F (1.51) BS02 PAU 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 MOAD: Kd=2.7uM
    12037 3bf1:A (2.3) BS01 ADP 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 PDBbind: -logKd/Ki=2.52, Kd=3mM
    12038 3bf1:A (2.3) BS02 PAU 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 MOAD: Kd=2.7uM
    12039 3bf1:A (2.3) BS03 PAU 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 MOAD: Kd=2.7uM
    12040 3bf1:A (2.3) BS04 ADP 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 PDBbind: -logKd/Ki=2.52, Kd=3mM
    12041 3bf1:B (2.3) BS01 PAU 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 MOAD: Kd=2.7uM
    12042 3bf1:B (2.3) BS02 ADP 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 PDBbind: -logKd/Ki=2.52, Kd=3mM
    12043 3bf1:B (2.3) BS03 PAU 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 MOAD: Kd=2.7uM
    12044 3bf1:B (2.3) BS04 ADP 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 PDBbind: -logKd/Ki=2.52, Kd=3mM
    12045 3bf1:C (2.3) BS03 PAU 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 MOAD: Kd=2.7uM
    12046 3bf1:C (2.3) BS04 PAU 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 MOAD: Kd=2.7uM
    12047 3bf1:D (2.3) BS01 PAU 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 MOAD: Kd=2.7uM
    12048 3bf1:D (2.3) BS03 PAU 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 MOAD: Kd=2.7uM
    12049 3bf1:E (2.3) BS03 PAU 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 MOAD: Kd=2.7uM
    12050 3bf1:E (2.3) BS04 PAU 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 MOAD: Kd=2.7uM
    12051 3bf1:F (2.3) BS02 PAU 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 MOAD: Kd=2.7uM
    12052 3bf1:F (2.3) BS04 PAU 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 MOAD: Kd=2.7uM
    12053 3bf6:H (2.5) BS03 SVR 3.4.21.5 GO:0004252 ... P00734 19332154 MOAD: ic50=40uM
    12054 3bft:A (2.27) BS01 S2P ? GO:0015276 ... P19491 18269227 MOAD: Ki=323nM
    PDBbind: -logKd/Ki=6.49, Ki=323nM
    12055 3bft:B (2.27) BS01 S2P ? GO:0015276 ... P19491 18269227 MOAD: Ki=323nM
    12056 3bft:C (2.27) BS01 S2P ? GO:0015276 ... P19491 18269227 MOAD: Ki=323nM
    12057 3bfu:A (1.95) BS01 R2P ? GO:0015276 ... P19491 18269227 MOAD: Ki=531nM
    PDBbind: -logKd/Ki=6.27, Ki=531nM
    12058 3bfu:B (1.95) BS01 R2P ? GO:0015276 ... P19491 18269227 MOAD: Ki=531nM
    12059 3bfu:C (1.95) BS01 R2P ? GO:0015276 ... P19491 18269227 MOAD: Ki=531nM
    12060 3bfu:D (1.95) BS01 R2P ? GO:0015276 ... P19491 18269227 MOAD: Ki=531nM
