Zhanglab forum

@zcx Thanks for replying. Can you explain why you think it's not implementable...? I am happy to look into modifying the underlying source code for TMalign with some tips / pointers. Unless I misunderstand, there must be a way to modify the dynamic programming approach to find the optimal rotation ...

Thanks for your reply. I used the `-se` option, but this prevents the alignment from using superposition entirely. What I want to do, is generate an optimal alignment using ROTATION, but WITHOUT TRANSLATION. For example, aligning two structures with default USalign settings, I get the following ...

Thank you for your continued development of the TM-align tool. I am interested in using TM-align for a research project where I am comparing the local structural regions of proteins to eachother. For example, I might want to calculate the TM score between the atoms within a 20Å radius of a "centre" ...