Template-based Modeling Results for YPDA_ECOLI

Submitted Primary Sequence

>Length 565
MHEIFNMLLAVFDRAALMLICLFFLIRIRLFRELLHKSAHSPKELLAVTAIFSLFALFSTWSGVPVEGSLVNVRIIAVMSGGILFGPWVGIITGVIAGIHRYLIDIGGVTAIPCFITSILAGCISGWINLKIPKAQRWRVGILGGMLCETLTMILVIVWAPTTALGIDIVSKIGIPMILGSVCIGFIVLLVQSVEGEKEASAARQAKLALDIANKTLPLFRHVNSESLRKVCEIIRDDIHADAVAITNTDHVLAYVGVGEHNYQNGDDFISPTTRQAMNYGKIIIKNNDEAHRTPEIHSMLVIPLWEKGVVTGTLKIYYCHAHQITSSLQEMAVGLSQIISTQLEVSRAEQLREMANKAELRALQSKINPHFLFNALNAISSSIRLNPDTARQLIFNLSRYLRYNIELKDDEQIDIKKELYQIKDYIAIEQARFGDKLTVIYDIDEEVNCCIPSLLIQPLVENAIVHGIQPCKGKGVVTISVAECGNRVRIAVRDTGHGIDPKVIERVEANEMPGNKIGLLNVHHRVKLLYGEGLHIRRLEPGTEIAFYIPNQRTPVASQATLLL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MHEIFNMLLAVFDRAALMLICLFFLIRIRLFRELLHKSAHSPKELLAVTAIFSLFALFSTWSGVPVEGSLVNVRIIAVMSGGILFGPWVGIITGVIAGIHRYLIDIGGVTAIPCFITSILAGCISGWINLKIPKAQRWRVGILGGMLCETLTMILVIVWAPTTALGIDIVSKIGIPMILGSVCIGFIVLLVQSVEGEKEASAARQAKLALDIANKTLPLFRHVNSESLRKVCEIIRDDIHADAVAITNTDHVLAYVGVGEHNYQNGDDFISPTTRQAMNYGKIIIKNNDEAHRTPEIHSMLVIPLWEKGVVTGTLKIYYCHAHQITSSLQEMAVGLSQIISTQLEVSRAEQLREMANKAELRALQSKINPHFLFNALNAISSSIRLNPDTARQLIFNLSRYLRYNIELKDDEQIDIKKELYQIKDYIAIEQARFGDKLTVIYDIDEEVNCCIPSLLIQPLVENAIVHGIQPCKGKGVVTISVAECGNRVRIAVRDTGHGIDPKVIERVEANEMPGNKIGLLNVHHRVKLLYGEGLHIRRLEPGTEIAFYIPNQRTPVASQATLLL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCHHHCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCEEEEEEEECCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MHEIFNMLLAVFDRAALMLICLFFLIRIRLFRELLHKSAHSPKELLAVTAIFSLFALFSTWSGVPVEGSLVNVRIIAVMSGGILFGPWVGIITGVIAGIHRYLIDIGGVTAIPCFITSILAGCISGWINLKIPKAQRWRVGILGGMLCETLTMILVIVWAPTTALGIDIVSKIGIPMILGSVCIGFIVLLVQSVEGEKEASAARQAKLALDIANKTLPLFRHVNSESLRKVCEIIRDDIHADAVAITNTDHVLAYVGVGEHNYQNGDDFISPTTRQAMNYGKIIIKNNDEAHRTPEIHSMLVIPLWEKGVVTGTLKIYYCHAHQITSSLQEMAVGLSQIISTQLEVSRAEQLREMANKAELRALQSKINPHFLFNALNAISSSIRLNPDTARQLIFNLSRYLRYNIELKDDEQIDIKKELYQIKDYIAIEQARFGDKLTVIYDIDEEVNCCIPSLLIQPLVENAIVHGIQPCKGKGVVTISVAECGNRVRIAVRDTGHGIDPKVIERVEANEMPGNKIGLLNVHHRVKLLYGEGLHIRRLEPGTEIAFYIPNQRTPVASQATLLL
3230020010001100000000000010300230133223113200000000000000010000102000010110000001113011100000000000200121100100000000000000000001102322312000000000100000000000212210120003000000000000000010021021223212221021012002201201340123003200300131020200000123200000010321123223101200220132120001223323421312000001112311110002112121310010012002001201210121121221221122111310122011200000010000003121310230011002001110333332202033002103100100102023201010102331202001000010010002110232433000101012224201000211141032300231323322233000100120012101310202223300201010022333223322224
