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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 48291 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
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  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    8201 2jf4:A (2.2) BS01 VDM 3.2.1.28 GO:0004555 ... P13482 17455176 MOAD: Kd=7nM
    PDBbind: -logKd/Ki=8.15, Kd=7nM
    8202 2jf9:A (2.1) BS03 OHT ? N/A P03372 17283072 BindingDB: IC50=0.790000nM, EC50=10.3nM, Ki=5.7nM
    8203 2jf9:B (2.1) BS02 OHT ? N/A P03372 17283072 BindingDB: IC50=0.790000nM, EC50=10.3nM, Ki=5.7nM
    8204 2jf9:C (2.1) BS04 OHT ? N/A P03372 17283072 BindingDB: IC50=0.790000nM, EC50=10.3nM, Ki=5.7nM
    8205 2jfa:A (2.55) BS02 RAL ? N/A P03372 17283072 BindingDB: IC50=1.8nM, EC50=2.4nM, Ki=0.37nM
    8206 2jfa:B (2.55) BS02 RAL ? N/A P03372 17283072 BindingDB: IC50=1.8nM, EC50=2.4nM, Ki=0.37nM
    8207 2jff:A (1.89) BS01 LK2 6.3.2.9 GO:0005515 ... P14900 17507028 MOAD: Ki=240uM
    BindingDB: Kd=210000nM, IC50=2.80e+5nM
    8208 2jfh:A (1.97) BS01 LK1 6.3.2.9 GO:0005515 ... P14900 17507028 MOAD: Ki=870uM
    PDBbind: -logKd/Ki=3.06, Ki=870uM
    BindingDB: IC50=7.10e+5nM
    8209 2jfz:A (1.86) BS01 003 5.1.1.3 GO:0008360 ... Q9ZLT0 17568739 MOAD: Ki=5.8uM
    PDBbind: -logKd/Ki=5.24, Ki=5.8uM
    8210 2jfz:B (1.86) BS01 003 5.1.1.3 GO:0008360 ... Q9ZLT0 17568739 MOAD: Ki=5.8uM
    8211 2jg0:A (1.5) BS01 TTZ 3.2.1.28 GO:0004555 ... P13482 17455176 MOAD: Kd=15nM
    PDBbind: -logKd/Ki=7.82, Kd=15nM
    8212 2jg8:D (2.05) BS01 SEP ? N/A P02745 18250442 MOAD: Kd=37nM
    PDBbind: -logKd/Ki=6.30, Kd=0.5uM
    8213 2jgs:A (1.9) BS01 BTN ? GO:0009374 ... P02701 18381715 MOAD: Kd=0.000000064M
    PDBbind: -logKd/Ki=6.62, Kd=0.24uM
    8214 2jgs:B (1.9) BS01 BTN ? GO:0009374 ... P02701 18381715 MOAD: Kd=0.000000064M
    PDBbind: -logKd/Ki=6.62, Kd=0.24uM
    8215 2jgs:C (1.9) BS01 BTN ? GO:0009374 ... P02701 18381715 MOAD: Kd=0.000000064M
    8216 2jgs:D (1.9) BS01 BTN ? GO:0009374 ... P02701 18381715 MOAD: Kd=0.000000064M
    PDBbind: -logKd/Ki=6.62, Kd=0.24uM
    8217 2jh0:D (1.7) BS03 701 3.4.21.5 GO:0004252 ... P00734 17336062 MOAD: Ki=2nM
    PDBbind: -logKd/Ki=8.70, Ki=2nM
    BindingDB: Ki=2nM
    8218 2jh5:D (2.5) BS04 895 3.4.21.5 GO:0004252 ... P00734 17336062 MOAD: Ki=367nM
    PDBbind: -logKd/Ki=6.44, Ki=367nM
    BindingDB: Ki=367nM
    8219 2jh6:D (2.21) BS04 894 3.4.21.5 GO:0004252 ... P00734 17336062 MOAD: Ki=17nM
    PDBbind: -logKd/Ki=7.77, Ki=17nM
    BindingDB: Ki=17nM
