Zhanglab forum

Can you please at least remove the job? I am unable to submit it again as the server tells me that a job is already present with that email reference. Thank you.

Hi. It seems that a job I submitted days ago on Edock is encountering some kind of issues. The job id is E3535. Can you please check? As I cannot submit other jobs until it is finished. Usually it takes one day to complete.

It seems that the link ftp is wrong. I replaced with https and library subdirectory and now it seems to work.

Thank you. I guess NR database was not downloaded. But if I run download_lib.pl I can see from the log that the attempt to connect to zhanggroup.org (zhanggroup.org)|141.213.137.249|:21... fails and NR db is not going to be dowloaded. Can you fix that? The server seems to not respond. Best, Francesco

jlspzw wrote: ↑Mon Oct 09, 2023 4:14 pm Dear user,

could you zip all your input files and attach them to the forum.

Best
IT Team

Any suggestions? I updated what you required. Thanks.

Sure. This is my input command line: ./runCOACH.pl -libdir /home/francesco/ITLIB/ -protname Albumin -model Albumin_predock.pdb -datadir ../../../Downloads/ Your setting for running COACH is: -pkgdir = /home/francesco/Downloads/I-TASSER5.2 -libdir = /home/francesco/ITLIB -protname = Albumin -datadir ...

Hi. I successfully installed ITASSER 5.2 and all the supporting librairies. When I try to run COACH on a protein I got the following errors, even if the computation seems to move forward: [makemat] FATAL ERROR: Unable to open file psitmp.chk Then the following are displayed: cp: cannot stat 'psitmp ...

Ok Thank you. In the meantime I installed a pyenv environment as a workaround

Hi. I am just trying to run Edock on my workstation but it seems it requires a very old Python version. It is not running on Python3. Is there any missing procedure that I should follow or I must install python2 that is not anymore supported on my Linux system? Thank you!