Zhanglab forum

I've had several issues with getting I-TASSER running -- see https://zhanggroup.org/forum/viewtopic.php?f=3&t=1023&sid=b097fc4b9aec3d73d67715ad81b57681 -- and haven't gotten any further responses addressing the issues. I'm now considering whether installing it in a container will avoid those issues ...

I compared to I-TASSER 5.1 and the java files apparently haven't changed since then. So I wondered whether the java version might make the difference in how this was run. We previously used to have I-TASSER 5.1 successfully working on CentOS7 where I believe the default java version was 7. Now we're ...

Nope. Still stuck here.

I should add that, following those errors I mentioned, the run hangs. So this is what my log looks like: start gnuparallel threading dPPAS2 start gnuparallel threading Env-PPAS start gnuparallel threading MUSTER start gnuparallel threading wPPAS start gnuparallel threading wdPPAS start gnuparallel ...

> please remove the summary* MTX and PDB folders in ITlib folder and re-download the library

I tried this and it didn't fix the problem.

Apologies for the delay-- I thought I'd get notified about replies. Please see if this ticket can help you viewtopic.php?f=3&t=721&p=1314&hilit=za ... 3bab#p1314 Thanks for the response, but I had already tried this before originally posting here, as I described above. It may be caused by library ...

I've been trying standalone I-TASSER 5.2 on Rocky Linux 8. I was first getting start gnuparallel threading dPPAS start gnuparallel threading dPPAS2 start gnuparallel threading Env-PPAS start gnuparallel threading MUSTER start gnuparallel threading wPPAS start gnuparallel threading wdPPAS start ...

Hello,
I'm from the NIH HPC team and Sambit also raised this issue with us. So is there a way around the issue? If we separately obtain HHsearch, can we set it up so that LOMETS uses it? And is there anything else we could set up separately?

thanks and regards
Afif