Structure of PDB 8jjr Chain G Binding Site BS16

Receptor Information
>8jjr Chain G (length=173) Species: 2950 (Symbiodinium sp.) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EFAAGMAGSKLHGWGEYQFDPAGFATSYPELLGWFRESELKHGRVAMLAY
VGLIVPDAFRLPFEEVQDSSLDLLSAHNKLIGPGLGEGPMWWLLLACGVI
ESFRFKQVGLAFESLTTENAGDLGLRMFAPSSAEGMESMKMKELKNGRLA
MLAIGGALTQGVLFNAHHFPFMS
Ligand information
Ligand IDUIX
InChIInChI=1S/C42H58O5/c1-30(18-14-20-32(3)22-23-37-38(6,7)28-36(46-34(5)43)29-40(37,10)45)16-12-13-17-31(2)19-15-21-33(4)24-25-42-39(8,9)26-35(44)27-41(42,11)47-42/h12-22,24-25,35-36,44-45H,26-29H2,1-11H3/b13-12+,18-14+,19-15+,25-24+,30-16+,31-17+,32-20+,33-21+/t23-,35-,36-,40+,41+,42-/m0/s1
InChIKeyPVNVIBOWBAPFOE-GYMZYDTCSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CC(=CC=CC=C(C)C=CC=C(C)C=C=C1C(CC(CC1(C)O)OC(=O)C)(C)C)C=CC=C(C)C=CC23C(CC(CC2(O3)C)O)(C)C
OpenEye OEToolkits 2.0.7C/C(=C\C=C\C=C(/C)\C=C\C=C(/C)\C=C=C1[C@](C[C@H](CC1(C)C)OC(=O)C)(C)O)/C=C/C=C(\C)/C=C/[C@]23[C@](O2)(C[C@H](CC3(C)C)O)C
CACTVS 3.385CC(=O)O[CH]1CC(C)(C)[C](=[C]=[CH]C(C)=CC=CC(C)=CC=CC=C(C)C=CC=C(C)C=C[C]23O[C]2(C)C[CH](O)CC3(C)C)[C](C)(O)C1
CACTVS 3.385CC(=O)O[C@H]1CC(C)(C)[C](=[C@@]=[CH]\C(C)=C\C=C\C(C)=C\C=C\C=C(C)\C=C\C=C(C)\C=C\[C@@]23O[C@]2(C)C[C@@H](O)CC3(C)C)[C@](C)(O)C1
FormulaC42 H58 O5
Name[(1~{S},5~{R})-3,3,5-trimethyl-5-oxidanyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(1~{S},4~{S},6~{R})-2,2,6-trimethyl-4-oxidanyl-7-oxabicyclo[4.1.0]heptan-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenylidene]cyclohexyl] ethanoate;
Dinoxanthin
ChEMBL
DrugBank
ZINC
PDB chain8jjr Chain G Residue 615 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8jjr Architecture of symbiotic dinoflagellate photosystem I-light-harvesting supercomplex in Symbiodinium.
Resolution2.8 Å
Binding residue
(original residue number in PDB)
K68 R71 F86 L120 C124 I127
Binding residue
(residue number reindexed from 1)
K41 R44 F59 L93 C97 I100
Annotation score1
Gene Ontology
Biological Process
GO:0009765 photosynthesis, light harvesting
Cellular Component
GO:0016020 membrane

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Biological Process

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Cellular Component
External links
PDB RCSB:8jjr, PDBe:8jjr, PDBj:8jjr
PDBsum8jjr
PubMed38493166
UniProtA0AA36I3A4

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