I submitted a job to your server (Job ID: [insert ID]) and reviewed the five predicted models. I selected Model 3 (C-score: -1.20) for further validation since it has the highest C-score. However, TM-score and RMSD values are only provided for Model 1.
I validated Model 3 using SAVES v6.0 and ProSA, which showed better results than Model 1. I also compared Model 3 to top-ranked models using the SWISS-MODEL assessment tool.
Could you please advise:
How can I obtain TM-score and RMSD for the other models (especially Model 3)?
Is it acceptable to calculate these values using third-party tools like SWISS-MODEL?
Thank you for your help!
Best regards,