rMSA: deep multiple sequence alignment generation

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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●TM-search ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●DeepMSA2 ●rMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

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rMSA

RNA Multiple Sequence Alignment

rMSA is a composite approach to generate high quality multiple sequence alignment with large alignment depth and diverse sequence sources by merging sequences from NCBI nucleotide (NT) databases and RNAcentral database. Large-scale benchmark data show that rMSA profiles consistently improves RNA secondary structure and contact prediction.

Online server (view example output)

References:

Chengxin Zhang, Yang Zhang, Anna Marie Pyle rMSA: A Sequence Search and Alignment Algorithm to Improve RNA Structure Modeling. Journal of Molecular Biology, 435: 167904 (2023). (download PDF and Support Information)