Structure of PDB 5dat Chain l4 Binding Site BS03
Receptor Information
>5dat Chain l4 (length=361) Species:
559292
(Saccharomyces cerevisiae S288C) [
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SRPQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYA
VSEKAGHQTSAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFA
PTKTWRKWNVKVNHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLV
VSTDLESIQKTKEAVAALKAVGAHSDLLKVLKSKKLRAGKGKYRNRRWTQ
RRGPLVVYAEDNGIVKALRNVPGVETANVASLNLLQLAPGAHLGRFVIWT
EAAFTKLDQVWGSETVASSKVGYTLPSHIISTSDVTRIINSSEIQSAIRP
AGQATQKRTHVLKKNPLKNKQVLLRLNPYAKVFAAEKLGSKKAEKTGTKP
AAVFTETLKHD
Ligand information
Ligand ID
OHX
InChI
InChI=1S/6H2N.Os/h6*1H2;/q6*-1;+6
InChIKey
OWCQTVJQFLTQTE-UHFFFAOYSA-N
SMILES
Software
SMILES
ACDLabs 12.01
CACTVS 3.370
OpenEye OEToolkits 1.7.0
N[Os](N)(N)(N)(N)N
Formula
H12 N6 Os
Name
osmium (III) hexammine;
osmium(6+) hexaazanide
ChEMBL
DrugBank
ZINC
PDB chain
5dat Chain l4 Residue 401 [
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Receptor-Ligand Complex Structure
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PDB
5dat
Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome
Resolution
3.15 Å
Binding residue
(original residue number in PDB)
K144 I145 P146
Binding residue
(residue number reindexed from 1)
K143 I144 P145
Annotation score
1
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0003723
RNA binding
GO:0003735
structural constituent of ribosome
Biological Process
GO:0002181
cytoplasmic translation
GO:0006412
translation
Cellular Component
GO:0005634
nucleus
GO:0005737
cytoplasm
GO:0005829
cytosol
GO:0005840
ribosome
GO:0022625
cytosolic large ribosomal subunit
GO:1990904
ribonucleoprotein complex
View graph for
Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:5dat
,
PDBe:5dat
,
PDBj:5dat
PDBsum
5dat
PubMed
UniProt
P10664
|RL4A_YEAST Large ribosomal subunit protein uL4A (Gene Name=RPL4A)
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