Zhanglab forum

It will speed up the MSA generation time mainly, which is usually the slowest step during modeling.

We apologize for the delays. We are currently working on repairing the server and hope to return your results asap!

You may try to reset your password again, as the email submission should be working. If not, you may email me at robpearc@umich.edu and I will follow up again.

I-TASSER only currently supports uploading one specified template. Although the coverage of our template library is quite extensive, so the specified PDB or a structurally similar one will most likely already be included in the library.

Your results should be available at https://zhanggroup.org/ResQ/output/R000913/.

We apologize for the delay! Your results are available at https://zhanggroup.org/I-TASSER/output/S629837/.

We are currently catching up on previous jobs, which have been delayed due to a high number of jobs for a related project. Your job should be completed in the order that it was received.

Thanks!

The different models are generated by clustering all of the conformations produced during the folding simulations, so the templates identified for model 1 should be identical to those identified for models 2, 3, 4 etc. The other information, such as the biological function prediction may be obtained ...

I'm not quite sure I understand your question. Would you be able to provide some more information on what you mean? It looks like the two sequences are different and produce different modeling results, although they share several regions with high similarity as the sequences are similar.

Thanks!

This may be an issue with f2py. Have you tried compiling the program using gfortran -static -O3 -ffast-math -lm -o NWalign NWalign.f or g77 -static -O3 -lm -o NWalign NWalign.f, which is recommended for compilation?