●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

This page contains the whole-set atomic structure decoys of 56 non-homologous small proteins, together with the models selected by the SPICKER clustering program. The backbone structures were generated by the I-TASSER ab initio modeling; the side-chain atoms were added using Pulchra (see Wu S, Skolnick J, Zhang Y: Ab initio modeling of small proteins by iterative TASSER simulations. BMC Biology 2007, 5: 17).

• A non-redundant I-TASSER decoy set (Set-II) with MD minimization is available at http://zhanglab.dcmb.med.umich.edu/decoys/decoy2.html.

Explanations:

• ID-----------------PDB ID of the target proteins.
• Native-------------Experimental structure from the PDB library.
• Length-------------Size of the target proteins.
• Decoys_pdb---------The I-TASSER decoys in standard PDB format; numbers in parathesis are the number of decoys.
• Decoy_Spicker------Same as 'Decoys_pdb', but converted to the format that can be directly used by SPICKER.
• Best_decoy---------The best decoy with the lowest RMSD to the native; 'R/TM' are RMSD/TM-score to the native structure.
• Closc--------------The first model selected by SPICKER, which is the decoy closest to the first SPICKER cluster centroid.