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Parallel Execution and Hardware Requirements for Local DeepMSA2 Deployment

Last post by fa.rahimzadeh « Thu Jul 17, 2025 5:32 pm

by fa.rahimzadeh » Thu Jul 17, 2025 5:32 pm

0 Replies

50 Views

Last post by fa.rahimzadeh
Thu Jul 17, 2025 5:32 pm
I would like to know the meaning represented by each dimension of the contact map, distance map and HB map.

Last post by Xerianna « Thu Jul 17, 2025 3:17 am
Replies: 3
by Liuyu_20000419 » Tue Jun 24, 2025 3:28 pm

3 Replies

362464 Views

Last post by Xerianna
Thu Jul 17, 2025 3:17 am
I-TASSER Illegal division by zero during MUSTER

Last post by a1t92t « Thu Jul 17, 2025 3:11 am
Replies: 11
by jimgene » Sun Jan 29, 2023 8:12 am
1

2
11 Replies

409272 Views

Last post by a1t92t
Thu Jul 17, 2025 3:11 am
A Java exception occurred during the GNUparallel execution of I-TASSER.

Last post by nanalyly « Wed Jul 16, 2025 6:53 am
Replies: 1
by Peng.G » Mon Jul 14, 2025 6:32 pm

1 Replies

168 Views

Last post by nanalyly
Wed Jul 16, 2025 6:53 am
Unable to access the registration process

Last post by XiZhang « Wed Jul 16, 2025 12:02 am
Replies: 1
by AnnaFior » Tue Jul 15, 2025 10:22 am

1 Replies

72 Views

Last post by XiZhang
Wed Jul 16, 2025 12:02 am
I-TASSER Job S807145 stuck in processing for more than 12 days

Last post by junh « Mon Jul 14, 2025 6:07 am
Replies: 1
by mahdi.pishgahi » Sun Jul 13, 2025 7:32 am

1 Replies

2086 Views

Last post by junh
Mon Jul 14, 2025 6:07 am
Please help me, the protein PDB file I predicted with D-I-TSER does not dock with the ligand

Last post by lxp2695901 « Mon Jul 14, 2025 6:02 am
Replies: 4
by lxp2695901 » Tue Jul 08, 2025 4:22 pm

4 Replies

12039 Views

Last post by lxp2695901
Mon Jul 14, 2025 6:02 am
DeepMsa2_noIMG.py encounters hhblits error

Last post by dimi « Sun Jul 13, 2025 8:11 pm

by dimi » Sun Jul 13, 2025 8:11 pm

0 Replies

1008 Views

Last post by dimi
Sun Jul 13, 2025 8:11 pm
DAMPred Not Up/Functional

Last post by zbiao « Sun Jul 13, 2025 2:23 am
Replies: 1
by Carp_17 » Thu Jul 10, 2025 3:20 pm

1 Replies

7259 Views

Last post by zbiao
Sun Jul 13, 2025 2:23 am
Is My EvoDesign Job Still Running?

Last post by XiZhang « Sun Jul 13, 2025 12:56 am
Replies: 1
by jewelstrade » Fri Jul 11, 2025 8:06 am

1 Replies

7020 Views

Last post by XiZhang
Sun Jul 13, 2025 12:56 am
I-TASSER suite

Last post by XiZhang « Sun Jul 13, 2025 12:48 am
Replies: 1
by MichelleHuel » Sat Jul 12, 2025 9:03 am

1 Replies

4234 Views

Last post by XiZhang
Sun Jul 13, 2025 12:48 am
Server error: failed to parse input

Last post by XiZhang « Sat Jul 12, 2025 7:49 am
Replies: 1
by barkerxavierr » Thu Jul 10, 2025 5:38 am

1 Replies

7114 Views

Last post by XiZhang
Sat Jul 12, 2025 7:49 am
Limitations of EDock?

