Zhanglab forum

I recently used for server SPRING for the prediction of a viral protein complex. Target id : S1503A-S1503B

However, I noticed that after downloading the models and loading them on PyMol and ChimeraX, the files don't show a predicted structure but instead we get a dotted schematic overview of the predicted model. So, my question is, could you kindly pinpoint where I may have made a mistake ?

Thank you,
Yours Sincerely,
Sairam

Hi

The SPRING major focus on threading and the output model only contains CA trace of the complex, for the full atomic level model, you can use pulcha+FASPR/modeller add the rest main chain and side chain atom.

If you do not have many structures that need the atomic model and do not know how to use modeller or pulcha, you can send us your structure.

Best
IT team

Target id : S1503A-S1503B

Can you tell me where and how can I send you a couple of predicted structures that need to be modelled ?

Thanks for your help,
Sairam

You can send us through the attachment.