Template-based Modeling Results for YQII_ECOLI

Submitted Primary Sequence

>Length 354
MRYLLIVITFFMGFSSLPAWAMDCYAEHEGGNTVVIGYVPRISIPSDGKKGDKIWQSSEYFMNVFCNNALPGPSPGEEYPSAWANIMMLLASGQDFYNQNSYTFGVTYNGVDYDSTSPLPIAAPVCIDIKGAGTFGNGYKKPAVCSGGPEPQLSVTFPVRVQLYIKLAKNANKVNKKLVLPDEYIALEFKGMSGAGAIEVDKNLTFRIRGLNNIHVLDCFVNVDLEPADGVVDFGKINSRTIKNTSVSETFSVVMTKDPGAACTEQFNILGSFFTTDILSDYSHLDIGNGLLLKIFHNDGTATEFNRFSQFASFSSSSAPSVTAPFRAELSANPAETVVEGPFSKDVILKITYN
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRYLLIVITFFMGFSSLPAWAMDCYAEHEGGNTVVIGYVPRISIPSDGKKGDKIWQSSEYFMNVFCNNALPGPSPGEEYPSAWANIMMLLASGQDFYNQNSYTFGVTYNGVDYDSTSPLPIAAPVCIDIKGAGTFGNGYKKPAVCSGGPEPQLSVTFPVRVQLYIKLAKNANKVNKKLVLPDEYIALEFKGMSGAGAIEVDKNLTFRIRGLNNIHVLDCFVNVDLEPADGVVDFGKINSRTIKNTSVSETFSVVMTKDPGAACTEQFNILGSFFTTDILSDYSHLDIGNGLLLKIFHNDGTATEFNRFSQFASFSSSSAPSVTAPFRAELSANPAETVVEGPFSKDVILKITYN
CHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEEECCCEEECCCCCCCCEEEECCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEECCEECCCCCCCCCCCCCEEECCCCCEECCCEECCCEECCCCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCEEEECCCCEEEEEEECHHHCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCEEEEECCCCCCCEEEEEEEEEEEECCCCCCEECCCCEEEEEEEECC
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRYLLIVITFFMGFSSLPAWAMDCYAEHEGGNTVVIGYVPRISIPSDGKKGDKIWQSSEYFMNVFCNNALPGPSPGEEYPSAWANIMMLLASGQDFYNQNSYTFGVTYNGVDYDSTSPLPIAAPVCIDIKGAGTFGNGYKKPAVCSGGPEPQLSVTFPVRVQLYIKLAKNANKVNKKLVLPDEYIALEFKGMSGAGAIEVDKNLTFRIRGLNNIHVLDCFVNVDLEPADGVVDFGKINSRTIKNTSVSETFSVVMTKDPGAACTEQFNILGSFFTTDILSDYSHLDIGNGLLLKIFHNDGTATEFNRFSQFASFSSSSAPSVTAPFRAELSANPAETVVEGPFSKDVILKITYN
321001000000000122000000102442120110110220100220440210020220201000111131122333110000001112221322213300000000100113122322121210011411101020121110021223242112010102010100220142333121221000010202201111311310101010021020020202010112312000020113113221233201010122222202320101000101211232121211100002011341220201120100102232221010102010111223202302011101020125
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRYLLIVITFFMGFSSLPAWAMDCYAEHEGGNTVVIGYVPRISIPSDGKKGDKIWQSSEYFMNVFCNNALPGPSPGEEYPSAWANIMMLLASGQDFYNQNSYTFGVTYNGVDYDSTSPLPIAAPVCIDIKGAGTFGNGYKKPAVCSGGPEPQLSVTFPVRVQLYIKLAKNANKVNKKLVLPDEYIALEFKGMSGAGAIEVDKNLTFRIRGLNNIHVLDCFVNVDLEPADGVVDFGKINSRTIKNTSVSETFSVVMTKDPGAACTEQFNILGSFFTTDILSDYSHLDIGNGLLLKIFHNDGTATEFNRFSQFASFSSSSAPSVTAPFRAELSANPAETVVEGPFSKDVILKITYN
1	MUSTER	1klfP	0.122	0.766	1.253	threading_1	---------------------FACKTANGTAIPIGGGSANYVNLAPVVNVGNLVVDLST---QIFCHNDY----PETITDYVTLQRGSAYGGVLS-----NFSGTVKYSGSSYPFPTTSETPR--VVYNSRTDKPWP---------------------------VALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPTGGC--DVSARDVTVTL--------PDYPGSVPIPLTVYCAKSQN------LGYYLSGTTADAGNSIFSPAQGVGVQLTR-NGTIIPANNTVSLGAVGTSA---VSLGLTANYARTGG-QVTAGNVQSIIGVTFVYQ
2	SPARKS	3jwne	0.174	0.407	2.693	threading_2	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ADSTITVRDNGCSVAAESTNFTVDLMENAAKQFNNTTPVVPFRILLSPCGNAVSAVKVGFTGVADSHNALALENTVSAAAGLGIQLLNEQQNQIPLNAPSALSWTTLTPGKPNTLNFYARLMATQV-PVTAGHINATATFTLEYQ