    12061 3bgb:A (1.9) BS01 LJG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18760609 PDBbind: -logKd/Ki=6.05, Ki=0.9uM
    12062 3bgb:B (1.9) BS01 LJG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18760609 MOAD: Ki=0.9uM
    PDBbind: -logKd/Ki=6.05, Ki=0.9uM
    12063 3bgc:A (1.8) BS01 LJH 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18760609 MOAD: Ki=9.6uM
    PDBbind: -logKd/Ki=5.02, Ki=9.6uM
    12064 3bgc:B (1.8) BS01 LJH 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18760609 PDBbind: -logKd/Ki=5.02, Ki=9.6uM
    12065 3bgl:A (2.225) BS01 RID 1.1.1.34 GO:0004420 ... P04035 18155906 MOAD: ic50=4.5nM
    PDBbind: -logKd/Ki=8.35, IC50=4.5nM
    12066 3bgl:A (2.225) BS02 RID 1.1.1.34 GO:0004420 ... P04035 18155906 MOAD: ic50=4.5nM
    PDBbind: -logKd/Ki=8.35, IC50=4.5nM
    12067 3bgl:B (2.225) BS01 RID 1.1.1.34 GO:0004420 ... P04035 18155906 MOAD: ic50=4.5nM
    PDBbind: -logKd/Ki=8.35, IC50=4.5nM
    12068 3bgl:B (2.225) BS02 RID 1.1.1.34 GO:0004420 ... P04035 18155906 MOAD: ic50=4.5nM
    PDBbind: -logKd/Ki=8.35, IC50=4.5nM
    12069 3bgl:C (2.225) BS01 RID 1.1.1.34 GO:0004420 ... P04035 18155906 MOAD: ic50=4.5nM
    12070 3bgl:C (2.225) BS02 RID 1.1.1.34 GO:0004420 ... P04035 18155906 MOAD: ic50=4.5nM
    12071 3bgl:D (2.225) BS01 RID 1.1.1.34 GO:0004420 ... P04035 18155906 MOAD: ic50=4.5nM
    12072 3bgl:D (2.225) BS02 RID 1.1.1.34 GO:0004420 ... P04035 18155906 MOAD: ic50=4.5nM
    12073 3bgp:A (2.8) BS01 VX1 2.7.11.1 GO:0004672 ... P11309 18290603 PDBbind: -logKd/Ki=7.04, Ki=0.091uM
    BindingDB: Ki=91nM
    12074 3bgq:A (2.0) BS01 VX2 2.7.11.1 GO:0004672 ... P11309 18290603 MOAD: Ki=11nM
    PDBbind: -logKd/Ki=7.96, Ki=11nM
    BindingDB: Ki=11nM
    12075 3bgs:A (2.099) BS01 DIH 2.4.2.1 GO:0000255 ... P00491 18154341 MOAD: Ki=380pM
    PDBbind: -logKd/Ki=9.42, Ki=380pM
    12076 3bgz:A (2.4) BS01 VX3 2.7.11.1 GO:0004672 ... P11309 18290603 MOAD: Ki=0.55uM
    PDBbind: -logKd/Ki=6.26, Ki=0.55uM
    BindingDB: IC50=550nM, Ki=550nM
    12077 3bh3:A (2.1) BS01 PNH 4.1.1.4 GO:0016829 ... Q7NSA6 19458715 PDBbind: -logKd/Ki=6.15, Ki=0.7uM
    12078 3bho:A (1.8) BS01 B4P ? GO:0003682 ... O43809 18445629 MOAD: Kd=2.44uM
    12079 3bht:A (2.0) BS01 MFR 2.7.11.22 GO:0000082 ... P24941 17804748 MOAD: ic50=0.011uM
    BindingDB: IC50=11nM
    12080 3bht:C (2.0) BS01 MFR 2.7.11.22 GO:0000082 ... P24941 17804748 MOAD: ic50=0.011uM
    BindingDB: IC50=11nM
    12081 3bhu:A (2.3) BS01 MHR 2.7.11.22 GO:0000082 ... P24941 17804748 MOAD: ic50=0.003uM
    BindingDB: IC50=3nM
    12082 3bhu:C (2.3) BS01 MHR 2.7.11.22 GO:0000082 ... P24941 17804748 MOAD: ic50=0.003uM
