Zhanglab forum

Thank you for the reply. To be explicit, is there a way the output the superimpositions when multiple proteins are aligned to one target? This corresponds to the command: usalign/USalign -dir1 [DIRECTORY]/ [LIST] [QUERY] -outfmt 2 In TM-Align, the simultaneous superimposition of all proteins in the ...

To whom it may concern, I have read: https://zhanggroup.org/forum/viewtopic.php?f=3&t=652&p=1220&hilit=plddt&sid=f7955ab1fd63a9a796a58d46bccafe7c#p1220 Does US-Align take into account pLDDT and BAT scores for AlphaFold and PDB crystal structures? Both are residue location confidence metrics. I ...

Is there a way to output the superimposition of all proteins as seen in TM Align? Is this the equivalent of the align command in pymol?