Template-based Modeling Results for YRAI_ECOLI

Submitted Primary Sequence

>Length 231
MSKRTFAVILTLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSWVDNIDGKSRAPFIITPPLFRLEAGDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSDDVNANELTLVFKTRIKMFYRPAHLKGRVNDAWKSLEFKRSDHSLNIYNPTEYYVVFAGLAVDKTDLTSKIEYIAPGEHKQLPLPASGGKNVKWAAINDYGGSSGTETRPLQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSKRTFAVILTLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSWVDNIDGKSRAPFIITPPLFRLEAGDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSDDVNANELTLVFKTRIKMFYRPAHLKGRVNDAWKSLEFKRSDHSLNIYNPTEYYVVFAGLAVDKTDLTSKIEYIAPGEHKQLPLPASGGKNVKWAAINDYGGSSGTETRPLQ
CCHHHHHHHHHHHHHHHHHHHHHCCEEECCEEEEEECCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCEEECCCCEEECCCCCEEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCCCHHHHHHCCEEEECCCEEEEEECCCEEEEEEEEEECCCCCCCCCEEECCCCEEEEECCCCCCCCEEEEEECCCCCCCCCEEEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSKRTFAVILTLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSWVDNIDGKSRAPFIITPPLFRLEAGDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSDDVNANELTLVFKTRIKMFYRPAHLKGRVNDAWKSLEFKRSDHSLNIYNPTEYYVVFAGLAVDKTDLTSKIEYIAPGEHKQLPLPASGGKNVKWAAINDYGGSSGTETRPLQ
432200000000000000000110000022000002224320001011322321000000022233423120100110020233421001002123423432110000002201244424423221000001010200010231322232024222022232101011222100000001124332223011000122120203222222020000012102132111225
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSKRTFAVILTLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSWVDNIDGKSRAPFIITPPLFRLEAGDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSDDVNANELTLVFKTRIKMFYRPAHLKGRVNDAWKSLEFKRSDHSLNIYNPTEYYVVFAGLAVDKTDLTSKIEYIAPGEHKQLPLPASGGKNVKWAAINDYGGSSGTETRPLQ
1	MUSTER	1ze3C	0.392	0.883	3.061	threading_1	------------------------GVALGATRVIYPAGQKQEQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDANNQLPQDRESLFWMNVKAIPSMDKSKLTE-NTLQLAIISRIKLYYRPAKLALPPDQAAEKLRFRRSANSLTLINPTPYYLTVTELNAGTRVL--ENALVPPMGESTVKLPSDAGSNITYRTINDYGALTPKMTGVME
2	SPARKS	1p5ua	0.299	0.883	5.338	threading_2	--------------------SKEYGVTIGESRIIYPLDAAGVMVSVKNTQD-YPVLIQSRIYDENK---EPFVVTPPLFRLDAKQQNSLRIAQAGGVFPRDKESLKWLCVKGIPPKDP-DKDVGVFVQFAINNCIKLLVRPNELKGTPIQFAENLSWKVDGGKLIAENPSPFYMNIGELTFGGKSI--PSHYIPPKSTWAFDLPKGLAGNVSWRIINDQGGLDRLYSKNVT
3	PROSPECT2	1bf8_	0.397	0.883	3.951	threading_3	------------------------GVALGATRVIYPAGQKQEQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDTNNQLPQDRESLFWMNVKAIPSMDKSKL-TENTLQLAIISRIKLYYRPAKLALPPDQAAEKLRFRRSANSLTLINPTPYYLTVTELNAGTRVL--ENALVPPMGESTVKLPSDAGSNITYRTINDYGALTPKMTGVME
4	PPA-I	1ze3C	0.397	0.883	3.086	threading_4	------------------------GVALGATRVIYPAGQKQEQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDTNNQLPQDRESLFWMNVKAIPSMDKS-KLTENTLQLAIISRIKLYYRPAKLALPPDQAAEKLRFRRSANSLTLINPTPYYLTVTELNAGTRVL--ENALVPPMGESTVKLPSDAGSNITYRTINDYGALTPKMTGVME
5	HHPRED-l	2co7_B	0.345	0.853	5.699	threading_5	-------------------ATKLFSVKLGATRVIYHAGTAGATLSVSNPQN-YPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGGDMPTDRETLQWVCIKAVPPE-------TLDLNLSINACDKLIFRPDAVKGTPEDVAGNLRWVETGNKLKVENPTPFYMNLASVTVGGKPIT-GLEYVPPFADKTLN-----HGDIEWRVITDFGGESHPFHYVL-
6	HHPRED-g	2co7_B	0.345	0.853	4.970	threading_6	-------------------ATKLFSVKLGATRVIYHAGTAGATLSVSNPQN-YPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGGDMPTDRETLQWVCIKAVPPE-------TLDLNLSINACDKLIFRPDAVKGTPEDVAGNLRWVETGNKLKVENPTPFYMNLASVTVGGKPIT-GLEYVPPFADKTLN-----HGDIEWRVITDFGGESHPFHYVL-
7	SP3	1p5ua	0.299	0.883	5.213	threading_7	--------------------SKEYGVTIGESRIIYPLDAAGVMVSVKNTQ-DYPVLIQSRIYDENK---EPFVVTPPLFRLDAKQQNSLRIAQAGGVFPRDKESLKWLCVKGIPPKDP-DKDVGVFVQFAINNCIKLLVRPNELKGTPIQFAENLSWKVDGGKLIAENPSPFYMNIGELTFGGKSI--PSHYIPPKSTWAFDLPKGLARNVSWRIINDQGGLDRLYSKNVT
8	SAM-T99	1ze3C	0.392	0.883	4.761	threading_8	------------------------GVALGATRVIYPAGQKQEQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDATNQLPQDRESLFWMNVKAIPSMDKSK-LTENTLQLAIISRIKLYYRPAKLALPPDQAAEKLRFRRSANSLTLINPTPYYLTVTELNAGTRVLE--NALVPPMGESTVKLPSDAGSNITYRTINDYGALTPKMTGVME
9	MUSTER	2co6B	0.332	0.900	3.046	threading_9	----------------LNSATKLFSVKLGATRVIYHAGTG-ATLSVSNPQ-NYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGGDMPTDRETLQWVCIKAVPPENEPGAT--LDLNLSINACDKLIFRPDAVKGTPEDVAGNLRWVETGNKLKVENPTPFYMNLASVTVGGKPIT-GLEYVPPFADKTLNMP-GSHGDIEWRVITDFGGESHPFHYVL-
10	SPARKS	3q48a	0.342	0.810	5.281	threading_10	--------------------------IAQGTRVVFPASEREVTLRVSNTSGT-PVLAQAWIDDGRQDVQVPFSVTPAVTRVEPNGGAVLRIAYLKAPLPTDRESLFWLNILEVPP------------RFSFRSRFKLFFRPSQLKS-VDSAAGKLQWK-FLEVVQVNNPTPYYVSFASVELIGRVMSVGKGMVAPFSTKEFDWME--AASVRYEVINDYGGRNT-HDRALG

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.915 to 1ze3C SCOP code=b.1.11.1	TM-score=0.926 to 1ze3C SCOP code=b.1.11.1	TM-score=0.889 to 1p5uA SCOP code=b.1.11.1	TM-score=0.719 to 1p5uA SCOP code=b.1.11.1	TM-score=0.918 to 1ze3C SCOP code=b.1.11.1