    8220 2jhf:A (1.0) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 17429946 MOAD: Kd=5nM
    8221 2jhf:B (1.0) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 17429946 MOAD: Kd=5nM
    8222 2jhg:A (1.2) BS04 IBO 1.1.1.1 GO:0004022 ... P00327 17429946 BindingDB: Ki=220000nM
    8223 2jhg:B (1.2) BS04 IBO 1.1.1.1 GO:0004022 ... P00327 17429946 BindingDB: Ki=220000nM
    8224 2jig:A (1.85) BS03 PD2 N/A GO:0005506 ... N/A 17940281 MOAD: Ki=70uM
    8225 2jiu:A (3.05) BS01 AEE 2.7.10.1 GO:0004672 ... P00533 18227510 PDBbind: -logKd/Ki=7.56, Kd=27.6nM
    BindingDB: Kd=5.3nM, IC50=2nM
    8226 2jiw:A (1.95) BS01 BEU 3.2.1.169 GO:0005975 ... Q89ZI2 17728868 PDBbind: -logKd/Ki=4.59, Ki=26uM
    8227 2jj3:A (2.28) BS01 JJ3 ? GO:0003677 ... Q92731 17662603 MOAD: Ki=0.28nM
    PDBbind: -logKd/Ki=9.55, Ki=0.28nM
    BindingDB: Ki=0.28nM
    8228 2jj3:B (2.28) BS01 JJ3 ? GO:0003677 ... Q92731 17662603 MOAD: Ki=0.28nM
    BindingDB: Ki=0.28nM
    8229 2jjb:A (1.9) BS01 3CU 3.2.1.28 GO:0004555 ... P13482 19123216 PDBbind: -logKd/Ki=7.92, Ki=12nM
    8230 2jjb:A (1.9) BS02 GLC 3.2.1.28 GO:0004555 ... P13482 19123216 PDBbind: -logKd/Ki=7.92, Ki=12nM
    8231 2jjk:A (2.0) BS01 R15 3.1.3.11 GO:0000122 ... P09467 18650089 MOAD: ic50=9nM
    PDBbind: -logKd/Ki=8.05, IC50=9nM
    BindingDB: IC50=4nM
    8232 2jjk:B (2.0) BS01 R15 3.1.3.11 GO:0000122 ... P09467 18650089 BindingDB: IC50=4nM
    8233 2jjk:C (2.0) BS01 R15 3.1.3.11 GO:0000122 ... P09467 18650089 PDBbind: -logKd/Ki=8.05, IC50=9nM
    BindingDB: IC50=4nM
    8234 2jjk:D (2.0) BS01 R15 3.1.3.11 GO:0000122 ... P09467 18650089 MOAD: ic50=9nM
    BindingDB: IC50=4nM
    8235 2jjo:A (1.99) BS02 EY5 1.14.13.154 GO:0004497 ... P48635 19625248 MOAD: Kd=3.5uM
    8236 2jjp:A (2.1) BS02 KLN 1.14.13.154 GO:0004497 ... P48635 20845962 MOAD: Kd=1.12uM
    8237 2jk7:A (2.82) BS01 BI6 2.3.2.27 N/A P98170 18954041 PDBbind: -logKd/Ki=7.17, Ki=67nM
    BindingDB: Ki=67nM
    8238 2jke:A (1.7) BS01 NOJ 3.2.1.3 GO:0000272 ... G8JZS4 18848471 MOAD: Ki=59uM
    PDBbind: -logKd/Ki=4.23, Ki=59uM
    8239 2jke:B (1.7) BS01 NOJ 3.2.1.3 GO:0000272 ... G8JZS4 18848471 MOAD: Ki=59uM
    8240 2jkh:A (1.25) BS01 BI7 3.4.21.6 GO:0004252 ... P00742 19101972 MOAD: Ki=9nM
    PDBbind: -logKd/Ki=8.05, Ki=9nM
    8241 2jkk:A (2.0) BS01 BI9 2.7.10.2 GO:0004672 ... Q00944 19030106 MOAD: ic50=6.24nM
    PDBbind: -logKd/Ki=8.20, IC50=6.24nM
    8242 2jkm:A (2.31) BS01 BII 2.7.10.2 GO:0004672 ... Q00944 19030106 MOAD: ic50=17.76nM
    PDBbind: -logKd/Ki=7.75, IC50=17.76nM