    BindingDB: IC50=3nM
    12083 3bhv:A (2.1) BS01 VAR 2.7.11.22 GO:0000082 ... P24941 17804748 MOAD: ic50=0.08uM
    12084 3bhv:C (2.1) BS01 VAR 2.7.11.22 GO:0000082 ... P24941 17804748 MOAD: ic50=0.08uM
    12085 3bhx:A (1.6) BS04 BHX 3.4.17.21 GO:0004180 ... Q04609 18234225 MOAD: ic50=0.7nM
    PDBbind: -logKd/Ki=9.15, IC50=0.7nM
    12086 3bi0:A (1.67) BS04 BIX 3.4.17.21 GO:0004180 ... Q04609 18234225 MOAD: ic50=14nM
    PDBbind: -logKd/Ki=7.85, IC50=14nM
    12087 3bi1:A (1.5) BS04 3BI 3.4.17.21 GO:0004180 ... Q04609 18234225 MOAD: ic50=0.12nM
    PDBbind: -logKd/Ki=9.92, IC50=0.12nM
    12088 3bi6:A (2.2) BS01 396 2.7.10.2 GO:0004672 ... P30291 18191399 MOAD: ic50=15nM
    PDBbind: -logKd/Ki=7.82, IC50=15nM
    BindingDB: IC50=15nM
    12089 3bib:X (2.5) BS01 PSF ? N/A Q6U7R4 18083575 MOAD: ic50=4mM
    12090 3bir:A (1.8) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 9466938 MOAD: Kd=112uM
    12091 3biv:H (1.8) BS03 11U 3.4.21.5 GO:0004252 ... P00734 17902081 BindingDB: Ki=56100nM
    12092 3biz:A (2.2) BS01 61E 2.7.10.2 GO:0004672 ... P30291 18191399 MOAD: ic50=58nM
    PDBbind: -logKd/Ki=7.24, IC50=58nM
    BindingDB: IC50=58nM
    12093 3bjc:A (2.0) BS03 WAN 3.1.4.35 GO:0004112 ... O76074 18346713 MOAD: ic50=0.11uM
    PDBbind: -logKd/Ki=6.96, IC50=0.11uM
    BindingDB: IC50=110nM
    12094 3bki:B (1.87) BS01 FQX ? GO:0015276 ... P19491 18754610 MOAD: ic50=7.6uM
    12095 3bki:C (1.87) BS01 FQX ? GO:0015276 ... P19491 18754610 MOAD: ic50=7.6uM
    12096 3bki:D (1.87) BS01 FQX ? GO:0015276 ... P19491 18754610 MOAD: ic50=7.6uM
    12097 3bki:P (1.87) BS01 FQX ? GO:0015276 ... P19491 18754610 MOAD: ic50=7.6uM
    PDBbind: -logKd/Ki=5.12, IC50=7.6uM
    12098 3bkk:A (2.17) BS03 KAF 3.4.15.1 GO:0006508 ... P12821 18457420 MOAD: Ki=0.83uM
    PDBbind: -logKd/Ki=6.08, Ki=0.83uM
    12099 3bkl:A (2.18) BS03 KAW 3.4.15.1 GO:0006508 ... P12821 18457420 MOAD: Ki=0.679uM
    PDBbind: -logKd/Ki=6.17, Ki=0.679uM
    12100 3bl0:A (1.9) BS02 BL0 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 18162396 MOAD: Ki=121nM
    PDBbind: -logKd/Ki=6.92, Ki=121nM
    12101 3bl1:A (2.1) BS02 BL1 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 18374572 MOAD: Ki=2520nM
    PDBbind: -logKd/Ki=5.60, Ki=2.52uM
    BindingDB: Kd=300nM, Ki=2520nM
    12102 3bl7:A (2.31) BS01 DD1 3.6.1.59 GO:0000290 ... Q96C86 18839960 MOAD: ic50=7.62nM
    PDBbind: -logKd/Ki=8.40, IC50=4nM
    BindingDB: IC50=0.030000nM, EC50=4.0nM
    12103 3bl9:A (1.8) BS01 DD2 3.6.1.59 GO:0000290 ... Q96C86 18839960 MOAD: ic50=43.94nM
