BioLiP Has Fewer Entries Than Before

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gcyoung
Posts: 8
Joined: Wed Mar 08, 2023 9:08 pm

BioLiP Has Fewer Entries Than Before

Post by gcyoung »

I noticed that the BioLiP database has 420307 ligand entries now, as compared to 454406 on July 20 (https://web.archive.org/web/20230720112 ... /index.cgi). Were some entries removed?
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zcx@umich.edu
Posts: 76
Joined: Wed Nov 03, 2021 5:59 pm

Re: BioLiP Has Fewer Entries Than Before

Post by zcx@umich.edu »

Yes, some entries are removed due to correction of van deer Waals radius calculation.
https://github.com/kad-ecoli/mmCIF2BioL ... d9349c02c9
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gcyoung
Posts: 8
Joined: Wed Mar 08, 2023 9:08 pm

Re: BioLiP Has Fewer Entries Than Before

Post by gcyoung »

Ok, good to know.
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