    8243 2jko:A (1.65) BS01 BIJ 2.7.10.2 GO:0004672 ... Q00944 19030106 MOAD: ic50=7.7nM
    PDBbind: -logKd/Ki=8.11, IC50=7.7nM
    8244 2jkp:A (1.99) BS01 CTS 3.2.1.3 GO:0000272 ... G8JZS4 18848471 MOAD: Ki=59uM
    PDBbind: -logKd/Ki=4.23, Ki=59uM
    8245 2jkp:B (1.99) BS01 CTS 3.2.1.3 GO:0000272 ... G8JZS4 18848471 MOAD: Ki=59uM
    8246 2jkq:A (2.6) BS01 VG8 2.7.10.2 GO:0004672 ... Q00944 19030106 PDBbind: -logKd/Ki=8.11, IC50=7.7nM
    8247 2jlb:A (2.5) BS01 UDM ? GO:0016757 ... Q8PC69 18818698 MOAD: Kd=4.2uM
    8248 2jlb:B (2.5) BS01 UDM ? GO:0016757 ... Q8PC69 18818698 MOAD: Kd=4.2uM
    8249 2jld:A (2.35) BS02 AG1 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 19035373 MOAD: ic50<0.04nM
    PDBbind: -logKd/Ki=10.40, IC50<0.04nM
    8250 2jld:B (2.35) BS01 AG1 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 19035373 MOAD: ic50<0.04nM
    8251 2jle:A (2.9) BS01 I15 3.1.26.13 GO:0003676 ... Q72547 19175319 PDBbind: -logKd/Ki=6.42, IC50=384nM
    8252 2jle:B (2.9) BS01 I15 3.1.26.13 GO:0003676 ... Q72547 19175319 PDBbind: -logKd/Ki=6.42, IC50=384nM
    8253 2jnp:A (-1.00) BS05 NGH 3.4.24.17 GO:0004222 ... P08254 17710450 PDBbind: -logKd/Ki=6.89, Ki=130nM
    BindingDB: Ki=132nM, IC50=6500nM
    8254 2jpp:A (-1.00) BS01 rna ? GO:0003723 ... P0DPC3 17704818 PDBbind: Kd=85nM
    8255 2jpp:A (-1.00) BS02 rna ? GO:0003723 ... P0DPC3 17704818 PDBbind: Kd=85nM
    8256 2jpp:B (-1.00) BS01 rna ? GO:0003723 ... P0DPC3 17704818 PDBbind: Kd=85nM
    8257 2jpp:B (-1.00) BS02 rna ? GO:0003723 ... P0DPC3 17704818 PDBbind: Kd=85nM
    8258 2jsd:A (-1.00) BS05 NGH 3.4.24.- GO:0004222 ... O60882 17869250 PDBbind: -logKd/Ki=7.77, Kd=17nM
    8259 2jst:B (-1.00) BS01 HLT N/A N/A N/A 18310239 PDBbind: -logKd/Ki=2.59, Kd=2.6mM
    8260 2jt5:A (-1.00) BS05 JT5 3.4.24.17 GO:0004222 ... P08254 17710450 PDBbind: -logKd/Ki=7.74, Ki=18nM
    8261 2jt6:A (-1.00) BS05 JT6 3.4.24.17 GO:0004222 ... P08254 17710450 PDBbind: -logKd/Ki=7.60, Ki=25nM
    BindingDB: Kd=110nM, IC50=47nM
    8262 2jxi:A (-1.00) BS01 dna 1.2.1.88
    1.5.5.2    		 GO:0006355 ... Q88D80 18767154 PDBbind: Kd=340nM
    8263 2jxi:A (-1.00) BS02 dna 1.2.1.88
    1.5.5.2    		 GO:0006355 ... Q88D80 18767154 PDBbind: Kd=340nM
    8264 2jxi:B (-1.00) BS01 dna 1.2.1.88
    1.5.5.2    		 GO:0006355 ... Q88D80 18767154 PDBbind: Kd=340nM
    8265 2jxi:B (-1.00) BS02 dna 1.2.1.88
    1.5.5.2    		 GO:0006355 ... Q88D80 18767154 PDBbind: Kd=340nM
    8266 2jxr:A (2.4) BS02 2Z3 3.4.23.25 GO:0000324 ... P07267 9135120 MOAD: Ki=90nM
    PDBbind: -logKd/Ki=7.05, Ki=90nM
