Template-based Modeling Results for YRAP_ECOLI

Submitted Primary Sequence

>Length 191
MKALSPIAVLISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQVDDGTLEVRVNSALSKDEQIKKEARINVTAYQGKVLLVGQSPNAELSARAKQIAMGVDGANEVYNEIRQGQPIGLGEASNDTWITTKVRSQLLTSDLVKSSNVKVTTENGEVFLMGLVTEREAKAAADIASRVSGVKRVTTAFTFIK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKALSPIAVLISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQVDDGTLEVRVNSALSKDEQIKKEARINVTAYQGKVLLVGQSPNAELSARAKQIAMGVDGANEVYNEIRQGQPIGLGEASNDTWITTKVRSQLLTSDLVKSSNVKVTTENGEVFLMGLVTEREAKAAADIASRVSGVKRVTTAFTFIK
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEECCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEEEEECCHHHHHHHHHHHHCCCCHHHEEEEEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKALSPIAVLISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQVDDGTLEVRVNSALSKDEQIKKEARINVTAYQGKVLLVGQSPNAELSARAKQIAMGVDGANEVYNEIRQGQPIGLGEASNDTWITTKVRSQLLTSDLVKSSNVKVTTENGEVFLMGLVTEREAKAAADIASRVSGVKRVTTAFTFIK
43110000000000001000000010011211312222221121012110111011002323313330201020221100000202223102102200220320110101012122212131211220011011101213214221020102202000001023410210120014032021011102124
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKALSPIAVLISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQVDDGTLEVRVNSALSKDEQIKKEARINVTAYQGKVLLVGQSPNAELSARAKQIAMGVDGANEVYNEIRQGQPIGLGEASNDTWITTKVRSQLLTSDLVKSSNVKVTTENGEVFLMGLVTEREAKAAADIASRVSGVKRVTTAFTFIK
1	HHPRED-l	2kgs_A	0.124	0.634	4.545	threading_1	-----------------------------------------------------------GASALSL-SLLSISRSGNTVTLIGDFPDEAAKAALMTALNGLLAPGNVIDQIHVDPVVR-----SLDFSSA--EPVFTASVPI--PDFGLKVERDTVTLTGTASSEHKDAVKRAATSTWPDMKIVNNIEVT-
2	HHPRED-g	2kgs_A	0.123	0.639	3.889	threading_2	-----------------------------------------------------------GASALSL-SLLSISRSGNTVTLIGDFPDEAAKAALMTALNGLLAPGNVIDQIHVDPVVR-----SLDFSSA--EPVFTASVPIP--DFGLKVERDTVTLTGTASSEHKDAVKRAATSTWPDMKIVNNIEVTG
3	HHPRED-l	2kgs_A	0.167	0.597	2.521	threading_3	ALSLSLLSISGNTVTLIGLMTALLLAPGNVIDQIHVDPVVR----SLDFSSA--EPVFTASVPI---PDFGLKVERDTVTLTGTAPSSEHKDAVKRAATSTWPDMKIVNNIEVTGQAPPGPPA--------------------------------------------------------------------
4	HHPRED-g	2kgs_A	0.140	0.560	1.491	threading_4	PDEAAKAALMTALNGLLAPGV-------NVIDQIHVDPVV----RSLDFSSA--EPVFTASVPIP---DFGLKVERDTVTLTGTAPSSEHKDAVKRAATSTWPDMKIVNNIEVTGQAPP---GPPA-----------------------------------------------------------------
5	HHPRED-l	2l26_A	0.145	0.613	1.470	threading_5	-------------------------------------------------------------SALSLS-LLSISRSGNTVTLIGDFPDEAAKAALMTALNGLLGV-NVIDQIHVDPVVRSLD-----FSSA--EPVFTASVPIPDF--GLKVERDTVTLTGTASSEHKDAVKRATSTWPDMK-IVNNIEVT-
6	MUSTER	1ahvA	0.135	0.853	0.607	threading_6	KQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQL------------------LGRWNFYGALYGRVLWETIKDAFSAIPGVKFYF--------PEDTPENSVLRVRDKTMQGIPTYDELKWIDWLHLFFSPIAKVSGEDAMMQYAVTKKRCQEA-GLD-FIGTFTVGM
7	SPARKS	2kgsa	0.149	0.634	0.686	threading_7	------------------------------------------------------------GASALSLSLLSISRSGNTVTLIGDFPDEAAKAALMTALNGLPGV-NVIDQIHVDPVVRSLDFSSAEPVFTA---------SVPIPDFGLKVERDTVTLTGTASSEHKDAVKRAATSTWPDMKIVNNIEVTG
8	PROSPECT2	1ry9A	0.098	0.691	0.925	threading_8	MSNINLVQLVRDSLFTIGCPPSI--------ITDLDSHSAITISLDS-------------------MPAINIALVNEQVMLWANFDAPSDVKLQSS--------------------------------AYNILNLMLMNSYSINELVELHRSDEYLQLRVVIKDDYVHDGIVFAEILHEFYQRMEILNGVL
9	PPA-I	2ksmA	0.131	0.639	0.801	threading_9	------------------------------------------------------------GASALSLSLLSISRSGNTVTLIGDFPDEAAKAALMTALNGLAPGVNVIDQIHVDPVVRSLDFSSAEPVFTASV---------PIPDFGLKVERDTVTLTGTASSEHKDAVKRAATSTWPDMKIVNNIEVTG
10	HHPRED-l	3h90_A	0.138	0.796	0.743	threading_10	HGKAESLALAQSMFISGSALFLFLTGIQISPTPMTDPGRWVVRRTQSQAVRADMLHYQS-DVMMNGAIALGLSWY-GWQSLLDRALPDEERQEIIDIVTSWPGVSGAHDL-RTRQSGPTEDSVQAHMVADQVEQAILRRFPG--SDVIIHQDPCSVV----------------------------------

Predicted Tertiary Structure


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TM-score=0.397 to 1th5A SCOP code=d.52.8.1	TM-score=0.418 to 1th5A SCOP code=d.52.8.1	TM-score=0.407 to 1th5A SCOP code=d.52.8.1	TM-score=0.402 to 1th5A SCOP code=d.52.8.1	TM-score=0.415 to 1th5A SCOP code=d.52.8.1