Last post by XiZhang « Sat Jul 12, 2025 7:37 am
Replies: 1
by Carp_17 » Thu Jul 10, 2025 3:41 pm

1 Replies

7277 Views

Last post by XiZhang
Sat Jul 12, 2025 7:37 am
Site reloading but no results

Last post by Mableaugherty « Mon Jul 07, 2025 2:08 am
Replies: 2
by Markus » Wed Jul 02, 2025 10:13 am

2 Replies

15480 Views

Last post by Mableaugherty
Mon Jul 07, 2025 2:08 am
Using COACH

Last post by ITASSERteam « Sun Jul 06, 2025 2:15 am
Replies: 1
by usualtrident » Wed Jul 02, 2025 3:21 am

1 Replies

14195 Views

Last post by ITASSERteam
Sun Jul 06, 2025 2:15 am
Regarding Modelling of Pentamer Nanobody

Last post by peoplebreast « Wed Jul 02, 2025 8:16 am
Replies: 2
by Ahbab Ali » Thu Oct 26, 2023 4:30 am

2 Replies

58001 Views

Last post by peoplebreast
Wed Jul 02, 2025 8:16 am
why the downloaded version of I-TASSER does not build the "index" file?

Last post by ITASSERteam « Wed Jul 02, 2025 8:01 am
Replies: 1
by Poters » Tue Jul 01, 2025 10:06 am

1 Replies

75841 Views

Last post by ITASSERteam
Wed Jul 02, 2025 8:01 am
error in STRUM

Last post by zbiao « Wed Jul 02, 2025 6:12 am
Replies: 2
by neha18_cmm » Sat Oct 12, 2024 8:27 am

2 Replies

151953 Views

Last post by zbiao
Wed Jul 02, 2025 6:12 am
Modeling a protein with greater than 1,500aa

Last post by ITASSERteam « Tue Jul 01, 2025 7:08 pm
Replies: 1
by jfreestone@mcw.edu » Mon Jun 30, 2025 5:44 pm

1 Replies

172955 Views

Last post by ITASSERteam
Tue Jul 01, 2025 7:08 pm
USalign - sequence dependent alignment

Last post by martingb « Tue Jul 01, 2025 3:31 pm
Replies: 2
by martingb » Mon Jun 30, 2025 11:53 am

2 Replies

216110 Views

Last post by martingb
Tue Jul 01, 2025 3:31 pm
How does it compare with classic docking

Last post by zbiao « Tue Jul 01, 2025 5:52 am
Replies: 2
by Trisheye » Mon Jun 16, 2025 9:25 am

2 Replies

163561 Views

Last post by zbiao
Tue Jul 01, 2025 5:52 am
Unable to Download the Library File 'CE.tar.bz2'

Last post by Tianrui « Tue Jul 01, 2025 3:56 am
Replies: 1
by liujie1993228 » Sat Jun 28, 2025 2:35 am

1 Replies

225664 Views

Last post by Tianrui
Tue Jul 01, 2025 3:56 am
D-I-TASSER results

Last post by TrinityNava « Mon Jun 30, 2025 2:32 am
Replies: 8
by Abd_Compbio » Fri Jun 06, 2025 7:03 am

8 Replies

253154 Views

Last post by TrinityNava
Mon Jun 30, 2025 2:32 am
Request for TM-score and RMSD of Other I-TASSER Models

Last post by ITASSERteam « Sat Jun 28, 2025 7:52 am
Replies: 1
by bladehare » Mon Jun 23, 2025 7:50 am

1 Replies

283226 Views

Last post by ITASSERteam
Sat Jun 28, 2025 7:52 am
Protien format

Last post by Eveive « Fri Jun 27, 2025 7:20 am
Replies: 3
by Muhammed » Sat Jun 08, 2024 7:54 am

3 Replies

366795 Views

Last post by Eveive
Fri Jun 27, 2025 7:20 am
how to view the interaction sites between the two proteins in the results?