    8267 2k0g:A (-1.00) BS01 CMP ? GO:0005221 ... Q98GN8 19465888 PDBbind: -logKd/Ki=6.97, Kd=107nM
    8268 2k0x:A (-1.00) BS01 PNS ? GO:0000035 ... Q02054 18770515 PDBbind: -logKd/Ki=5.68, Kd=2.1uM
    8269 2k2g:A (-1.00) BS03 DSV 3.4.24.65 GO:0004222 ... P39900 18425585 PDBbind: -logKd/Ki=8.12, Kd=7.5nM
    8270 2k31:A (-1.00) BS01 35G 3.1.4.35 N/A Q8CG03 18534985 PDBbind: -logKd/Ki=8.70, IC50=2.0nM
    8271 2k4i:A (-1.00) BS01 PBU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.47    		 GO:0005198 ... P04584 18657545 PDBbind: -logKd/Ki=3.84, Kd=143uM
    8272 2k62:A (-1.00) BS01 ITL ? GO:0005504 ... P80226 18939814 PDBbind: -logKd/Ki=4.70, Kd=20uM
    8273 2k7f:A (-1.00) BS01 dna ? N/A P35251 20081198 PDBbind: Kd=10nM
    8274 2k7f:A (-1.00) BS02 dna ? N/A P35251 20081198 PDBbind: Kd=10nM
    8275 2kae:A (-1.00) BS01 dna N/A GO:0006355 ... N/A 19095651 PDBbind: Kd=8nM
    8276 2kae:A (-1.00) BS02 dna N/A GO:0006355 ... N/A 19095651 PDBbind: Kd=8nM
    8277 2kaw:A (-1.00) BS01 SUZ ? GO:0016055 ... P51141 19637179 PDBbind: -logKd/Ki=4.97, Ki=10.7uM
    8278 2kce:A (2.2) BS02 D16 2.1.1.45 GO:0000287 ... P0A884 8939755 MOAD: Ki=0.67uM
    PDBbind: -logKd/Ki=6.17, Ki=0.67uM
    BindingDB: IC50=2300nM
    8279 2kce:B (2.2) BS03 D16 2.1.1.45 GO:0000287 ... P0A884 8939755 MOAD: Ki=0.67uM
    PDBbind: -logKd/Ki=6.17, Ki=0.67uM
    BindingDB: IC50=2300nM
    8280 2kdh:A (-1.00) BS02 KDH ? GO:0005509 ... P63316 19542563 PDBbind: -logKd/Ki=2.96, Kd=1.1mM
    8281 2kdz:A (-1.00) BS01 dna ? N/A Q58HP2 19246540 PDBbind: Kd=1.24nM
    8282 2kdz:A (-1.00) BS02 dna ? N/A Q58HP2 19246540 PDBbind: Kd=1.24nM
    8283 2kei:A (-1.00) BS01 dna ? GO:0003677 ... P03023 19450607 PDBbind: Kd=0.05nM
    8284 2kei:A (-1.00) BS02 dna ? GO:0003677 ... P03023 19450607 PDBbind: Kd=0.05nM
    8285 2kei:B (-1.00) BS01 dna ? GO:0003677 ... P03023 19450607 PDBbind: Kd=0.05nM
    8286 2kei:B (-1.00) BS02 dna ? GO:0003677 ... P03023 19450607 PDBbind: Kd=0.05nM
    8287 2kej:A (-1.00) BS01 dna ? GO:0003677 ... P03023 19450607 PDBbind: Kd=0.1nM
    8288 2kej:A (-1.00) BS02 dna ? GO:0003677 ... P03023 19450607 PDBbind: Kd=0.1nM
    8289 2kej:B (-1.00) BS01 dna ? GO:0003677 ... P03023 19450607 PDBbind: Kd=0.1nM
    8290 2kej:B (-1.00) BS02 dna ? GO:0003677 ... P03023 19450607 PDBbind: Kd=0.1nM
    8291 2kek:A (-1.00) BS01 dna ? GO:0003677 ... P03023 19450607 PDBbind: Kd=100nM
    8292 2kek:A (-1.00) BS02 dna ? GO:0003677 ... P03023 19450607 PDBbind: Kd=100nM
    8293 2kek:B (-1.00) BS01 dna ? GO:0003677 ... P03023 19450607 PDBbind: Kd=100nM