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MHEIFNMLLAVFDRAALMLICLFFLIRIRLFRELLHKSAHSPKELLAVTAIFSLFALFSTWSGVPVEGSLVNVRIIAVMSGGILFGPWVGIITGVIAGIHRYLIDIGGVTAIPCFITSILAGCISGWINLKIPKAQRWRVGILGGMLCETLTMILVIVWAPTTALGIDIVSKIGIPMILGSVCIGFIVLLVQSVEGEKEASAARQAKLALDIANKTLPLFRHVNSESLRKVCEIIRDDIHADAVAITNTDHVLAYVGVGEHNYQNGDDFISPTTRQAMNYGKIIIKNNDEAHRTPEIHSMLVIPLWEKGVVTGTLKIYYCHAHQITSSLQEMAVGLSQIISTQLEVSRAEQLREMANKAELRALQSKINPHFLFNALNAISSSIRLNPDTARQLIFNLSRYLRYNIELKDDEQIDIKKELYQIKDYIAIEQARFGDKLTVIYDIDEEVNCCIPSLLIQPLVENAIVHGIQPCKGKGVVTISVAECGNRVRIAVRDTGHGIDPKVIERVEANEMPGNKIGLLNVHHRVKLLYGEGLHIRRLEPGTEIAFYIPNQRTPVASQATLLL
1	PROSPECT2	1qgra	0.095	0.989	2.038	threading_1	MENLPTFLVELSRVLAVAGIACAEIPVNPQLVANVTNPNSTEHMKESTLEAIGYICAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEACPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMIEFWSNVCDEEMDLAIEASAKGALQYLVPILTQNPCKAAGVCLMLLATCCEDDIPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSRPDGHQNNLRSSAYESLMEIYPAVQKTTLVIMERLQQVLDRIQFNDLQSLLCATVMASLLRMFSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVALQSNIIFCDEVMQLLLENLGNE-----NVHRSVKPQILSVFFKKYLEVVLQQASQAQVDKSDYDMVDYLNETGIVQGLKGDQENVHPSFIDHIAGDEDHTDGVVACAAGGDLCTAFGKDV-LKLVEARPMIHELLTEGRRSKTNKAKTLA
2	PROSPECT2	1w63A	0.078	0.883	1.986	threading_2	MPAPIRLR-ELIRTITQAEEREMIQKECAAIRSSFREEDNTYRCRNVAKLLYFGQLECLKL----IASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQLCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLL---------NNDKNIRYVA-------------LTSLLKTVQTDHNAVQRHRSTIVDCLKVSIKRRAMELSFARGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLYTVQRLYKAIL-------------GDYSQQPLVQVAAWCIGEYGDLLVSGQCEEE--------------------EPIQVTEDILESVLISNMSTSVTRGYALTAIMKLSTRFT------CTVNRIKKVVSIYGSSIERMPVMEK
3	HHPRED-l	2c2a_A	0.187	0.370	3.755	threading_3	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEN----V---TESKELERLKRI---DRMKTEFIANISHELRTPLTAIKAYAEDQSNHLENLLNELLDFSRLERKSLNREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQF---TGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPKDR-----------
4	PROSPECT2	2bkuB	0.088	0.982	1.929	threading_4	MLQFAGLSSQVLIANAAAQLIAAIADIELLMKIMVDNTGAEQPENVKRASLLALGYMCESADA---LVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIEREGERNYLMQVVCEATLYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYLQSYNFALSSIKDVVPNLLVSMSAGACLQLFAQNCGNHILEPKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVE-QLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARAYATDTVAETSASISTFVMDKLGQTMDAQSLQELQSNILTVFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITEDFRRYSDAMMNVLAQMISNP-----NARRELKPAVLSVFLNDIMALCVAAQNTKPENGTLEALDYQIKLDAYVGIVAGLHDKPEAQFIAQVAEDPQLYSEDATSGLIGDIAAMFPDGS-IKQFYGQDWVIDYIKRTRSGQLFSQALSL
5	SPARKS	3d36a	0.142	0.373	1.642	threading_5	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GPHMVIRLAASISHEIRNPLTAARGFIQLIEEQPLA-----------------ADKRRQYARIAIEELDRAEAIITDYLTFAK--PAPETPEKLNVKLEIERVIDIL---RPLANMSVDIQATLAP-FSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSIDNGRVLIRIADTGVGMTKEQLERLGEPGVKGTGLGMMVVYRIIESMNGTIRIESEIHKGTTVSIYLPLAS-----------
