Zhanglab forum

Currently, we do not have a new version of EDTsurf specifically for cryo-EM density maps and mmCIF files. However, we are planning updates to address them. Once a new version is available, we will update it on our website

I have a question about EDTSurf, is there a version of the software that can read cryo-EM density maps and mmcif input files? If there is, would it be possible to share it with us?

Dear user,

EDTsurf can extract both the SAS and SES, but it currently cannot extract a triangular mesh that encloses the hydration shell between the SAS and SES. We may consider adding this option in the future.

Best,
Biao

We have update EDTSurf_mac executable in the EDTSurf website (https://zhanggroup.org/EDTSurf/).

We have discovered that the precompiled version of EDTSurf_mac available on the website may be outdated and not fully compatible with the current macOS version. To address this issue, we recommend downloading the source code directly from the EDTSurf website (https://zhanggroup.org/EDTSurf/) and ...

Thank you for reaching out regarding the issue with the EDTSurf outputs. I understand the importance of resolving this matter promptly for your research assistant. After reviewing the provided information, it seems that the EDTSurf program is not generating the XX.dep output files as expected. Based ...

> My research assistant has downloaded the Windows executable of EDTSurf, but he is only getting 3 outputs: XX_cav.pdb, XX.ply, and XX.asa. Critically, the XX.dep output files are missing. > When he runs $ --help: > usage: EDTSurf -i pdbname ... > -o outname > -t 1-MC 2-VCMC > -s 1-VWS 2-SAS 3-MS 4 ...