    8294 2kek:B (-1.00) BS02 dna ? GO:0003677 ... P03023 19450607 PDBbind: Kd=100nM
    8295 2kfx:T (-1.00) BS02 WW7 ? GO:0005509 ... P63316 19419198 PDBbind: -logKd/Ki=4.00, Kd=100uM
    8296 2kfy:A (-1.00) BS01 rna ? GO:0003676 ... P52597 20526337 PDBbind: Kd=0.42uM
    8297 2kg0:A (-1.00) BS01 rna ? GO:0003676 ... P52597 20526337 PDBbind: Kd=4.6uM
    8298 2kg1:A (-1.00) BS01 rna ? GO:0003676 ... P52597 20526337 PDBbind: Kd=0.42uM
    8299 2kgk:A (-1.00) BS02 N22 1.5.1.3 GO:0000166 ... Q81R22 19323450 BindingDB: IC50=890nM, Ki=300nM
    8300 2kh9:A (-1.00) BS01 rna ? GO:0003676 ... P49960 20181740 PDBbind: Kd=90uM
    8301 2kkf:A (-1.00) BS01 dna 2.1.1.-
    2.1.1.364    		 GO:0003677 ... Q03164 20010842 PDBbind: Kd=44uM
    8302 2kkf:A (-1.00) BS02 dna 2.1.1.-
    2.1.1.364    		 GO:0003677 ... Q03164 20010842 PDBbind: Kd=44uM
    8303 2kmk:A (-1.00) BS01 dna ? N/A Q07120 20153336 PDBbind: Kd=0.26nM
    8304 2kmk:A (-1.00) BS02 dna ? N/A Q07120 20153336 PDBbind: Kd=0.26nM
    8305 2kmx:A (-1.00) BS01 ATP 7.2.2.8 GO:0000166 ... Q04656 19917612 PDBbind: -logKd/Ki=4.08, Kd=83.3uM
    8306 2ko0:A (-1.00) BS01 dna ? GO:0043565 ... Q9NVV9 20144952 PDBbind: Kd=480nM
    8307 2ko0:A (-1.00) BS02 dna ? GO:0043565 ... Q9NVV9 20144952 PDBbind: Kd=480nM
    8308 2ko7:A (-1.00) BS01 JZF 5.2.1.8 GO:0003755 ... Q63J95 21574961 PDBbind: -logKd/Ki=5.19, Ki=6.5uM
    8309 2kp8:A (-1.00) BS01 XIG N/A N/A N/A 20004576 PDBbind: -logKd/Ki=4.00, Kd=100uM
    8310 2kp8:B (-1.00) BS01 XIG N/A N/A N/A 20004576 PDBbind: -logKd/Ki=4.00, Kd=100uM
    8311 2kxn:B (-1.00) BS01 rna ? GO:0003676 ... P62995 21399644 PDBbind: Kd=2.25uM
    8312 2ky8:A (-1.00) BS01 dna ? GO:0003677 ... Q5EFL0 21531701 PDBbind: Kd=2.1uM
    8313 2ky8:A (-1.00) BS02 dna ? GO:0003677 ... Q5EFL0 21531701 PDBbind: Kd=2.1uM
    8314 2l1r:A (-1.00) BS03 SXK ? GO:0005509 ... P63316 20801130 PDBbind: -logKd/Ki=3.57, Kd=270uM
    8315 2l2k:B (-1.00) BS01 rna 3.5.4.37 N/A Q91ZS8 20946981 PDBbind: Kd=370nM
    8316 2l3c:A (-1.00) BS01 rna 3.5.4.37 N/A P51400 20946981 PDBbind: Kd=330nM
    8317 2l41:A (-1.00) BS01 rna ? GO:0003676 ... P38996 21084293 PDBbind: Kd=763uM
    8318 2l4l:A (-1.00) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 21227929 PDBbind: Kd=1.6uM
    8319 2l65:A (-1.00) BS01 MRP ? N/A Q8KNF0 17168523 PDBbind: -logKd/Ki=4.22, Kd<60uM
    8320 2l65:A (-1.00) BS02 MTC ? N/A Q8KNF0 17168523 PDBbind: -logKd/Ki=4.22, Kd<60uM
    8321 2l84:A (-1.00) BS01 J28 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q92793 21513889 PDBbind: -logKd/Ki=7.72, Kd=19nM
