Template-based Modeling Results for YNJB_ECOLI

Submitted Primary Sequence

>Length 388
MRHCGWLLGLLSLFSLATHASDWQEIKNEAKGQTVWFNAWGGDTAINRYLDWVSGEMKTHYAINLKIVRLADAADAVKRIQTEAAAGRKTGGSVDLLWVNGENFRTLKEANLLQTGWAETLPNWRYVDTQLPVREDFSVPTQGAESPWGGAQLTFIARRDVTPQPPQTPQALLEFAKANPGTVTYPRPPDFTGTAFLEQLLIMLTPDPAALKEAPDDATFARVTAPLWQYLDVLHPYLWREGKDFPPSPARMDALLKAGTLRLSLTFNPAHAQQKIASGDLPASSYSFGFREGMIGNVHFVTIPANANASAAAKVVANFLLSPDAQLRKADPAVWGDPSVLDPQKLPDGQRESLQSRMPQDLPPVLAEPHAGWVNALEQEWLHRYGTH
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRHCGWLLGLLSLFSLATHASDWQEIKNEAKGQTVWFNAWGGDTAINRYLDWVSGEMKTHYAINLKIVRLADAADAVKRIQTEAAAGRKTGGSVDLLWVNGENFRTLKEANLLQTGWAETLPNWRYVDTQLPVREDFSVPTQGAESPWGGAQLTFIARRDVTPQPPQTPQALLEFAKANPGTVTYPRPPDFTGTAFLEQLLIMLTPDPAALKEAPDDATFARVTAPLWQYLDVLHPYLWREGKDFPPSPARMDALLKAGTLRLSLTFNPAHAQQKIASGDLPASSYSFGFREGMIGNVHFVTIPANANASAAAKVVANFLLSPDAQLRKADPAVWGDPSVLDPQKLPDGQRESLQSRMPQDLPPVLAEPHAGWVNALEQEWLHRYGTH
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHCCCCCCCCHHHCCCHHHCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEHHHCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEEEEECHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRHCGWLLGLLSLFSLATHASDWQEIKNEAKGQTVWFNAWGGDTAINRYLDWVSGEMKTHYAINLKIVRLADAADAVKRIQTEAAAGRKTGGSVDLLWVNGENFRTLKEANLLQTGWAETLPNWRYVDTQLPVREDFSVPTQGAESPWGGAQLTFIARRDVTPQPPQTPQALLEFAKANPGTVTYPRPPDFTGTAFLEQLLIMLTPDPAALKEAPDDATFARVTAPLWQYLDVLHPYLWREGKDFPPSPARMDALLKAGTLRLSLTFNPAHAQQKIASGDLPASSYSFGFREGMIGNVHFVTIPANANASAAAKVVANFLLSPDAQLRKADPAVWGDPSVLDPQKLPDGQRESLQSRMPQDLPPVLAEPHAGWVNALEQEWLHRYGTH
4210010000000000013122132013313221000001111210120021002302331302020021220220032012112223332110000000030021023230023111320221320133122232111213101000000000000123114321310310020042131101013123110100011000200222212322223210220022013002201210142233123211200100420101000000110011112223122201000043100000100000131411200200021001320022302221111011132330131123113231132023102212110020012201432344
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRHCGWLLGLLSLFSLATHASDWQEIKNEAKGQTVWFNAWGGDTAINRYLDWVSGEMKTHYAINLKIVRLADAADAVKRIQTEAAAGRKTGGSVDLLWVNGENFRTLKEANLLQTGWAETLPNWRYVDTQLPVREDFSVPTQGAESPWGGAQLTFIARRDVTPQPPQTPQALLEFAKANPGTVTYPRPPDFTGTAFLEQLLIMLTPDPAALKEAPDDATFARVTAPLWQYLDVLHPYLWREGKDFPPSPARMDALLKAGTLRLSLTFNPAHAQQKIASGDLPASSYSFGFREGMIGNVHFVTIPANANASAAAKVVANFLLSPDAQLRKADPAVWGDPSVLDPQKLPDGQRESLQSRMPQDLPPVLAEPHAGWVNALEQEWLHRYGTH
