Structure of PDB 1tw8 Chain D Binding Site BS02
Receptor Information
>1tw8 Chain D (length=255) Species:
727
(Haemophilus influenzae) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
SFIKPIYQDINSILIGQKVKRPKSGTLSGHAAGEPFEKLVYKFLKENLSD
LTFKQYEYLNDLFMKNPAIIGHEARYKLFNSPTLLFLLSRGKAATENWSI
ENLFEEKQNDTADILLVKDQFYELLDVKTRNISKSAQAPNIISAYKLAQT
CAKMIDNKEFDLFDINYLEVDWELNGEDLVCVSTSFAELFKSEPSELYIN
WAAAMQIQFHVRDLDQGFNGTREEWAKSYLKHFVTQAEQRAISMIDKFVK
PFKKY
Ligand information
>1tw8 Chain H (length=13) [
Search DNA sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
gccggtcgaccgg
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
1tw8
Ca2+ binding in the active site of HincII: implications for the catalytic mechanism
Resolution
2.8 Å
Binding residue
(original residue number in PDB)
H31 Y77 S90 G92 K93 Q109 Q138 Y199 N201 A203 A204 R241
Binding residue
(residue number reindexed from 1)
H30 Y76 S89 G91 K92 Q108 Q137 Y198 N200 A202 A203 R240
Binding affinity
PDBbind-CN
: Kd=1.14nM
Enzymatic activity
Enzyme Commision number
3.1.21.4
: type II site-specific deoxyribonuclease.
Gene Ontology
Molecular Function
GO:0003677
DNA binding
GO:0004519
endonuclease activity
GO:0009036
type II site-specific deoxyribonuclease activity
Biological Process
GO:0009307
DNA restriction-modification system
View graph for
Molecular Function
View graph for
Biological Process
External links
PDB
RCSB:1tw8
,
PDBe:1tw8
,
PDBj:1tw8
PDBsum
1tw8
PubMed
15491133
UniProt
P17743
|T2C2_HAEIF Type II restriction enzyme HincII (Gene Name=hincIIR)
[
Back to BioLiP
]