Structure of PDB 8q87 Chain Bi Binding Site BS01

Receptor Information
>8q87 Chain Bi (length=100) Species: 9031 (Gallus gallus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RYPMAVGLNKGYKVTKNVSKPRHCRRRGRLTKHTKFVRDMIREVCGFAPY
ERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKAAAK
Ligand information
>8q87 Chain B5 (length=3638) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
cgcgaccucaggucagacguggcgacccgcugaauuuaagcauauuaguc
agcggaggaaaagaaacuaacgaggauucccucaguaacggcgagugaag
agggaagagcccagcgccgaauccccgccccgcgguggggcgcgggaggu
guggcguacggaagcccccauccccggcgccgcucucggggggcccaagu
ccuucugaucgaggcccagcccgcggacggugugaggccgguagcggccc
ccggcgcgccgggcccggggcuucucggagucggguugcuugggaaugca
gcccaaagcgggugguaaacuccaucuaaggcuaaauaccggcacgagac
cgauagccaacaaguaccguaagggaaaguugaaaagaacuuugaagaga
gaguucaagagggcgugaaaccguuaagagguaaacgggugggguccgcg
cagucggcccggaggauucaacccggcgggccaaggucggccggcgcggg
cgccggauccccgccuccgccgggcgggccggggaccgccgcccggccgg
cguccggcccccgucgggcgcauuuccuccgcggcggugcgccgcgaccg
gcuccgggacggcugggaagggcugccggcgggcagguggcccggcgccg
cgcgagcggccgccggguguuauagccgccgggcccggaucgucgccgaa
ucccggggccgagggagaggaccgccgccgcgcccucccccgggggacgg
gcccgccggcccccggcgccgcuguccgggggcggacugcgcucagugcg
ccccgaccggcggcgccgccgggccgggcucgggccacgccagggcgccc
gggguccgcggcgacgucggcuacccacccgacccgucuugaaacacgga
ccaaggagucuagcacgcgcgcgagucggcggcucgcgcgaaagcccgcg
gcgcaaugaaggugagggccggcgcgcgccggcugaggugggaucccggg
gcggcaggccggaaggccccgggcgcaccaccggcccgucucgcccgccu
cgccggggagguggagcaugagcgcgcgugcuaggacccgaaagauggug
aacuaugccugggcagggcgaagccagaggaaacucugguggagguccgu
agcgguccugacgugcaaaucggucguccgacccggguauaggggcgaaa
gacuaaucgaaccaucuaguagcugguucccuccgaaguuucccucagga
uagcuggcgcucggggcggcggugcaguuuuacccgguaaagcgaaugau
uagaggucuuggggccgaaacgaucucaaccuauucucaaacuuucaaug
gguaagacgcccggcucgcuggcguggagccgggccguggaaugcgagcg
cucagugggccacuuuugguaagcagaacuggcgcugcgggaugaaccga
acgccggguuaaggcgcccgaugccgacgcucaucagagcccagaaaagg
uguugguugaucuagacagcaggacgguggccauggaagucggaacccgc
uaaggaguguguaacaacucaccugccgaaucaacuagcccugaaaaugg
auggcgcuggagcgucgggcccauacccggccgucgccggcggugcggag
ccgcgggggcuacgccgcgacgaguaggagggccgcugcggugcgccugg
aagccuggggcgcgggcccggguggagccgccgcaggugcagaucuuggu
gguaguagcaacuauucaaacgagagcuuugaaggccgaaguggagcagg
guuccaugugaacagcaguugaacaugggucagucgguccuaagcgauag
gcgagcgccguuccgaagggacgggcgauggccuccguugcccucagccg
aucgaaagggagucggguucagauccccgaauccggagcggcggagacgg
gcgccgcgaggcgcccagugcgguaacgcaagcgaucccggagaagccgg
cgggagccccggggagaguucucuuuucuuugugaagggccgggcgcccu
ggaacggguucgccccgagagaggggcccgcgccuuggaaagcgucgcgg
uuccggcggcguccggugagcucucgcuggcccgugaaaauccgggggag
aggguguaaaucucgcgccgggccguacccauauccgcagcaggucucca
aggugaacagccucuggcauguuggaccaauguagguaagggaagucggc
aagccggauccguaacuucgggauaaggauuggcucuaagggcugguagc
agccggcuuagaacuggugcggaccaggggaauccgacuguuuaauuaaa
acaaagcaucgcgaaggcccgcggcggguguugacgcgaugugauuucug