    BindingDB: IC50=5000nM, Kd=19600nM
    8322 2l8r:A (-1.00) BS01 APR 3.2.2.-
    3.5.1.-    		 GO:0001883 ... Q9Y530 21849506 PDBbind: -logKd/Ki=3.92, Ki=119.3uM
    8323 2l98:A (-1.00) BS03 STL ? GO:0005509 ... P63316 21226534 PDBbind: -logKd/Ki=3.61, Kd=243uM
    8324 2lbs:B (-1.00) BS01 rna 3.1.26.3 GO:0003725 ... Q02555 21742266 PDBbind: Kd=34.1uM
    8325 2lbv:A (-1.00) BS02 ACD ? GO:0005576 ... Q9I9P7 21951132 PDBbind: -logKd/Ki=7.59, Kd=26nM
    8326 2ld5:A (-1.00) BS01 dna ? GO:0000981 ... Q62424 21829694 PDBbind: Kd=7.5nM
    8327 2ld5:A (-1.00) BS02 dna ? GO:0000981 ... Q62424 21829694 PDBbind: Kd=7.5nM
    8328 2leb:A (-1.00) BS01 rna ? GO:0003676 ... Q01130 22002536 PDBbind: Kd=0.27uM
    8329 2lec:A (-1.00) BS01 rna ? GO:0003676 ... Q01130 22002536 PDBbind: Kd=0.22uM
    8330 2lev:A (-1.00) BS01 dna ? N/A Q7DB51 22114557 PDBbind: Kd=1.10uM
    8331 2lev:A (-1.00) BS02 dna ? N/A Q7DB51 22114557 PDBbind: Kd=1.10uM
    8332 2lh8:A (-1.00) BS01 VIB ? GO:0016020 ... P04273 21848803 PDBbind: -logKd/Ki=4.18, Kd=65.36uM
    8333 2lha:A (-1.00) BS01 IHP ? GO:0016020 ... P21579 22475172 PDBbind: -logKd/Ki=5.19, Kd=6.4uM
    8334 2li8:A (-1.00) BS01 rna ? GO:0003676 ... Q9H9Z2 22157959 PDBbind: Kd=0.16nM
    8335 2liq:A (-1.00) BS01 MAG ? GO:0030246 ... B3GA02 22615566 PDBbind: -logKd/Ki=5.85, Kd=1.4uM
    8336 2liq:A (-1.00) BS02 FUC ? GO:0030246 ... B3GA02 22615566 PDBbind: -logKd/Ki=5.85, Kd=1.4uM
    8337 2lk1:A (-1.00) BS01 AQN ? N/A P52756 22162216 PDBbind: -logKd/Ki=4.09, Kd=82uM
    8338 2lkk:A (-1.00) BS01 OLA ? GO:0003682 ... P07148 22713574 PDBbind: -logKd/Ki=6.70, Kd=0.2uM
    BindingDB: Kd=900nM
    8339 2lkk:A (-1.00) BS02 OLA ? GO:0003682 ... P07148 22713574 PDBbind: -logKd/Ki=6.70, Kd=0.2uM
    BindingDB: Kd=900nM
    8340 2lko:A (-1.00) BS01 4IP ? GO:0007229 ... Q96AC1 22030399 PDBbind: -logKd/Ki=5.67, Kd=2.12uM
    8341 2lkx:A (-1.00) BS01 dna ? GO:0000981 ... Q99697 15895993 PDBbind: Kd=2.6nM
    8342 2lkx:A (-1.00) BS02 dna ? GO:0000981 ... Q99697 15895993 PDBbind: Kd=2.6nM
    8343 2ltt:A (-1.00) BS01 dna ? GO:0003677 ... Q9CIP3 23303792 PDBbind: Kd=16nM
    8344 2ltt:B (-1.00) BS01 dna ? GO:0003677 ... Q9CIP3 23303792 PDBbind: Kd=16nM
    8345 2lup:B (-1.00) BS01 rna 3.1.26.3 GO:0003725 ... Q02555 21742266 PDBbind: Kd=34.1uM
    8346 2lwi:A (-1.00) BS02 KOB 3.6.5.2 GO:0003924 ... P01112 23630290 PDBbind: -logKd/Ki=3.11, Ki=773uM
    8347 2ly0:A (-1.00) BS01 A2Y ? GO:0015078 ... Q6XT21 23302696 PDBbind: -logKd/Ki=4.80, IC50=16uM