Last post by Lillian Quinn « Tue Jun 24, 2025 2:29 am
Replies: 2
by anhuifei » Wed Jun 04, 2025 2:41 am

2 Replies

51010 Views

Last post by Lillian Quinn
Tue Jun 24, 2025 2:29 am
COACH

Last post by raceinrain « Fri Jun 20, 2025 3:45 pm
Replies: 9
by MERT YENEN » Mon Aug 19, 2024 7:24 am

9 Replies

347904 Views

Last post by raceinrain
Fri Jun 20, 2025 3:45 pm
itasser model comptability with ucsf chimera strucure minimization

Last post by Williami « Tue Jun 17, 2025 3:07 am
Replies: 4
by zbu@ccny.cuny.edu » Wed Jan 17, 2024 4:31 pm

4 Replies

40100 Views

Last post by Williami
Tue Jun 17, 2025 3:07 am
Use of D-I-TASSER for structure prediction

Last post by junh « Mon Jun 16, 2025 1:20 pm
Replies: 6
by Abd_Compbio » Sun Jun 08, 2025 8:46 am

6 Replies

247499 Views

Last post by junh
Mon Jun 16, 2025 1:20 pm
the two TM-scores from US-align show a large discrepancy

Last post by loraleednelson « Mon Jun 16, 2025 6:30 am
Replies: 9
by evans » Tue Oct 08, 2024 6:12 am

9 Replies

531908 Views

Last post by loraleednelson
Mon Jun 16, 2025 6:30 am
Results not available from COACH server

Last post by ITASSERteam « Fri Jun 06, 2025 12:03 pm
Replies: 6
by sheila.artesero » Fri May 03, 2024 9:44 am

6 Replies

82806 Views

Last post by ITASSERteam
Fri Jun 06, 2025 12:03 pm
CR-I-Tasser

Last post by Wagary89 « Thu Jun 05, 2025 3:23 am
Replies: 3
by mforoozm » Sun Apr 07, 2024 4:11 pm

3 Replies

167574 Views

Last post by Wagary89
Thu Jun 05, 2025 3:23 am
I really hope I can retrieve the sequence that I submitted.

Last post by hujun1 « Thu Jun 05, 2025 1:39 am
Replies: 4
by Wasen1989 » Wed Jun 04, 2025 6:50 am

4 Replies

11241 Views

Last post by hujun1
Thu Jun 05, 2025 1:39 am
I-TASSER standalone errors

Last post by Craig C. Bennett « Wed Jun 04, 2025 3:06 am
Replies: 6
by harvey@bucknell.edu » Tue Mar 19, 2024 6:16 pm

6 Replies

242235 Views

Last post by Craig C. Bennett
Wed Jun 04, 2025 3:06 am
Use DeepMSA2 output in ColabFold or AlphaFold

Last post by maruusa « Tue Jun 03, 2025 4:09 am
Replies: 2
by Qiping » Wed Mar 13, 2024 3:28 pm

2 Replies

134473 Views

Last post by maruusa
Tue Jun 03, 2025 4:09 am
Please make sure the directory /tmp/ is writable for you

Last post by sloperun3az « Sat May 31, 2025 3:18 am
Replies: 5
by tgrear » Wed Sep 07, 2022 8:22 pm

5 Replies

109313 Views

Last post by sloperun3az
Sat May 31, 2025 3:18 am
D-I-TASSER jobs can't be completed.

Last post by junh « Fri May 30, 2025 4:44 pm
Replies: 2
by sunnyrab » Fri May 30, 2025 2:55 am

2 Replies

67028 Views

Last post by junh
Fri May 30, 2025 4:44 pm
I-TASSER results for your protein: highlighting AA

Last post by bonkmoneybag « Thu May 29, 2025 7:56 am
Replies: 1
by olescaff@utmb.edu » Tue Oct 15, 2024 7:31 pm

1 Replies

107006 Views

Last post by bonkmoneybag
Thu May 29, 2025 7:56 am
Unable to download databases for DeepMSA2

Last post by junh « Sun May 25, 2025 2:03 am
Replies: 4
by dimi » Fri May 16, 2025 12:48 pm

4 Replies

262624 Views

Last post by junh
Sun May 25, 2025 2:03 am
COACH job still running after 1 month

Last post by ITASSERteam « Thu May 22, 2025 5:47 am
Replies: 2
by chuatx » Wed May 29, 2024 6:12 am

2 Replies

304511 Views

Last post by ITASSERteam
Thu May 22, 2025 5:47 am

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