3	PROSPECT2	2w5nA	0.055	0.918	1.587	threading_3	A-----------MKPAGKTFSNVEIFDPPTNYRDPQVLYARPLE---LSDGTLLGEPPNVWFPIVKSKDGGKKDTQNNWGLRYQPQLYELPRAFGKYPKGTVLCSGSSIP-----SDLSETLIEVYASRDKGYTWEFVSHVALGGEALPNPGLTPVWEPFLMTYILYYSDQRDNATH---SQKLVHQTTTDLKKWSKV-------VDDTKYADYYARPGMPTVAKLPNNEYIVYEYGGGPNPPAGSDYWFPVYYRLSKDPQKFLNKAHHQIVSNDGTTPAGSPYVYGGKNGTIVVSCGTRSEIFTNQAKKWDVPQPTAYTRSLLTFDLLMIMGAGILPPAGGKNTVSASVVRLS
4	PPA-I	1klfP	0.085	0.766	1.628	threading_4	---------------------------------------------------------------FACKTANGTAIPIGG-----GSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGFSGTVKYSGSSYPFPTTSETPRVVYNSKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPTGGCDVSARDVTVT----------LPDYPGSVPIPLTVYCAKSQNLGYYLSGTTADAGNSIFTNTASFSPAQGVGVQLTR-NGTIIPANNTVSLGAVGTSA---VSLGLTANYARTGG-QVTAGNVQSIIGVTFVYQ
5	HHPRED-l	3jwn_H	0.144	0.763	4.322	threading_5	---------------------FACKTANGTGSANVYVNL-----APAVNVGQNL--VVDLSTQIFCHNDYPETI----TDYV--TLQRGSAYG-GV--LSSFSGTVKYNGSSYPFPTTSETP---------RVV----------------YNSRTDKPWPVALYLTPVSS--AGGVAIKAGSLIAVLILRQTNNYN--SDDFQFVWNIYANNDVVVPTGGCDV--SARDVTVTLPDYPG--------SVPIPLTVYCAKSQN--LGYYLSGTTADAGSIFTNTSFSPAQGVGVQLT-RNGTIIPANNTVSLGAVG---TSAVSLGLTANYARTG-GQVTAGNVQSIIGVTFVY-
6	HHPRED-g	3jwn_H	0.144	0.766	3.779	threading_6	---------------------FACKTANGTA---IPIGGGNVYVNPAVNVGQNL--VVDLSTQIFCHNDYPETI--TDYVTLQRGS----AYG-GVL--SSFSGTVKYNGSSYPF--------------------------PTTSETRVVYNSRTDKPWPVALYLT--PVSS-AGGVAIKAGLIAVLILRQTNNYN--SDDFQFVWNIYANNDVVVPTGGCDV--SARDVTVTLPDYPG--------SVPIPLTVYCAKS--QNLGYYLSGTTADGNSIFTNTAFSPAQGVGVQLT-RNGTIIPANNTVSLGAVG---TSAVSLGLTANYARTG-GQVTAGNVQSIIGVTFVYQ
7	SP3	3jwne	0.167	0.407	2.367	threading_7	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ADSTITVRDNGCSVAAESTNFTVDLMENAAKQFGATTPVVPFRILLSPCGNAVSAVKVGFTGVADSHNALALENTVSAAAGLGIQLLNEQQNQIPLNAPSALSWTTLTPGKPNTLNFYARLMAT-QVPVTAGHINATATFTLEYQ
8	SAM-T99	2uy7B	0.199	0.398	1.153	threading_8	------------------------------------------------------------------------------------------------------------------------------------------G------------------KVTF-------------NN--------------------------------------TVVDAPCSISQKSADQSIDFGQLSKSFLEAGGVSKPMDLDIELV---NCDKG-TVKLAFTGPIVNGHSDELDTNGGTGTAIVVQAGKNVVFDGSEGDANTLKDGENVL--HYTAVVKKSSGAAVTEGAFSAVANFNLTYQ
9	MUSTER	2bwrA	0.104	0.955	0.909	threading_9	ADLVGFGNGGVYIIRNSLLIQVVKVINNFGYDAGGWRVEKHVRLLADT-DNQVVGFGEN---GVWISTNNGNNTFVDPPKMVLA--NFAYAAGGWRVEKHIRFMA--LRKADIVGFGDGGI---YISRNNGGGQFAPAALNNFGYAQGWRLDRHLRFLADVLLDVVGFGENQVYIARNSGNGTFAQAVVNNFCIGAGGWTISAHPRVVADLTGLGFGVAGVYTSLNNGNGTFGAVNLVLKDFGVNSRVEKHVRCVSSLTNKKVNGNGTFGPVKRVIDNFGYNQGWRVKHPRFVVDLTGDGCAVGFGENSVWACMNKGDGT-----FGPIMKLIDDMTVSKGTLQKTVRYAANYL
10	SPARKS	3bwuf	0.160	0.353	2.415	threading_10	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DNGCSVAAESTNFI-----------GATTPVVPFRILLSPCGNAVSAVKVGFTGVADSHNALALENTVSAASGLGIQLLNEQQNQIPLNAPSALSWTTLTPGKPNTLNFYARLMAT-QVPVTAGHINATATFTLEYQ

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.688 to 1klfP SCOP code=b.2.3.2	TM-score=0.791 to 1klfP SCOP code=b.2.3.2	TM-score=0.547 to 1klfP SCOP code=b.2.3.2	TM-score=0.662 to 1w8nA SCOP code=b.1.18.2	TM-score=0.828 to 1klfP SCOP code=b.2.3.2