Structure of PDB 5mmm Chain v Binding Site BS01

Receptor Information
>5mmm Chain v (length=80) Species: 3562 (Spinacia oleracea) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFV
SFSSEEEVEAAIQALNNSVLEGQKIRVNKA
Ligand information
>5mmm Chain a (length=1484) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ucucauggagaguucgauccuggcucaggaugaacgcuggcggcaugcuu
aacacaugcaagucggacgggaagugguguuuccaguggcggacggguga
guaacgcguaagaaccugcccuugggaggggaacaacagcuggaaacggc
ugcuaauaccccguaggcugagaagcaaaaggaggaauccgcccgaggag
gggcucgcgucugauuagcuaguuggugagguaauagcuuaccaaggcga
ugaucaguagcugguccgagaggaugaucagccacacugggacugagaca
cggcccagacuccuacgggaggcagcaguggggaauuuuccgcaaugggc
gaaagccugacggagcaaugccgcguggaggcagaaggcccacgggucgu
gaacuucuuuucccggagaagaagcaaugacgguauccggggaauaagca
ucggcuaacucugugccagcagccgcgguaagacagaggaugcaagcguu
auccggaaugauugggcguaaagcgucuguagguggcuuuuuaaguccgc
cgucaaaucccagggcucaacccuggacaggcgguggaaacuaccaagcu
ggaguacgguaggggcagagggaauuuccgguggagcggugaaaugcgua
gagaucggaaagaacaccaacggcgaaagcacucugcugggccgacacug
acacugagagacgaaagcuaggggagcgaaugggauuagauaccccagua
guccuagccguaaacgauggauacuaggcgcugugcguaucgacccgugc
aguguuguagcuaacgcguuaaguaucccgccuggggaguacguucgcaa
gaaugaaacucaaaggaauugacgggggcccgcacaagcgguggagcaug
ugguuuaauucgaugcaaagcgaagaaccuuaccagggcuugacaugccg
cgaauccucuugaaagagaggggugccuucgggaacgcggacacaggugg
ugcauggcugucgucagcucgugccguaagguguuggguuaagucccgca
acgagcgcaacccucguguuuaguugccaacguugaguuuggaacccuga
acagacugccggugauaagccggaggaaggugaggaugacgucaagucau
caugccccuuaugcccugggcgacacacgugcuacaauggccgggacaaa
gggucgcgaucccgcgagggugagcuaaccccaaaaacccguccucaguu
cggauugcaggcugcaacucgccugcaugaagccggaaucgcuaguaauc
gccggucagccauacggcggugaauucguucccgggccuuguacacaccg
cccgucacacuaugggagcuggccaugcccgaagucguuaccuuaaccgc
aaggagggggaugccgaaggcagggcuagugacuggagugaagucguaac
aagguagccguacuggaaggugcggcuggaucac
.........<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<...
..<<<.<<<..<<<..<<.<<<<<.....>>>>>.>>>>>......<<..
.....<<<<.<<..<<<..<<<<<<<.<<<<.....<<<<<......>>>
>>......>>>>....<<<....>>>....<<<....>>>.>>>>>>>.>
>>.>>.>>>><<<....<<<..<<<<<<<<.......>>>>>>>>>>>..
....>>>..<<<<<<<<....>>>>...>>>>.>>.<<<<<.<.......
..>>>>>>.<<<<....>>>>...>>>>>>.........<<<....<<<<
....>>>>..>>>..>>.>>>>>>..<<<<......<<<<....>>>>..
...>>>>....<<<<<<..................>>>>>>......<<<
<<(((...<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>
>>>>..........<<<((.....<<<<...<<<.<<<<..<.<<<<<<<
<<<<.....<<<<<<.....>>>>>>...>>>>>>>>>..>>>..>>>>.
..<<<.<<<<...<<<<<<<....<<<<<<<<...<<<......>>>...
...>>>>>>>.>..........<<....>>.>>>>>>>..>>>>..>>>.
..>>>...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...
>>>>>>>>..........<<<<<<..<<<<<<<<<<<........>>>>>
>>>>>>...<<..))>>.....>>>>>>.>>>.<<<......<<<<....
>>>>....>>>..)))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<
<<<<......<<........>>..........<<<<<<<......<<<<<
<<..<<<<<<<....>>>>>>>...<<....>>..>>>>>.>>.<<<.<<
<..<<<<<<.......<<<<<<<<<....>>>..<<<<......>>>>..
>>>>>>.....<<<<.<<<<<<<...<<<<........>>>>....>>>>
>>>.....<<<<<.....>>>>>........>>>>.........>>>...
>>>>>>>>>...>>>>>>>...>>.>>>>>>>>.....<<.<<<<.....
<<<..<<...<<<....>>>...>>....>>>.....>>>>.>>......
<....<<<<<<<........>>>>>>>....>.....>>>>>>....<<<
<<<<..........>>>>>>>......>>...>>>>>>>>>>.>>....<
..<<.<.<<<<.<<<..<<<<<<<.<<<<....<.<<<<.<<<<..<<..
..>>.>>>>>>>>.>...>>>>.>>>>>>>..>>>.>>>>..>.>>...>
.....<<<<<<<<<....>>>>>>>>>.......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5mmm The complete structure of the chloroplast 70S ribosome in complex with translation factor pY.
Resolution3.4 Å
Binding residue
(original residue number in PDB)		Y187 R256 N258
Binding residue
(residue number reindexed from 1)		Y7 R76 N78
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0003729 mRNA binding
GO:0019843 rRNA binding
Biological Process
GO:1901259 chloroplast rRNA processing
Cellular Component
GO:0005840 ribosome
GO:0009507 chloroplast
GO:0009535 chloroplast thylakoid membrane
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5mmm, PDBe:5mmm, PDBj:5mmm
PDBsum5mmm
PubMed28007896
UniProtP82277|RRP2_SPIOL Small ribosomal subunit protein cS22 (Gene Name=PSRP2)

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