Structure of PDB 6qik Chain w Binding Site BS03

Receptor Information
>6qik Chain w (length=389) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TLLCCNCGTPIDGSTGLVMCYDCIKLTVDITQGIPREANISFCRNCERFL
QPPGQWIRAELESRELLAICLRRLKGLTKVRLVDASFIWTEPHSRRIRIK
LTVQGEAMTNTIIQQTFEVEYIVIAMQCPDCARSYTTNTWRATVQIRQKV
PHKRTFLFLEQLILKHNAHVDTISISEAKDGLDFFYAQKNHAVKMIDFLN
AVVPIKHKKSEELISQDTHTGASTYKFSYSVEIVPICKDDLVVLPKKLAK
SMGNISQFVLCSKISNTVQFMDPTTLQTADLSPSVYWRAPFNALADVTQL
VEFIVLDVDSTGISRGNRVLADITVARTSDLGVNDQVYYVRSHLGGICHA
GDSVMGYFIANSNYNSDLFDGLNIDYVPDVVLVKKLYQR
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain6qik Chain w Residue 602 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6qik Mechanism of completion of peptidyltransferase centre assembly in eukaryotes.
Resolution3.1 Å
Binding residue
(original residue number in PDB)		C19 C35 C38
Binding residue
(residue number reindexed from 1)		C4 C20 C23
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005515 protein binding
GO:0030674 protein-macromolecule adaptor activity
GO:0043023 ribosomal large subunit binding
GO:0070180 large ribosomal subunit rRNA binding
Biological Process
GO:0000055 ribosomal large subunit export from nucleus
GO:0015031 protein transport
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol

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Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6qik, PDBe:6qik, PDBj:6qik
PDBsum6qik
PubMed31115337
UniProtP38861|NMD3_YEAST 60S ribosomal export protein NMD3 (Gene Name=NMD3)

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