    8348 2lyb:A (-1.00) BS01 8SP 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0005198 ... P12497 23401539 PDBbind: -logKd/Ki=4.46, Kd=35uM
    8349 2lzg:A (-1.00) BS01 13Q 2.3.2.27 GO:0005634 ... Q00987 22991965 PDBbind: -logKd/Ki=7.77, Kd=16.9nM
    BindingDB: IC50=34nM
    8350 2m3z:A (-1.00) BS03 1HF 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 23485336 PDBbind: -logKd/Ki=6.57, Kd=0.27uM
    8351 2m3z:A (-1.00) BS04 1HF 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 23485336 PDBbind: -logKd/Ki=6.57, Kd=0.27uM
    8352 2m8d:B (-1.00) BS01 rna ? GO:0003676 ... Q07955 23836656 PDBbind: Kd=0.8uM
    8353 2mas:A (2.3) BS02 PIR 3.2.2.2
    3.2.2.3    		 GO:0005829 ... Q27546 9572842 MOAD: Kd=30nM
    PDBbind: -logKd/Ki=7.52, Kd=30nM
    8354 2mas:B (2.3) BS02 PIR 3.2.2.2
    3.2.2.3    		 GO:0005829 ... Q27546 9572842 MOAD: Kd=30nM
    8355 2mas:C (2.3) BS02 PIR 3.2.2.2
    3.2.2.3    		 GO:0005829 ... Q27546 9572842 MOAD: Kd=30nM
    8356 2mas:D (2.3) BS02 PIR 3.2.2.2
    3.2.2.3    		 GO:0005829 ... Q27546 9572842 MOAD: Kd=30nM
    8357 2mb0:B (-1.00) BS01 rna ? GO:0003676 ... P38159 24692659 PDBbind: Kd=18uM
    8358 2mfc:A (-1.00) BS01 rna ? GO:0003723 ... P0DPC3 24561806 PDBbind: Kd=1.9uM
    8359 2mfc:A (-1.00) BS02 rna ? GO:0003723 ... P0DPC3 24561806 PDBbind: Kd=1.9uM
    8360 2mfc:C (-1.00) BS01 rna ? GO:0003723 ... P0DPC3 24561806 PDBbind: Kd=1.9uM
    8361 2mfc:C (-1.00) BS02 rna ? GO:0003723 ... P0DPC3 24561806 PDBbind: Kd=1.9uM
    8362 2mfe:A (-1.00) BS01 rna ? GO:0003723 ... P0DPC3 24561806 PDBbind: Kd=0.185uM
    8363 2mfe:A (-1.00) BS02 rna ? GO:0003723 ... P0DPC3 24561806 PDBbind: Kd=0.185uM
    8364 2mfe:C (-1.00) BS01 rna ? GO:0003723 ... P0DPC3 24561806 PDBbind: Kd=0.185uM
    8365 2mfe:C (-1.00) BS02 rna ? GO:0003723 ... P0DPC3 24561806 PDBbind: Kd=0.185uM
    8366 2mff:A (-1.00) BS01 rna ? GO:0003723 ... P0DPC3 24561806 PDBbind: Kd=1.5uM
    8367 2mff:A (-1.00) BS02 rna ? GO:0003723 ... P0DPC3 24561806 PDBbind: Kd=1.5uM
    8368 2mff:C (-1.00) BS01 rna ? GO:0003723 ... P0DPC3 24561806 PDBbind: Kd=1.5uM
    8369 2mff:C (-1.00) BS02 rna ? GO:0003723 ... P0DPC3 24561806 PDBbind: Kd=1.5uM
    8370 2mfg:A (-1.00) BS01 rna ? GO:0003723 ... P0DPC3 24561806 PDBbind: Kd=2.9uM
    8371 2mfg:A (-1.00) BS02 rna ? GO:0003723 ... P0DPC3 24561806 PDBbind: Kd=2.9uM
    8372 2mfg:C (-1.00) BS01 rna ? GO:0003723 ... P0DPC3 24561806 PDBbind: Kd=2.9uM
    8373 2mfg:C (-1.00) BS02 rna ? GO:0003723 ... P0DPC3 24561806 PDBbind: Kd=2.9uM
