access BioLip data / peptide information

[rochoa]

Hi all, I want to ask about some information contained in the BioLip database. Specifically, I am talking about the peptide ligands dataset. In the home page there is a link to inspect approximately 27K records of peptide ligands, including their amino acid content and binding affinity when available. Is it possible to download these records in CSV format or is this something the group can share with users? (I remember it was possible in the past)

The information is required for a benchmarking, so I will appreciate if its is possible to access this information up to date.

Thanks in advance
Rodrigo

[xiaogenz]

You can download the library through a script named "download_all_sets.pl" on the webpage (https://zhanggroup.org/BioLiP/weekly.html).

[rochoa]

Thanks, I saw that option but in these files the information is incomplete. I am talking about downloading a complete annotated table after doing this query: https://zhanggroup.org/BioLiP/qsearch_pdb.cgi?lig3=III

[xiaogenz]

We have had a problem updating the SQL library recently. We will provide the data after solving the problem.

[rochoa]

Thank you and I will really appreciate any help regarding that data

Rodrigo

[xiaogenz]

You can download at https://zhanggroup.org/BioLiP/download/ ... 16_154.csv. Please download it as soon as possible as it will be automatically removed soon.

[rochoa]

That is perfect. Thank you very much

Rodrigo

[Ronald Whitt]

Thank you and I will really footiee.com any help regarding that data..