    PDBbind: -logKd/Ki=7.18, IC50=66nM
    BindingDB: IC50=43.94nM, EC50=67nM
    12104 3bla:A (2.6) BS01 DD3 3.6.1.59 GO:0000290 ... Q96C86 18839960 PDBbind: -logKd/Ki=8.70, Ki=2nM
    12105 3bla:B (2.6) BS01 DD3 3.6.1.59 GO:0000290 ... Q96C86 18839960 PDBbind: -logKd/Ki=8.70, Ki=2nM
    12106 3blb:A (1.3) BS02 SWA 3.2.1.114 GO:0000139 ... Q24451 N/A BindingDB: IC50=37nM, Ki=3.0nM
    12107 3blr:A (2.8) BS01 CPB 2.7.11.22
    2.7.11.23    		 GO:0004672 ... P50750 18566585 PDBbind: -logKd/Ki=8.19, Kd=6.4nM
    BindingDB: IC50=20nM, Kd=6.4nM, Ki=3.0nM
    12108 3bls:A (2.3) BS01 APB 3.5.2.6 GO:0008800 ... P00811 9819201 PDBbind: -logKd/Ki=5.14, Ki=7.3uM
    BindingDB: Ki=7300nM
    12109 3bls:B (2.3) BS01 APB 3.5.2.6 GO:0008800 ... P00811 9819201 BindingDB: Ki=7300nM
    12110 3blt:A (2.2) BS01 PSY 3.1.3.48 GO:0004725 ... P15273 18528979 PDBbind: -logKd/Ki=3.54, Ki=0.29mM
    12111 3blu:A (2.0) BS01 PVS 3.1.3.48 GO:0004725 ... P15273 18528979 PDBbind: -logKd/Ki=3.46, Ki=0.35mM
    12112 3bm5:B (2.4) BS02 CYS ? GO:0004124 ... O15570 18350570 MOAD: Kd=1.1mM
    12113 3bm6:A (2.1) BS01 C9P 3.5.2.6 GO:0008800 ... P00811 20452208 PDBbind: -logKd/Ki=7.59, Ki=26nM
    12114 3bm8:A (2.7) BS01 PSY 3.1.3.48 GO:0004725 ... P15273 18528979 PDBbind: -logKd/Ki=3.54, Ki=0.29mM
    12115 3bm9:A (1.6) BS01 BXZ 3.6.4.10 GO:0005524 ... P07900 18197612 MOAD: ic50=0.19uM
    PDBbind: -logKd/Ki=6.72, IC50=0.19uM
    BindingDB: IC50=190nM
    12116 3bmn:A (1.98) BS02 AX3 ? GO:0000166 ... O76290 19916554 MOAD: Ki>35uM
    PDBbind: -logKd/Ki=4.46, Ki=35uM
    12117 3bmn:B (1.98) BS02 AX3 ? GO:0000166 ... O76290 19916554 MOAD: Ki>35uM
    12118 3bmn:C (1.98) BS02 AX3 ? GO:0000166 ... O76290 19916554 MOAD: Ki>35uM
    12119 3bmn:D (1.98) BS02 AX3 ? GO:0000166 ... O76290 19916554 MOAD: Ki>35uM
    12120 3bmo:A (1.6) BS02 AX4 ? GO:0000166 ... O76290 19916554 MOAD: Ki=5.4uM
    PDBbind: -logKd/Ki=5.27, Ki=5.4uM
    12121 3bmo:B (1.6) BS02 AX4 ? GO:0000166 ... O76290 19916554 MOAD: Ki=5.4uM
    12122 3bmo:C (1.6) BS02 AX4 ? GO:0000166 ... O76290 19916554 MOAD: Ki=5.4uM
    12123 3bmo:D (1.6) BS02 AX4 ? GO:0000166 ... O76290 19916554 MOAD: Ki=5.4uM
    12124 3bmq:A (1.7) BS02 AX5 ? GO:0000166 ... O76290 19916554 MOAD: Ki=3.2uM
    PDBbind: -logKd/Ki=5.49, Ki=3.2uM
    12125 3bmq:B (1.7) BS02 AX5 ? GO:0000166 ... O76290 19916554 MOAD: Ki=3.2uM
    12126 3bmq:C (1.7) BS02 AX5 ? GO:0000166 ... O76290 19916554 MOAD: Ki=3.2uM
    12127 3bmq:D (1.7) BS02 AX5 ? GO:0000166 ... O76290 19916554 MOAD: Ki=3.2uM
