Online Services

●I-TASSER ●QUARK ●LOMETS ●COACH ●COFACTOR ●MUSTER ●SEGMER ●FG-MD ●ModRefiner ●REMO ●SPRING ●COTH ●BSpred ●SVMSEQ ●ANGLOR ●BSP-SLIM ●SAXSTER ●ThreaDom ●EvoDesign ●GPCR-I-TASSER ●BindProf ●BindProfX ●ResQ ●IonCom ●STRUM

●TM-score ●TM-align ●MMalign ●NWalign ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●I-TASSER-MR

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●TM-fold ●DECOYS ●POTENTIAL ●RW ●HPSF ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12

SPRING standalone program

• Source code and executables of SPRING (source.tar.bz2)
• Script to reconstruct full atom model from C alpha traces (reconstruct.zip)

Template libraries for SPRING

The above SPRING package includes a script "download_lib.sh" that automatically download and configure the libraries. ~109 GB if decompressed.

• amino-library (~21Gb): HMM for UniProt20 and for PDB database, used by single-chain threading program in SPRING.
• pdb (~6.2Gb): PDB coordinate files.
• SPRING (~1Mb): PDB chain ID mapping.

---

Reference:

Aysam Guerler, Brandon Govindarajoo, Yang Zhang. Mapping Monomeric Threading to Protein-Protein Structure Prediction. Journal of Chemical Information and Modeling, 53, 717-725 (2013) (Download PDF)

Back to the SPRING homepage