1	MUSTER	1poy1	0.141	0.822	2.090	threading_1	-------------------------------NNTLYFYNWTE------YVPGLLEQFTKETGIKVIYSTYESNETMYAKLKT------YKDGAYDLVVPSTYYVDKMRKEGMIQKIDKSKLTNFSNLDPDMLNKP--FDPNNDYSIPYIWGATAIGVNGDAVDKSVTSWADL--WKPEYKGSLLLTDD------------AREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFN------SDNPANPYMEGEVNLGMIWNGSAFVARQAG----TPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLLRPDVAKQVAETIGYPTPNLAARKLLSPEVANDKTLYPDAETIKNGQNDVGAASSIYEEYYQKLKAGR
2	SPARKS	1pot_	0.145	0.820	3.771	threading_2	-------------------------------NNTLYFYNWTEYVP-----PGLLEQFTKETGIKVIYSTYESNETMYAKLKT------YKDGAYDLVVPSTYYVDKMRKEGMIQKIDKSKLTNFSNLDPDM--LNKPFDPNNDYSIPYIWGATAIGVNGDAVDKSVTSWADLWK--PEYKGSLLLTDD------------AREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSD------NPANPYMEGEVNLGMIWNGSAFVAR-QAGT---PIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLLRPDVAKQVAETIGYPTPNLAARKLLSPEVANDKTLYPDAETIKNGQNDVGAASSIYEEYYQKKAG--
3	PROSPECT2	1a99a	0.150	0.843	2.694	threading_3	-------------------------------QKTLHIYNWSDY-----IAPDTVANFEKETGIKVVYDVFDSNEVLEGKLMA-------GSTGFDLVVPSASFLERQLTAGVFQPLDKSKLPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVNAPVDSWDLILNLEKLKSCGVSFLD-----APEEVFATVLNYLG------KDPNSTKADDYTGPATDLLLKLRPN----IRYFHSS--QYINDLANGDICVAIGWAGWQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLLRPDVVAHISDHVFYANANKAATPLVSAEVRENPGIYPPADVRATLKVQDPKIDRVRTRAW-TKVKSG
4	PPA-I	1poy1	0.141	0.825	2.490	threading_4	-------------------------------NNTLYFYNWTEYVP-----PGLLEQFTKETGIKVIYSTYESNETMYAKLKT------YKDGAYDLVVPSTYYVDKMRKEGMIQKIDKSKLTNFSNLDPDMLNKP--FDPNNDYSIPYIWGATAIGVNGDAVDKSVTSWADL--WKPEYKGSLLLTDD------------AREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSD------NPANPYMEGEVNLGMIWNGSAFVARQAG----TPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLLRPDVAKQVAETIGYPTPNLAARKLLSPEVANDKTLYPDAETIKNGQNDVGAASSIYEEYYQKLKAGR
5	HHPRED-l	3rpw_A	0.141	0.789	2.173	threading_5	------------------------------QSNVVI-QDPGGGYG-DALRKV-YDPFEKETGIKVVTVQEA---RSGPRIKAQAEAGKA---QWDLTFIFDQETKLL-GDCCLADIDYSKLSESLAA-PDN-----L-K--RKKGVALQVIGVGLVYNKDKFDKAPQTWADFWDVK-KFPGRRC-PAWPR---F--TFEAAL-ADGVTK-------DKLYPID-DRALKKLKEIKPHVV----KWWTTAAQPPQLILDGEAD-CLAYTGS-SKLAL-EG-A--PIDLTFN--QGFVYYDFFSIPKGAPNYDNALKLLSWRLDPKRAAQLTSTFP--VALPSKVVATDKNIARYWAN-NPENVAK-AIEWSPDFWGANEEYGQEKLNA-