    12128 3bmy:A (1.6) BS01 CXZ 3.6.4.10 GO:0005524 ... P07900 18197612 MOAD: ic50=0.03uM
    PDBbind: -logKd/Ki=7.52, IC50=0.03uM
    BindingDB: IC50=30nM
    12129 3bnz:A (2.6) BS02 C16 2.1.1.45 GO:0004799 ... P00469 21696158 BindingDB: Ki=22000nM
    12130 3bpc:A (1.85) BS01 KDA N/A N/A N/A 18272175 PDBbind: -logKd/Ki=4.80, Kd=16uM
    12131 3bpc:A (1.85) BS02 KDB N/A N/A N/A 18272175 PDBbind: -logKd/Ki=4.80, Kd=16uM
    12132 3bpc:B (1.85) BS01 KDA N/A N/A N/A 18272175 PDBbind: -logKd/Ki=4.80, Kd=16uM
    12133 3bpr:A (2.8) BS01 OLP 2.7.10.1 GO:0004672 ... Q12866 19028587 PDBbind: -logKd/Ki=4.95, IC50=11.3uM
    12134 3bqc:A (1.5) BS01 EMO 2.7.11.1 GO:0004672 ... P68400 18242640 MOAD: ic50~2uM
    PDBbind: -logKd/Ki=5.73, Ki=1.85uM
    BindingDB: Ki=1850nM, IC50=580nM
    12135 3bqm:B (1.95) BS01 BQM ? N/A P20701 18778938 MOAD: Ki=2nM
    BindingDB: IC50=1.7nM
    12136 3bqm:C (1.95) BS01 BQM ? N/A P20701 18778938 MOAD: Ki=2nM
    BindingDB: IC50=1.7nM
    12137 3bqn:B (1.8) BS01 BQN ? N/A P20701 18783948 MOAD: ic50=2.5nM
    PDBbind: -logKd/Ki=8.60, IC50=2.5nM
    BindingDB: IC50=2.5nM
    12138 3bqn:C (1.8) BS01 BQN ? N/A P20701 18783948 MOAD: ic50=2.5nM
    BindingDB: IC50=2.5nM
    12139 3br9:A (2.3) BS01 DEY 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 18242088 MOAD: ic50=0.062uM
    PDBbind: -logKd/Ki=7.21, IC50=0.062uM
    BindingDB: EC50=210nM, IC50=62nM
    12140 3br9:B (2.3) BS01 DEY 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 18242088 MOAD: ic50=0.062uM
    BindingDB: EC50=210nM, IC50=62nM
    12141 3bra:A (2.3) BS01 AEF 3.4.23.46 GO:0004190 ... P56817 18226904 MOAD: Kd=2000uM
    PDBbind: -logKd/Ki=2.70, Kd=2000uM
    BindingDB: Kd=2000000nM
    12142 3brd:A (2.21) BS01 dna ? GO:0000978 ... V6CLJ5 18381292 PDBbind: Kd=0.032uM
    12143 3brd:A (2.21) BS02 dna ? GO:0000978 ... V6CLJ5 18381292 PDBbind: Kd=0.032uM
    12144 3brf:A (2.47) BS01 dna N/A GO:0000978 ... N/A 18381292 PDBbind: Kd=2.05uM
    12145 3brf:A (2.47) BS02 dna N/A GO:0000978 ... N/A 18381292 PDBbind: Kd=2.05uM
    12146 3brg:C (2.2) BS01 dna ? GO:0000978 ... P31266 18381292 PDBbind: Kd=60nM
    12147 3brg:C (2.2) BS02 dna ? GO:0000978 ... P31266 18381292 PDBbind: Kd=60nM
    12148 3brn:A (2.0) BS01 SRO ? GO:0030682 ... Q09JR9 18445596 MOAD: Kd<2nM
    PDBbind: -logKd/Ki=8.70, Kd=2nM
    12149 3brn:B (2.0) BS01 SRO ? GO:0030682 ... Q09JR9 18445596 MOAD: Kd<2nM
    12150 3bs1:A (1.6) BS01 dna ? GO:0000156 ... P0A0I7 18462677 PDBbind: Kd=80nM
    12151 3bs1:A (1.6) BS02 dna ? GO:0000156 ... P0A0I7 18462677 PDBbind: Kd=80nM
