Structure of PDB 8rdu Chain A

Receptor sequence

>8rduA (length=602) Species: 34078 (Scytonema hofmannii) [Search protein sequence]

SSQITIQARLISFESNRQQLWKLMADLNTPLINELLCQLGQHPDFEKWQQ
KGKLPSTVVSQLCQPLKTDPRFAGQPSRLYMSAIHIVDYIYKSWLAIQKR
LQQQLDGKTRWLEMLNSDAELVELSGDTLEAIRVKAAEILAIAMSLSKTL
FDAYQETEDIKSRSAISYLLKNGCKLTDKEEDSEKFAKRRRQVEIQIQRL
TEKLISRMPKGRDLTNAKWLETLLTATTTVAEDNAQAKRWQDILLTRSSS
LPFPLVFETNEDMVWSKNQKGRLCVHFNGLSDLIFEVYCGNRQLHWFQRF
LEDQQTKRKSKNQHSSGLFTLRNGHLVWLEGEGKGEPWNLHHLTLYCCVD
NRLWTEEGTEIVRQEKADEITKFITNMKSDTQQALIQRKQSTLTRINNSF
ERPSQPLYQGQSHILVGVSLGLEKPATVAVVDAIANKVLAYRSIKQLLGD
NYELLNRQRRQQQYLSHERHKAQKNFSPNQFGASELGQHIDRLLAKAIVA
LARTYKAGSIVLPKLGDMREVVQSEIQAIAEQKFPGYIEGQQKYAKQYRV
NVHRWSYGRLIQSIQSKAAQTGIVIEEGKQPIRGSPHDKAKELALSAYNL
RL

3D structure

PDB

8rdu Conformational landscape of the type V-K CRISPR-associated transposon integration assembly.

Chain

Resolution

2.3 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	A	Q3 I4 T5 Q7 R9 I11 S12 R17 I90 R227 K231 S234 R235 P237 K238 R240 N262 Q269 F281 P282 R300 V315 Y316 C317 G318 N319 R320 Q321 L322 H323 N367 Y374 W382 Y474 S476 K478 Q479 N489 R490 R492 R493 Q494 Y497 H500 H503 Q506 N508 F509 P511 E518 L519 H522 R525 K529 K579 R582 V583 H586 Q595 K600 Q603 H620	Q3 I4 T5 Q7 R9 I11 S12 R17 I90 R199 K203 S206 R207 P209 K210 R212 N234 Q241 F253 P254 R272 V287 Y288 C289 G290 N291 R292 Q293 L294 H295 N339 Y346 W354 Y441 S443 K445 Q446 N456 R457 R459 R460 Q461 Y464 H467 H470 Q473 N475 F476 P478 E485 L486 H489 R492 K496 K546 R549 V550 H553 Q562 K567 Q570 H587
BS02	dna	A	S56 S77 R78 K99 R100 Q103 Q104 G107 K108 R110 W111 S175 K176 F179 G201 C202 K203 R217 N306 G307 S309 F401 M405 T414 R421 E558 K566 F567 Y577 A578 Y581 I615 R616	S56 S77 R78 K99 R100 Q103 Q104 G107 K108 R110 W111 S147 K148 F151 G173 C174 K175 R189 N278 G279 S281 F373 M377 T381 R388 E525 K533 F534 Y544 A545 Y548 I582 R583
BS03	dna	A	Q3 Y89 K92 S93 I97 K266 D270 L273 T274 R275 E286 T287 S343 S344 G345 R350 N351 C376 Q420 R421 S424 T425 R428 R502 Q513 G515 S517 R552 Y570 I571 E572 H586 S589 G591 R592	Q3 Y89 K92 S93 I97 K238 D242 L245 T246 R247 E258 T259 S315 S316 G317 R322 N323 C348 Q387 R388 S391 T392 R395 R469 Q480 G482 S484 R519 Y537 I538 E539 H553 S556 G558 R559

External links

PDB	RCSB:8rdu, PDBe:8rdu, PDBj:8rdu
PDBsum	8rdu
PubMed	38834066
UniProt	A0A8M0FGU0

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