6	HHPRED-g	3rpw_A	0.146	0.794	2.358	threading_6	------------------------------QSNVVI-QDPGGGY-GDALRKV-YDPFEKETGIKVVTVQEAR---SGPRIKAQAEA---GKAQWDLTFIFDQETKLL-GDCCLADIDYSKLSESAAA-PDN-----L---KRKKGVALQVIGVGLVYNKDKFDKAPQTWADFWDVK-KFPGRRC-PAWPRF----T--------FEAAL-ADGVTKDKLYPID-DRALKKLKEIKPHVVK----WWTTAAQPPQLILDGEAD-CLAYTGS-SKLAL-E---GAPIDLTFN--QGFVYYDFFSIPKGAPNYDNALKLLSWRLDPKRAAQLTSTFPVALPSKVVFDATDKNIARYWA-NNPEN-VAKAIEWSPDFWGANEEYGQEKLNA-
7	SP3	1pot_	0.145	0.817	3.803	threading_7	-------------------------------NNTLYFYNWT------EYVPGLLEQFTKETGIKVIYSTYESNETMYAKLKTY------KDGAYDLVVPSTYYVDKMRKEGMIQKIDKSKLTNFSNLDPDM--LNKPFDPNNDYSIPYIWGATAIGVNGDAVPKSVTSWADLWK--PEYKGSLLLTDD------------AREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAF------NSDNPANPYMEGEVNLGMIWNGSAFVAR----QAGTPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLLRPDVAKQVAETIGYPTPNLAARKLLSPEVANDKTLYPDAETIKNGQNDVGAASSIYEEYYQKKAG--
8	SAM-T99	1poy1	0.168	0.784	4.905	threading_8	-------------------------------NNTLYFYNWT------EYVPGLLEQFTKETGIKVIYSTYESNETMYAKLKT------YKDGAYDLVVPSTYYVDKMRKEGMIQKIDKSKLTNFSNLDP--DMLNKPFDPNNDYSIPYIWGATAIGVNGDAVPKSVTSWADLWKP--EYKGSLL-----LTDDAREVFQMALRKLG---YSGNTTDPKEIEA----AYNELKKLMPNV----AAF--NSDNPANPYMEGEVNLGMIWNGSAFVARQA-G---TPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLLRPDVAKQVAE-TIGYPTPNLARKLLSPEVAN-------------DKTLYPDAETIKNGEWQNDVGA-
9	MUSTER	1a99A	0.158	0.848	2.056	threading_9	-------------------------------QKTLHIYNWSD------YIADTVANFEKETGIKVVYDVFDSNEVLEGKLMAG-------STGFDLVVPSASFLERQLTAGVFQPLDKSKLPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVNAPVDSWDLILK--PENLEKL------KSCGVSFLDAPEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNI----RYF--HSSQYINDLANGDICVAIGWAGDVWQASNRAAKNGVNVSFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLLRPDVVAHISDHVFYANANKAATPLVSAEVRENPGIYPPADVRAKLKVQDPKIDRVRTRAWTKVKSG-
10	SPARKS	1a99a	0.152	0.848	3.643	threading_10	-------------------------------QKTLHIYNWSDYIA-----PDTVANFEKETGIKVVYDVFDSNEVLEGKLMA-------GSTGFDLVVPSASFLERQLTAGVFQPLDKSKLPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVNAPVDSWDLILK--PENLEKL------KSCGVSFLDA-PEEVFATVLNYLGKDPNSTKADDYGPATDLLLKLRPNIRYFHSS------QYINDLANGDICVAIGWAGDVWQASNRAAKNGVNVSFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLLRPDVVAHISDHVFYANANKAATPLVSAEVRENPGIYPPADVRAKLKVQDPKIDRVRTRAWTKVKSG-

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.893 to 1poy1 SCOP code=c.94.1.1	TM-score=0.896 to 1poy1 SCOP code=c.94.1.1	TM-score=0.889 to 1poy1 SCOP code=c.94.1.1	TM-score=0.890 to 1a99A SCOP code=c.94.1.1	TM-score=0.900 to 1poy1 SCOP code=c.94.1.1