cccagugcucugaaugucaaagugaagaaauucaaugaagcgcggguaaa
cggcgggaguaacuaugacucucuuaagguagccaaaugccucgucaucu
aauuagugacgcgcaugaauggaugaacgagauucccacugucccuaucu
acuauccagcgaaaccacagccaagggaacgggcuuggcggaaucagcgg
ggaaagaagacccuguugagcuugacucuagucuggcgcugugaagagac
augagagguguagaauaagugggaggccccggccgccggugaaauaccac
uacucugaucguuuuuucacuuacccggugaggcgggggggcgagccccg
aggggcucucgcuucuggcgccaagcgcccggcgcgcgccgggcgcgacc
cgcuccggggacagcgucagguggggaguuugacuggggcgguacaccug
ucaaagcguaacgcagguguccuaaggcgagcucagggaggccagaaacc
ucccguggagcagaagggcaaaagcucgcuugaucuugauuuucaguacg
aauacagaccgugaaagcggggccucacgauccuucugacuuuuuggguu
uuaagcaggaggugucagaaaaguuaccacagggauaacuggcuuguggc
ggccaagcguucauagcgacgucgcuuuuugauccuucgaugucggcucu
uccuaucauugugaagcagaauucaccaagcguuggauuguucacccacu
aauagggaacgugagcuggguuuagaccgucgugagacagguuaguuuua
cccuacugaugauguguuguugcgcuaguaauccugcucaguacgagagg
aaccgcagguucagacauuugguguaugugcuuggcugaggagccacugg
agcgaggcuaccaucugugggauuaugacugaacgccucuaagucagaau
ccccccuaaacguagcgauaccgcagcgccgaggcgccucggugggcucg
cgauagccggccgccgccccccucgggcgggcggucggugcggagcgccg
cucguggucgggaccggagcgcggacagauguggcgccgccucucccccg
ccgcguaccgcauguucguggggaacccggugcuaaaucauucguagacg
accugauucugggucgggguuucguacguagcagagcagcucccucgcug
cgaucuauugagagucagcccucgacacaagcuuuugu
.........................<<<<<<.....<......>......
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>>>>>>..[[[..<<<<<...<<<<<<<<<<.....>>>>>>.>>>>...
..>>>>>..<<<<<<<<<....<<<<<<<<.<<.....<<<<<<<<....
<<<<......>>>>.....((......<<<.....))>>>...>.>>>>>
>>.>>>>>>>>>>...>>>>>>>>>.......<<<<<<<........>>>
>>>>.....(((((..<<<<<<)))))..]]]..................
................<<....>>...............<<<......>>
>..................................<<<<<<<<..<<<.<
......<<<<<<<<<<.....<<<<<<<<<....<<<<<<<<<<<..<<.
...<<<.<<<<<<.<<<........>>>.>>>>>>>>>...>>..>>>>>
...>>>>>>>>>>>>>>>......>>>>>>>.>>>.....<<<<<<<<<<
<<<<<<<<<<<<<...<<.<<<<..<<<<<<<.......<<<<<<<<...
..........>>>>>>>>.......>>>>>>>>>>>......>>>>>>..
>>>>>>>>>>>..................<<<<<<<<<<<..>>>>><<<
<<<..<<<<<<<.<<<<<<<<<<<....<<<<<<.<<<<....>>>>.>>
>>>>...>>>>>>>>>>>..>>>>>>>.....>>>>.>>...>>>>>>..
...>>>.>>>>>....>>>>...>>>>>>>>..<<<<........>>>><
<<<<<....<<<<<<<<<<<<<..<<<...<<<<........>>>>...>
>>...<<....>>...<<<<<<<....>>>>>>>..<<<<<...<<<<<<
<<.............>>>>>>>>....>>>>>.<<<<<<<<<.<<<<...
...>>>>>>>>>>>.>>....>>>>>>>>>>>>>..<<.<..<<<<<<<.
....<<<<<<<<<..<<<....<<<<<<<....>>>>>>>.....>>>..
.<<<..<<.<<........>>>>.>>>....>>>>>>>>>...<<.....
..>>......>>>>>>...>..>.>>..<<<<<<....<.<<<....>>>
.><<.<<<<<<<...........<<<.<<<<<<<<<...<<<....<<<.
.<.<<<..<<<<<<.........>>>>>>>>>.>..>>>..>.>>...>>
>>>>>...<<<<<<<<<.<......>>>>>>>>>>.....>>>>>>>>>>
>>..>>..<<<<.<<<<<.....>>>>>.>>>>....<<<......>>>.
..<<<<<<<...<<<(((.......<<<<<.....<<..........<<<
.<<<<<<<<<<.......<<<<<.<<<...<<.........>>...>>>.
