Dear,
Tasser suit worked fine before, but recently it suddenly show error: warning: MUSTER --- ../ITLIB/PDB/3ee1A1.pdb does not exist!!!!!!
Does it mean that I need to update the lib?
Thanks
tingting
Search found 8 matches
- Thu Oct 19, 2023 9:35 am
- Forum: Main Forum
- Topic: .pdb not exsit
- Replies: 1
- Views: 42655
- Wed Sep 20, 2023 8:22 pm
- Forum: Main Forum
- Topic: GO::parser
- Replies: 1
- Views: 31786
GO::parser
Dear, The running job completed with COACH failing: 7 run COACH to predict function: Ligand-binding site,EC number,GO terms... /lustre1/scratch/351/vsc35107/I-TASSER5.2/I-TASSERmod/runCOACH.pl -pkgdir /lustre1/scratch/351/vsc35107/I-TASSER5.2 -libdir /lustre1/scratch/351/vsc35107/ITLIB -runstyle ...
- Wed Sep 20, 2023 3:43 pm
- Forum: Main Forum
- Topic: I-TASSER suite package size
- Replies: 2
- Views: 32875
Re: I-TASSER suite package size
I see...thanks for the clarification.
- Wed Sep 20, 2023 2:51 pm
- Forum: Main Forum
- Topic: I-TASSER suite package size
- Replies: 2
- Views: 32875
I-TASSER suite package size
Dear, The indication showed that the I-TASSER linbrary files to be downloaded include: Name Size Size (compressed) (decompressed) -------------------------------------------- nr 4.10 GB 7.30 GB PDB 2.00 GB 4.40 GB MTX 0.70 GB 1.80 GB DEP 0.42 GB 2.80 GB SIG 0.44 GB 1.90 GB CNT 0.18 GB 0.87 GB ...
- Wed Sep 20, 2023 5:00 am
- Forum: Main Forum
- Topic: itasser suite output
- Replies: 1
- Views: 42202
itasser suite output
Dear, I followed the thread for similar issue: https://zhanggroup.org/forum/viewtopic.php?f=3&t=721&sid=8816cacda68cab149f4bd574368469ed I didn't see illegal division anymore, but it's been 18 hours, analysis stays in the step with the seq.fasta in example: 4.1 run simulation run 14 serial ...
- Mon Sep 18, 2023 8:13 pm
- Forum: Main Forum
- Topic: itasser suite
- Replies: 4
- Views: 39252
Re: itasser suite
Hi, You can ignore the last reply. I made minor adjustment, and the output is as follows: ✔ [Sep/18 21:54] vsc35107@tier2-p-login-3 /scratch/leuven/351/vsc35107/I-TASSER5.2/I-TASSERmod $ /lustre1/scratch/351/vsc35107/I-TASSER5.2/I-TASSERmod/runI-TASSER.pl -pkgdir /lustre1/scratch/351/vsc35107/I-T ...
- Mon Sep 18, 2023 5:13 pm
- Forum: Main Forum
- Topic: itasser suite
- Replies: 4
- Views: 39252
Re: itasser suite
Hi, I downloaded the NR dir with the link you sent me before, but I still can not run the script, and the error showed: Your library files are not complete, please download library with the script download_lib.pl. download process: > ./download_lib.pl -libdir libdir -P true -B false -N false ...
- Thu Sep 07, 2023 9:51 am
- Forum: Main Forum
- Topic: itasser suite
- Replies: 4
- Views: 39252
itasser suite
Hi, I have been granted the access to ITASSER suite, and followed the instructions from the link: http://zhanglab.ccmb.med.umich.edu/I-TASSER/download/download.php. I am okay with the default nr database, and no need for GO term and PSI-BLAST. The command line and the output are as follows: ❯ docker ...