Structure of PDB 8t3l Chain B Binding Site BS01

Receptor Information
>8t3l Chain B (length=294) Species: 10116 (Rattus norvegicus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SCIDTCEKNSVLEVIAYSSSETPNRHDMLLVEPLNRLLQDKWDRFVKRIF
YFNFFVYCLYMIIFTAAAYYRPPPYNTVGDYFRVTGEILSVSGGVYFFFR
GIQYFLQRRPSLKSLFVDSYSEILFFVQSLFMLVSVVLYFSQRKEYVASM
VFSLAMGWTNMLYYTRGFQQMGIYAVMIEKMILRDLCRFMFVYLVFLFGF
STAVVTLIEDGKYNSLYSTCLELFKFTIGMGDLEFTENYDFKAVFIILLL
AYVILTYILLLNMLIALMGKIAQESKNIWKLQRAITILDTEKSF
Ligand information
Ligand IDNKN
InChIInChI=1S/C17H35O7P/c1-2-3-4-5-6-7-8-9-10-11-12-13-17(19)23-14-16(18)15-24-25(20,21)22/h16,18H,2-15H2,1H3,(H2,20,21,22)/t16-/m1/s1
InChIKeyFAZBDRGXCKPVJU-MRXNPFEDSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0CCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)O)O
CACTVS 3.370CCCCCCCCCCCCCC(=O)OC[CH](O)CO[P](O)(O)=O
ACDLabs 12.01O=P(OCC(O)COC(=O)CCCCCCCCCCCCC)(O)O
OpenEye OEToolkits 1.7.0CCCCCCCCCCCCCC(=O)OCC(COP(=O)(O)O)O
CACTVS 3.370CCCCCCCCCCCCCC(=O)OC[C@@H](O)CO[P](O)(O)=O
FormulaC17 H35 O7 P
Name(2R)-2-hydroxy-3-(phosphonooxy)propyl tetradecanoate;
14:0 LPA;
myristoyl lysophosphatidic acid
ChEMBLCHEMBL1615121
DrugBank
ZINC
PDB chain8t3l Chain B Residue 801 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8t3l Structural basis of TRPV1 modulation by endogenous bioactive lipids.
Resolution3.6 Å
Binding residue
(original residue number in PDB)		S512 F543 T550 Y554
Binding residue
(residue number reindexed from 1)		S121 F152 T159 Y163
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005216 monoatomic ion channel activity
Biological Process
GO:0006811 monoatomic ion transport
GO:0055085 transmembrane transport
Cellular Component
GO:0016020 membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8t3l, PDBe:8t3l, PDBj:8t3l
PDBsum8t3l
PubMed38698206
UniProtO35433|TRPV1_RAT Transient receptor potential cation channel subfamily V member 1 (Gene Name=Trpv1)

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