........<<......>>...>>>>>...>>>>>>>>>>>>>........
..))).>>...>>>>>..>>>...>>>>>>><<<<<<.<<<.........
.............>>>>>>>>>....>>>>>>...<<<<<<<<.<<....
..<<<<<.<<<....>>>>>>>>...>>>>>>>>>>........>>>>>>
<<.....<<.....<<<<<<.......>>>>>>.<<<.....<<<<..<<
...<<<<<<...<<.....>>.>>>>>>....((<<<<<<...<.....<
<<....>>>..........<<.<<<<<<<<<...>>>>>>>>>>>.....
..>....>>>..<<<<<........>>>>>))<<<<....<<<<<...<<
<<<<<....>>>>>>>...<<<....>>>...<..<<<<<<<...<<<<<
<<<<<<<.<<<<<<<<<<..{{{..>>>>>>....<<<<<<<<<<.<<<<
.....<<<.....>>>.....>>>>>>>>>.>>>>>.....<<<<<<<..
.....>>>>>>>>>>>...>>>>>>>>>>>>.........>>>>>>>..>
..........>>.>>>.>>>>.>>>..>>.....<<......>>.>>>>.
<<<<.....>>>>..>>>....<<<<.....<<<<<<<.<<.........
<.....<<<<<....<....>.....>>>>><<.<<<<<<<<<<<....>
>>>>..>>>>>>.>>............<<<<<<<<<..<<<.........
>>>..<<<<<<<....<<<<.....>>>>......>>>>>>>...<<..<
<<..<<<<<<....<<<...<.<<<<....>>>>.>...>>>.>>>>..>
>>>><<<<<<.......>>>>>>........<...........<<<<<..
.....>>>>>.....>.....>>....>>.>>>>>>>..>..>>.>>>>>
>>..>>>>>>....>>....<<<<<........>>>>>....[[[[[..{
{{.{{......[[[[.{{[[[[..<<<<<.<<<<<<<<<.<<<<<<<<<<
<<.<<<<..........<<<<<..<<<<..>>>>............>>>>
>.>>>>.>>.>>>>>>>>>>...<<<<<.....<<<<..<<.<<<<<<..
..>>>>>>>>..............<<<<<<<<<<..>>>>>>>>>>..>>
>>..>>>>>....>>>>>>>>>..>>>>>...<<<.....>>>..<<<<<
<...........>>>>>>..<<...<<<<<<<...<<<<<<.......>>
>>>>.....<<.[.(((>>....>>>>>>>...<<<..<<<<.......>
>>>..>>><<<<....>>>>>>)))]......((((((.[.((..>>>>>
>.))]))))))..........]]]]..}}]]]].......<<.<.<.<<<
<<<...<<.......>>...>>>>>>...>>.>.>.......<<<<<.<<
<<<<..<.<.<<<<<......>>>>>...>.>.<<<.........>>>..
...>>>>>..>...>>>.>>....<<<<<<<....>>>.>>>>....}}.
.}}}.]]]]].....<<<<<<<<..<<<..<.<<<<<.............
....>>>>>.><<<<....<<<<....<<.<<<<<<<}}}.>>>>>..>>
.>>...>>>>...>>>>.<<<<...<<<<<...........>>>>>...>
>>>..>>>...>>>>>>>>.....<<<<<<<.<<..<<<<....<<<...
.....<<<<<<<<<<..<<<....>>>..>>>>>>>>>>.......>>>.
..<<<<<<.<<<....<<<.<<<<............>>>>>>>..>>>.>
>>>>>..............>>>>..>>>>>>>>><<<...<.........
....>....<<.<<<<<<<.<<<....<<<<.<..<<<<<......>>>>
>..>>>>>...>>>....>>>>.>>>.>>....>>>..
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8q87 Structural insights into inactive ribosome complexes derived from cold-treated chick embryo cells
Resolution2.4 Å
Binding residue
(original residue number in PDB)
G14 Y15 R25 H26 C27 R28 R29 R30 G31 R32 L33 T34 H36 R41 Y53 K67 R68 K74 R76 G78 H80 R82 K84 R85 K86
Binding residue
(residue number reindexed from 1)
G11 Y12 R22 H23 C24 R25 R26 R27 G28 R29 L30 T31 H33 R38 Y50 K64 R65 K71 R73 G75 H77 R79 K81 R82 K83
External links
PDB RCSB:8q87, PDBe:8q87, PDBj:8q87
PDBsum8q87
PubMed
UniProtQ98TF6|RL36_CHICK Large ribosomal subunit protein eL36 (Gene Name=RPL36)

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