A benchmark set of 200 nonhomologous PDB proteins used for testing structure alignment algorithms

The test result of CE, DALI, SAL, and TM-align based on this benchmark is summarized at the Table I of
Y. Zhang, J. Skolnick, TM-align: A protein structure alignment algorithm based on TM-score, Nucleic Acids Research, 2005 33: 2302-2309
ID Length PDB files ID Length PDB files ID Length PDB files ID Length PDB files ID Length PDB files
12asA 327 12asA.pdb 153l_ 185 153l_.pdb 16pk_ 415 16pk_.pdb 16vpA 311 16vpA.pdb 19hcA 292 19hcA.pdb
1a02N 280 1a02N.pdb 1a04A 205 1a04A.pdb 1a06_ 279 1a06_.pdb 1a0aA 63 1a0aA.pdb 1a0cA 437 1a0cA.pdb
1a0fA 201 1a0fA.pdb 1a0i_ 332 1a0i_.pdb 1a0p_ 271 1a0p_.pdb 1a0tP 413 1a0tP.pdb 1a12A 401 1a12A.pdb
1a17_ 159 1a17_.pdb 1a1iA 85 1a1iA.pdb 1a1vA 429 1a1vA.pdb 1a1w_ 83 1a1w_.pdb 1a1x_ 106 1a1x_.pdb
1a26_ 351 1a26_.pdb 1a28A 251 1a28A.pdb 1a2oA 347 1a2oA.pdb 1a2pA 108 1a2pA.pdb 1a2vA 654 1a2vA.pdb
1a2zA 220 1a2zA.pdb 1a31A 457 1a31A.pdb 1a32_ 85 1a32_.pdb 1a34A 147 1a34A.pdb 1a3aA 145 1a3aA.pdb
1a3c_ 166 1a3c_.pdb 1a3k_ 137 1a3k_.pdb 1a3qA 285 1a3qA.pdb 1a3wA 492 1a3wA.pdb 1a41_ 221 1a41_.pdb
1a44_ 185 1a44_.pdb 1a48_ 298 1a48_.pdb 1a4iA 285 1a4iA.pdb 1a4mA 349 1a4mA.pdb 1a4pA 92 1a4pA.pdb
1a4sA 503 1a4sA.pdb 1a4yA 460 1a4yA.pdb 1a53_ 247 1a53_.pdb 1a59_ 377 1a59_.pdb 1a5t_ 324 1a5t_.pdb
1a62_ 122 1a62_.pdb 1a6cA 513 1a6cA.pdb 1a6dA 503 1a6dA.pdb 1a6f_ 113 1a6f_.pdb 1a6jA 150 1a6jA.pdb
1a6m_ 151 1a6m_.pdb 1a6q_ 363 1a6q_.pdb 1a6s_ 87 1a6s_.pdb 1a73A 162 1a73A.pdb 1a77_ 315 1a77_.pdb
1a79A 171 1a79A.pdb 1a7j_ 279 1a7j_.pdb 1a7s_ 221 1a7s_.pdb 1a7tA 227 1a7tA.pdb 1a7vA 125 1a7vA.pdb
1a81A 254 1a81A.pdb 1a8d_ 452 1a8d_.pdb 1a8e_ 329 1a8e_.pdb 1a8h_ 500 1a8h_.pdb 1a8i_ 812 1a8i_.pdb
1a8l_ 226 1a8l_.pdb 1a8o_ 66 1a8o_.pdb 1a8p_ 257 1a8p_.pdb 1a8q_ 274 1a8q_.pdb 1a8rA 221 1a8rA.pdb
1a8y_ 338 1a8y_.pdb 1a99A 341 1a99A.pdb 1a9nA 162 1a9nA.pdb 1a9xA 1058 1a9xA.pdb 1a9xB 378 1a9xB.pdb
1aa6_ 696 1aa6_.pdb 1aa7A 158 1aa7A.pdb 1aac_ 105 1aac_.pdb 1ab4_ 477 1ab4_.pdb 1abrB 267 1abrB.pdb
1abv_ 105 1abv_.pdb 1ac5_ 483 1ac5_.pdb 1ac6A 110 1ac6A.pdb 1acc_ 665 1acc_.pdb 1acf_ 125 1acf_.pdb
1aco_ 753 1aco_.pdb 1acz_ 108 1acz_.pdb 1ad1A 264 1ad1A.pdb 1ad2_ 224 1ad2_.pdb 1ad3A 446 1ad3A.pdb
