Structure of PDB 7fk6 Chain A Binding Site BS01

Receptor Information
>7fk6 Chain A (length=237) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GAMNSSNYAELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTL
NPKTGHLFLKIIHTSVWAGQKRLSQLAKWKTAEEVSALVRSLPKEEQPKQ
IIVTRKAMLDPLEVHMLDFPNIAIRPTELRLPFSAAMSIDKLSDVVMKAT
EPQMVLFNIYDDWLDRISSYTAFSRLTLLLRALKTNEESAKMILLSDPTI
TIKSYHLWPSFTDEQWITIESQMRDLILTEYGRKYNV
Ligand information
Ligand IDWE5
InChIInChI=1S/C12H13NO3/c1-16-12(15)9-7-11(14)13(8-9)10-5-3-2-4-6-10/h2-6,9H,7-8H2,1H3/t9-/m1/s1
InChIKeyOIAHHVOKOCPNJP-SECBINFHSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7COC(=O)C1CC(=O)N(C1)c2ccccc2
CACTVS 3.385COC(=O)[CH]1CN(C(=O)C1)c2ccccc2
CACTVS 3.385COC(=O)[C@H]1CN(C(=O)C1)c2ccccc2
ACDLabs 12.01O=C(OC)C1CC(=O)N(C1)c1ccccc1
OpenEye OEToolkits 2.0.7COC(=O)[C@@H]1CC(=O)N(C1)c2ccccc2
FormulaC12 H13 N O3
Namemethyl (3R)-5-oxo-1-phenylpyrrolidine-3-carboxylate
ChEMBL
DrugBank
ZINCZINC000000050103
PDB chain7fk6 Chain A Residue 2101 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB7fk6 Large-Scale Crystallographic Fragment Screening Expedites Compound Optimization and Identifies Putative Protein-Protein Interaction Sites.
Resolution1.61 Å
Binding residue
(original residue number in PDB)		H1888 F1890 L1988 F1989 N1990
Binding residue
(residue number reindexed from 1)		H56 F58 L156 F157 N158
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0000398 mRNA splicing, via spliceosome
Cellular Component
GO:0005681 spliceosomal complex

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Biological Process
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Cellular Component
External links
PDB RCSB:7fk6, PDBe:7fk6, PDBj:7fk6
PDBsum7fk6
PubMed36260741
UniProtP33334|PRP8_YEAST Pre-mRNA-splicing factor 8 (Gene Name=PRP8)

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