    8374 2mfh:A (-1.00) BS01 rna ? GO:0003723 ... P0DPC3 24561806 PDBbind: Kd=3.5uM
    8375 2mfh:A (-1.00) BS02 rna ? GO:0003723 ... P0DPC3 24561806 PDBbind: Kd=3.5uM
    8376 2mfh:C (-1.00) BS01 rna ? GO:0003723 ... P0DPC3 24561806 PDBbind: Kd=3.5uM
    8377 2mfh:C (-1.00) BS02 rna ? GO:0003723 ... P0DPC3 24561806 PDBbind: Kd=3.5uM
    8378 2mjh:A (-1.00) BS01 rna ? GO:0003676 ... Q17339 24838563 PDBbind: Kd=0.061uM
    8379 2mji:A (-1.00) BS01 KTR ? GO:0005324 ... P12104 25144524 PDBbind: -logKd/Ki=4.25, Kd=56.7uM
    BindingDB: Kd=5.67e+4nM, Ki=9.4e+3nM
    8380 2mki:A (-1.00) BS01 rna ? GO:0003676 ... Q17RY0 24990967 PDBbind: Kd=15.8uM
    8381 2mkk:A (-1.00) BS01 rna ? GO:0003676 ... Q9BZB8 24990967 PDBbind: Kd=1.58uM
    8382 2mkn:A (-1.00) BS01 rna ? GO:0003676 ... Q9UL40 24521053 PDBbind: Kd=8uM
    8383 2mkn:A (-1.00) BS02 rna ? GO:0003676 ... Q9UL40 24521053 PDBbind: Kd=8uM
    8384 2mlm:A (-1.00) BS01 2W7 N/A N/A N/A 25282649 PDBbind: -logKd/Ki=5.21, IC50=6.11uM
    8385 2moe:A (-1.00) BS01 dna 3.2.2.- GO:0003677 ... O95243 25183517 PDBbind: Kd=6.4uM
    8386 2mov:A (-1.00) BS01 IOR ? N/A Q15109 24824951 PDBbind: -logKd/Ki=7.40, Kd=40nM
    8387 2mqv:A (-1.00) BS01 rna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... P03355 25209668 PDBbind: Kd=33nM
    8388 2mru:A (-1.00) BS01 dna ? GO:0003677 ... P0AE72 25564525 PDBbind: Kd=5.6uM
    8389 2mru:A (-1.00) BS02 dna ? GO:0003677 ... P0AE72 25564525 PDBbind: Kd=5.6uM
    8390 2mru:B (-1.00) BS01 dna ? GO:0003677 ... P0AE72 25564525 PDBbind: Kd=5.6uM
    8391 2mru:B (-1.00) BS02 dna ? GO:0003677 ... P0AE72 25564525 PDBbind: Kd=5.6uM
    8392 2ms1:A (-1.00) BS01 rna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... P03355 25209668 PDBbind: Kd=4nM
    8393 2mtv:A (-1.00) BS01 rna ? GO:0003723 ... Q9QY02 25389274 PDBbind: Kd=0.103uM
    8394 2mxf:A (-1.00) BS01 dna ? N/A Q9HW86 26068099 PDBbind: Kd=10.7uM
    8395 2mxf:A (-1.00) BS02 dna ? N/A Q9HW86 26068099 PDBbind: Kd=10.7uM
    8396 2mxy:A (-1.00) BS01 rna ? GO:0003676 ... P07910 25216038 PDBbind: Kd=2uM
    8397 2mz1:A (-1.00) BS01 rna ? GO:0003676 ... P07910 25216038 PDBbind: Kd=11uM
    8398 2n06:A (-1.00) BS01 44Z ? GO:0005634 ... O15151 26812210 PDBbind: -logKd/Ki=4.92, Kd=12.0uM
    8399 2n0u:A (-1.00) BS01 48M ? GO:0005634 ... O15151 26812210 PDBbind: -logKd/Ki=6.22, Kd=0.6uM
    8400 2n0w:A (-1.00) BS01 48L ? GO:0005634 ... O15151 26812210 PDBbind: -logKd/Ki=6.15, Kd=0.7uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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