    12152 3bsb:B (2.8) BS01 rna ? GO:0003723 ... Q14671 18328718 PDBbind: Kd=23.9nM
    12153 3bsc:A (2.65) BS01 2PD 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 18242088 PDBbind: -logKd/Ki=4.48, IC50=33uM
    BindingDB: IC50=33000nM
    12154 3bsc:B (2.65) BS01 2PD 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 18242088 BindingDB: IC50=33000nM
    12155 3bsu:A (2.1) BS01 rna 3.1.26.4 N/A O60930 18337749 PDBbind: Kd=0.2uM
    12156 3bsu:A (2.1) BS02 dna 3.1.26.4 N/A O60930 18337749 PDBbind: Kd=0.2uM
    12157 3bsu:B (2.1) BS01 rna 3.1.26.4 N/A O60930 18337749 PDBbind: Kd=0.2uM
    12158 3bsu:B (2.1) BS02 dna 3.1.26.4 N/A O60930 18337749 PDBbind: Kd=0.2uM
    12159 3bsu:C (2.1) BS01 rna 3.1.26.4 N/A O60930 18337749 PDBbind: Kd=0.2uM
    12160 3bsu:C (2.1) BS02 dna 3.1.26.4 N/A O60930 18337749 PDBbind: Kd=0.2uM
    12161 3bsu:F (2.1) BS01 rna 3.1.26.4 N/A O60930 18337749 PDBbind: Kd=0.2uM
    12162 3bsu:F (2.1) BS02 dna 3.1.26.4 N/A O60930 18337749 PDBbind: Kd=0.2uM
    12163 3bsu:G (2.1) BS01 rna 3.1.26.4 N/A O60930 18337749 PDBbind: Kd=0.2uM
    12164 3bsu:G (2.1) BS02 dna 3.1.26.4 N/A O60930 18337749 PDBbind: Kd=0.2uM
    12165 3bsu:H (2.1) BS01 rna 3.1.26.4 N/A O60930 18337749 PDBbind: Kd=0.2uM
    12166 3bsu:H (2.1) BS02 dna 3.1.26.4 N/A O60930 18337749 PDBbind: Kd=0.2uM
    12167 3bsx:A (2.32) BS01 rna ? GO:0003723 ... Q14671 18328718 PDBbind: Kd=2.8nM
    12168 3bsx:B (2.32) BS01 rna ? GO:0003723 ... Q14671 18328718 PDBbind: Kd=2.8nM
    12169 3bt9:A (2.75) BS01 DEQ ? GO:0003677 ... P0A0N3 18616285 PDBbind: -logKd/Ki=5.71, Kd=1.95uM
    12170 3bt9:B (2.75) BS01 DEQ ? GO:0003677 ... P0A0N3 18616285 PDBbind: -logKd/Ki=5.71, Kd=1.95uM
    12171 3btc:A (2.9) BS01 MGR ? GO:0003677 ... P0A0N3 18616285 PDBbind: -logKd/Ki=5.75, Kd=1.77uM
    12172 3bti:A (2.85) BS01 BER ? GO:0003677 ... P0A0N3 18616285 PDBbind: -logKd/Ki=6.14, Kd=0.72uM
    12173 3btj:A (2.98) BS01 DEQ ? GO:0003677 ... P0A0N3 18616285 PDBbind: -logKd/Ki=5.62, Kd=2.4uM
    12174 3btj:B (2.98) BS01 DEQ ? GO:0003677 ... P0A0N3 18616285 PDBbind: -logKd/Ki=5.62, Kd=2.4uM
    12175 3btl:A (2.9) BS01 MGR ? GO:0003677 ... P0A0N3 18616285 PDBbind: -logKd/Ki=5.96, Kd=1.09uM
    12176 3bto:A (1.66) BS04 SSB 1.1.1.1 GO:0004022 ... P00327 9003191 MOAD: Ki=0.72uM
    12177 3bto:B (1.66) BS04 SSB 1.1.1.1 GO:0004022 ... P00327 9003191 MOAD: Ki=0.72uM
    12178 3bto:C (1.66) BS04 SSB 1.1.1.1 GO:0004022 ... P00327 9003191 MOAD: Ki=0.72uM
    12179 3bto:D (1.66) BS04 SSB 1.1.1.1 GO:0004022 ... P00327 9003191 MOAD: Ki=0.72uM