6	PROSPECT2	1jdha	0.097	0.837	1.888	threading_6	LIRAIPELTKLLNVNKAAVMVHQLSKKEASRHAIMRSPQ-------MVSAIVRTMQ----------NTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMREKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA----TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN---------LTCNNYKNKMMVC-----QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPGAIPRLVQLLVRAHQDTQFEGVRMEEIVEGC--TGALHILARDVHNRIVIRGLNTIPLFVQLLYIQRVAAGVLCELAQ---------------DKEAAEAIEAEGA---TAPLTELLHSRN-------EGVATYAAAVLFR------------------------------MS
7	PPA-I	3gigA	0.199	0.356	1.034	threading_7	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KERERLEEKLEDANERIAELVKLEERQRIARDLHDTLGQKLSLIGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNVSSMKGIRLKDELINIKQILEAA------DIMFIYEEEKWPENIILSMCLKEAVTNVVKHS-----QAKTCRVDIQQLWKEVVITVSDDGTFK----------GEENSFSHGLLGMRERLEFA-NGSLHIDT-ENGTKLTMAIPNN------------
8	MUSTER	3ea5B	0.118	0.977	0.907	threading_8	KTNALTALVPRIANAAAQLIAAIADIELELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQVSSS-NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQA-----EDIEVQAAAFGCLCKIMSKYY--FMKPYMEQALYALTIATMKDKVASMTVEFWSTICEEEIDIAYELAQFALSSIKDVVPNLLNLLTRQNSMSAGACLQLFAQNCGNHILNITADNWRNAVMAFGSIMDGPDKVQRTYYVHQALP---SILNLMNDQSLQVKETTAWCISIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEASPIYNFYPALVDGLIGAANRIDNFNARASAFSALTTMVEYVAETSASISTFVMDKLGQTMSVDENQLQSLQELQSNILTVLAAVIRKSPSSVEFRLFIEDDVFYAISALAFEKYLETFSPYLLK-NQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQNARRELKPAVLSVFGDIASNIGADFI-PYLNDIMALCVAAPENGTLEALDYQIKV
9	SPARKS	3a0ra	0.116	0.536	2.026	threading_9	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FSESILESLE-TAIITLSKDGRITEWGLKKEKDLPDFEEIGSVAESVFENKEPVFLNFYKFGERYFNIRFSPFRNAKTQLLEGVIITIDDRLSILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYI-----------------NIITNELSRLETIVKEILEYSK--ERVLEFTEFNLNELIREVYVLFE-EKIR-KMNIDFCFETDNELRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPF--FTTLGLSICRKIIEDEHGGKIWTENRENGVVFIFEIPKTPEKR--------
10	PPA-I	3a0rA	0.119	0.535	1.404	threading_10	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FSESTAIITLSKDGRITEWGLKKEKDLPDFEEIGSVAESVFENKEPVFLNFYKFGERYFNIRFSPFRNAKTQLLEGVIITIDDKRRERLSILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETL-------------KKYINIITNELSRLETIVKEILEYSKE--RVLEFTEFNLNELIREVYVLFEEKIRKMNIDFCFETD-NEDLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPF--FTTLGLSICRKIIEDEHGGKIWTENRENGVVFIFEIPKTPEKR--------

Predicted Tertiary Structure


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TM-score=0.855 to 1b3uA SCOP code=a.118.1.2	TM-score=0.567 to 1qgkA SCOP code=a.118.1.1	TM-score=0.787 to 1w63C SCOP code=i.23.1.1	TM-score=0.541 to 1ys3B SCOP code=d.122.1.3	TM-score=0.669 to 3ea5B SCOP code=a.118.1.1