Zhanglab forum

Posted: **Sat Feb 24, 2024 6:04 am**

Hello, I follow the steps in DeepMSA2-multimer, and after Step 3: MSA_combination.py, I get the ranking of protein complex MSA, and each ranking contains 3 types of MSA: paired.aln, full_paired.aln, full_paired_pad.aln, how do I get the pdb prediction after I have these data?
Is it possible to add a step4 in readme?

Posted: **Sat Feb 24, 2024 1:38 pm**

Dear user,

If you want to get the complex structure, please download the DMFold package instead of DeepMSA2.

https://zhanggroup.org/DMFold/

Best Regards
Wei Zheng

Zhanglab forum

How to obtain protein complex pdb with DMFold？

How to obtain protein complex pdb with DMFold？

Re: How to obtain protein complex pdb with DMFold？