    12180 3bu1:A (1.4) BS01 HSM ? GO:0030682 ... Q09JX9 18445596 MOAD: Kd=7.1nM
    PDBbind: -logKd/Ki=8.15, Kd=7.1nM
    12181 3buf:A (2.3) BS01 AEG 3.4.23.46 GO:0004190 ... P56817 18226904 MOAD: Kd=800uM
    PDBbind: -logKd/Ki=3.10, Kd=800uM
    12182 3bug:A (2.5) BS01 AEH 3.4.23.46 GO:0004190 ... P56817 18226904 MOAD: Kd=660uM
    PDBbind: -logKd/Ki=3.18, Kd=660uM
    BindingDB: Kd=660000nM
    12183 3buh:A (2.3) BS01 AED 3.4.23.46 GO:0004190 ... P56817 18226904 MOAD: Kd=220uM
    PDBbind: -logKd/Ki=3.66, Kd=220uM
    BindingDB: Kd=220000nM
    12184 3bur:A (1.62) BS02 TES 1.3.1.3 GO:0004032 ... P51857 18407998 MOAD: Ki=14.45uM
    12185 3bur:B (1.62) BS02 TES 1.3.1.3 GO:0004032 ... P51857 18407998 MOAD: Ki=14.45uM
    12186 3bv2:A (2.4) BS01 P38 2.7.11.24 GO:0000077 ... Q16539 18364256 MOAD: ic50=0.44nM
    PDBbind: -logKd/Ki=9.36, IC50=0.44nM
    12187 3bv3:A (2.59) BS01 P39 2.7.11.24 GO:0000077 ... Q16539 18364256 PDBbind: -logKd/Ki=9.34, IC50=0.46nM
    BindingDB: Ki=0.46nM
    12188 3bva:A (1.05) BS01 2NC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 18281688 PDBbind: -logKd/Ki=6.52, Kd=0.30uM
    12189 3bva:B (1.05) BS01 2NC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 18281688 MOAD: Ka=3300000M^-1
    PDBbind: -logKd/Ki=6.52, Kd=0.30uM
    12190 3bvb:A (1.3) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 18281688 PDBbind: -logKd/Ki=5.49, Kd=3.2uM
    12191 3bvb:B (1.3) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 18281688 MOAD: Ka=3170000M^-1
    PDBbind: -logKd/Ki=5.49, Kd=3.2uM
    12192 3bwf:A (2.35) BS01 DWC 2.7.11.1 GO:0004672 ... P11309 18425743 MOAD: ic50=200pM
    PDBbind: -logKd/Ki=9.70, IC50=200pM
    12193 3bwj:A (2.3) BS01 ARX 2.7.11.11 GO:0001669 ... P00517 19143565 MOAD: Kd=0.319uM
    PDBbind: -logKd/Ki=6.50, Kd=0.319uM
    12194 3bwj:A (2.3) BS02 ARX 2.7.11.11 GO:0001669 ... P00517 19143565 MOAD: Kd=0.319uM
    PDBbind: -logKd/Ki=6.50, Kd=0.319uM
    12195 3bwk:A (2.42) BS01 C1P 3.4.22.- GO:0006508 ... Q8IIL0 19620707 PDBbind: -logKd/Ki=3.94, Kd=0.114mM
    12196 3bwk:C (2.42) BS01 C1P 3.4.22.- GO:0006508 ... Q8IIL0 19620707 PDBbind: -logKd/Ki=3.94, Kd=0.114mM
    12197 3bx2:A (2.84) BS01 rna ? GO:0003723 ... P25339 18327269 PDBbind: Kd=13.6nM
    12198 3bx2:B (2.84) BS01 rna ? GO:0003723 ... P25339 18327269 PDBbind: Kd=13.6nM
    12199 3bx3:A (3.0) BS01 rna ? GO:0003723 ... P25339 18327269 PDBbind: Kd=57.2nM
    12200 3bx3:B (3.0) BS01 rna ? GO:0003723 ... P25339 18327269 PDBbind: Kd=57.2nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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