1adn_ 92 1adn_.pdb 1adr_ 76 1adr_.pdb 1adt_ 301 1adt_.pdb 1ae9A 171 1ae9A.pdb 1aep_ 153 1aep_.pdb
1af7_ 274 1af7_.pdb 1af8_ 86 1af8_.pdb 1afj_ 72 1afj_.pdb 1afp_ 51 1afp_.pdb 1afrA 345 1afrA.pdb
1afwA 390 1afwA.pdb 1agg_ 48 1agg_.pdb 1agi_ 125 1agi_.pdb 1agjA 242 1agjA.pdb 1agqA 91 1agqA.pdb
1agrE 128 1agrE.pdb 1ah7_ 245 1ah7_.pdb 1aho_ 64 1aho_.pdb 1ahsA 126 1ahsA.pdb 1aihA 170 1aihA.pdb
1ail_ 70 1ail_.pdb 1air_ 352 1air_.pdb 1aisA 181 1aisA.pdb 1aisB 193 1aisB.pdb 1aiw_ 62 1aiw_.pdb
1ajsA 412 1ajsA.pdb 1ak0_ 264 1ak0_.pdb 1ak4C 145 1ak4C.pdb 1ak5_ 329 1ak5_.pdb 1ak7_ 174 1ak7_.pdb
1akhA 49 1akhA.pdb 1akjD 114 1akjD.pdb 1ako_ 268 1ako_.pdb 1akp_ 114 1akp_.pdb 1aky_ 218 1aky_.pdb
1al01 143 1al01.pdb 1al3_ 237 1al3_.pdb 1allA 160 1allA.pdb 1aln_ 294 1aln_.pdb 1alu_ 157 1alu_.pdb
1alvA 173 1alvA.pdb 1aly_ 146 1aly_.pdb 1am2_ 181 1am2_.pdb 1am7A 150 1am7A.pdb 1am9A 80 1am9A.pdb
1amf_ 231 1amf_.pdb 1amk_ 250 1amk_.pdb 1amm_ 174 1amm_.pdb 1amp_ 291 1amp_.pdb 1amuA 509 1amuA.pdb
1amx_ 150 1amx_.pdb 1an8_ 206 1an8_.pdb 1an9A 340 1an9A.pdb 1aoa_ 247 1aoa_.pdb 1aocA 175 1aocA.pdb
1aoeA 192 1aoeA.pdb 1aohA 143 1aohA.pdb 1aol_ 228 1aol_.pdb 1aop_ 456 1aop_.pdb 1aorA 605 1aorA.pdb
1aoy_ 78 1aoy_.pdb 1aozA 552 1aozA.pdb 1ap8_ 213 1ap8_.pdb 1apj_ 74 1apj_.pdb 1apmE 341 1apmE.pdb
1apq_ 53 1apq_.pdb 1apxA 249 1apxA.pdb 1aq0A 306 1aq0A.pdb 1aqb_ 175 1aqb_.pdb 1aqcA 121 1aqcA.pdb
1aqe_ 110 1aqe_.pdb 1aqt_ 135 1aqt_.pdb 1aquA 281 1aquA.pdb 1aqzA 142 1aqzA.pdb 1arb_ 263 1arb_.pdb
1aru_ 336 1aru_.pdb 1ash_ 147 1ash_.pdb 1ast_ 200 1ast_.pdb 1at0_ 142 1at0_.pdb 1at3A 217 1at3A.pdb
1atb_ 62 1atb_.pdb 1atg_ 231 1atg_.pdb 1atiA 437 1atiA.pdb 1atx_ 46 1atx_.pdb 1atzA 184 1atzA.pdb
1au1A 166 1au1A.pdb 1aua_ 296 1aua_.pdb 1auiA 378 1auiA.pdb 1auiB 165 1auiB.pdb 1auk_ 480 1auk_.pdb
1auoA 218 1auoA.pdb 1autC 240 1autC.pdb 1autL 97 1autL.pdb 1auvA 282 1auvA.pdb 1auyA 163 1auyA.pdb
1auz_ 116 1auz_.pdb 1avaA 403 1avaA.pdb 1avaC 181 1avaC.pdb 1avgI 142 1avgI.pdb 1avpA 204 1avpA.pdb
1avqA 228 1avqA.pdb 1aw0_ 72 1aw0_.pdb 1aw9_ 216 1aw9_.pdb 1awcB 153 1awcB.pdb 1awj_ 77 1awj_.pdb
1ax4A 464 1ax4A.pdb 1ax8_ 130 1ax8_.pdb 1axcA 249 1axcA.pdb 1axiB 191 1axiB.pdb 1axn_ 323 1axn_.pdb

Back to TM-align