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* US-align (Version 20211003) *
* Universal Structure Alignment of Proteins and Nucleic Acids *
* References: C Zhang, M Shine, AM Pyle, Y Zhang. (2022) Submitted.*
* Please email comments and suggestions to yangzhanglab@umich.edu *
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Name of Structure_1: US351972874A.pdb:A:B:C:D (to be superimposed onto Structure_2)
Name of Structure_2: US351972874B.pdb:B:A::
Length of Structure_1: 603 residues
Length of Structure_2: 300 residues
Aligned length= 294, RMSD= 0.94, Seq_ID=n_identical/n_aligned= 0.497
TM-score= 0.48192 (normalized by length of Structure_1: L=603, d0=8.59)
TM-score= 0.95995 (normalized by length of Structure_2: L=300, d0=6.36)
(You should use TM-score normalized by length of the reference structure)
(":" denotes residue pairs of d < 5.0 Angstrom, "." denotes other aligned residues)
QNLGAAVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKVW---DVIGRSLIIDEGEDDLGRGGHPLSKITGNSGERLACGIIARSAGLF*GAAVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKVW---DVIGRSLIIDEGEDDLGRGGHPLSKITGNSGERLACGIIARSA*GAAVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKVWDVIGRSLIIDEGEDDLGRGGHPLSKITGNSGERLACGIIARSA*NLGAAVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKVWDVIGRSLIIDEGEDDLGRGGHPLSKITGNSGERLACGIIARSAGLF*
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::: *:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::* * *
---VKAVCVLAGSGDVKGVVHFEQQDEGAVSVEGKIEGLTDGLHGFHIHVFGDNTNGCMSAGSHFNPENKNHGAPGDTDRHVGDLGNVTAE-GGVAQFKITDSLISLKGPNSIIGRTAVVHEKADDLGKGGNDESLKTGNAGGRLACGVIGYSP---*VKAVCVLAGSGDVKGVVHFEQQDEGAVSVEGKIEGLTDGLHGFHIHVFGDNTNGCMSAGSHFNPENKNHGAPGDTDRHVGDLGNVTAE-GGVAQFKITDSLISLKGPNSIIGRTAVVHEKADDLGKGGNDESLKTGNAGGRLACGVIGYSP*----------------------------------------------------------------------------------------------------------------------------------------------------*---------------------------------------------------------------------------------------------------------------------------------------------------------*
#Total CPU time is 0.46 seconds
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(water of Structure_1 and Structure_2 in blue and red, respectively; non-water ligand of Structure_1 and Structure_2 in cyan and pink, respectively). |