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US-align vs TM-align for antibody alignment

Posted: Wed Jul 24, 2024 4:33 pm
by scriblerus
If I want to compare/align 2 antibody pdbs, which method is preferable, US-align or TM-align? Or some other method?

Re: US-align vs TM-align for antibody alignment

Posted: Sat Jul 27, 2024 11:53 am
by zcx@umich.edu
If you are aligning monomeric proteins, TM-align and US-align give the same result.